Wall clock time and date at job start Tue Mar 31 2020 12:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47182 * 2 1 4 4 C 1.53003 * 109.47073 * 239.99811 * 2 1 3 5 5 C 1.50704 * 109.47521 * 120.00027 * 2 1 3 6 6 N 1.29421 * 124.80246 * 59.96977 * 5 2 1 7 7 C 1.30949 * 117.36591 * 179.73054 * 6 5 2 8 8 C 1.35673 * 114.18410 * 0.53160 * 7 6 5 9 9 C 1.46670 * 126.13225 * 179.78269 * 8 7 6 10 10 O 1.21711 * 120.00097 * 179.68932 * 9 8 7 11 11 N 1.34777 * 120.00028 * 359.69135 * 9 8 7 12 12 C 1.40535 * 120.00213 * 179.97438 * 11 9 8 13 13 C 1.40658 * 126.08369 * 359.96311 * 12 11 9 14 14 N 1.30907 * 108.39004 * 179.77436 * 13 12 11 15 15 N 1.40065 * 108.40706 * 0.40225 * 14 13 12 16 16 C 1.37320 * 126.06888 * 179.85606 * 15 14 13 17 17 H 1.08002 * 120.00430 * 179.69231 * 16 15 14 18 18 C 1.38992 * 119.99664 * 359.41107 * 16 15 14 19 19 N 1.31294 * 120.00157 * 0.27652 * 18 16 15 20 20 Si 1.86803 * 119.99838 * 180.27798 * 18 16 15 21 21 H 1.48504 * 109.47034 * 59.99910 * 20 18 16 22 22 H 1.48498 * 109.47326 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46993 * 299.99983 * 20 18 16 24 24 C 1.35695 * 126.08244 * 179.97438 * 12 11 9 25 25 S 1.70953 * 124.80310 * 240.00505 * 5 2 1 26 26 H 1.09000 * 109.46734 * 299.99703 * 1 2 3 27 27 H 1.08993 * 109.47283 * 60.00134 * 1 2 3 28 28 H 1.09004 * 109.46852 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47666 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47293 * 300.00093 * 3 2 1 31 31 H 1.09000 * 109.47669 * 60.00062 * 3 2 1 32 32 H 1.08994 * 109.47349 * 299.99739 * 4 2 1 33 33 H 1.09003 * 109.47084 * 59.99784 * 4 2 1 34 34 H 1.09003 * 109.47150 * 180.02562 * 4 2 1 35 35 H 1.08002 * 122.91218 * 180.30809 * 7 6 5 36 36 H 0.97010 * 119.99548 * 359.97438 * 11 9 8 37 37 H 1.08005 * 125.80715 * 0.06353 * 13 12 11 38 38 H 0.96996 * 120.00263 * 179.97438 * 19 18 16 39 39 H 1.07994 * 126.25002 * 0.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 7 1.7773 -1.9441 1.5271 7 6 2.2946 -2.4165 2.6334 8 6 3.0327 -1.5165 3.3305 9 6 3.7231 -1.7630 4.6009 10 8 4.3619 -0.8718 5.1292 11 7 3.6501 -2.9763 5.1832 12 6 4.3121 -3.2126 6.4002 13 6 5.0831 -2.2808 7.1184 14 7 5.5333 -2.8640 8.2005 15 7 5.0773 -4.1883 8.2115 16 6 5.3389 -5.1254 9.1806 17 1 4.9312 -6.1217 9.0926 18 6 6.1332 -4.7935 10.2718 19 7 6.6290 -3.5825 10.3788 20 14 6.4955 -6.0706 11.5861 21 1 7.1946 -7.2281 10.9723 22 1 7.3582 -5.4702 12.6352 23 1 5.2213 -6.5284 12.1960 24 6 4.3213 -4.3803 7.0913 25 16 3.0193 -0.0005 2.4324 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2492 33 1 1.6766 -0.2075 -2.1393 34 1 3.1300 -0.7217 -1.2490 35 1 2.1438 -3.4335 2.9642 36 1 3.1407 -3.6864 4.7622 37 1 5.2681 -1.2569 6.8290 38 1 7.1830 -3.3507 11.1404 39 1 3.8227 -5.2949 6.8064 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139273547.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:04 Heat of formation + Delta-G solvation = 83.832580 kcal Electronic energy + Delta-G solvation = -23241.142700 eV Core-core repulsion = 19698.500277 eV Total energy + Delta-G solvation = -3542.642423 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.31535 -39.74267 -38.48757 -36.86330 -34.28975 -33.22279 -30.65325 -30.04351 -27.80517 -27.63239 -27.59978 -26.02035 -24.78681 -22.23095 -21.22718 -20.85272 -19.59295 -19.02123 -17.86309 -17.41567 -16.76057 -15.52883 -15.35520 -15.32585 -14.90531 -14.60723 -14.57426 -14.25674 -13.89240 -13.75260 -13.48904 -13.13233 -12.91861 -12.63589 -12.52268 -12.03299 -11.91674 -11.69851 -11.56674 -11.42708 -11.38582 -11.29887 -11.26195 -11.00736 -10.57632 -10.24949 -9.95113 -9.46370 -9.29756 -9.20302 -8.99658 -8.84933 -8.09425 -6.74537 -6.58288 -4.25397 0.23190 1.10676 1.65607 2.43775 2.94230 3.03518 3.07788 3.26293 3.57794 3.71635 3.73004 3.87233 4.38747 4.40806 4.52832 4.61504 4.72423 4.98069 4.99764 5.05728 5.19859 5.26598 5.27320 5.39976 5.49836 5.53413 5.56996 5.70954 5.85393 5.94239 6.01740 6.21271 6.40936 6.83540 6.91357 7.04525 7.19461 7.52373 7.82186 8.08253 8.22182 8.56336 8.75753 9.33938 9.62969 10.37523 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.047357 B = 0.002304 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.117155 B =12149.857639 C =12549.895150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.010 3.990 3 C -0.158 4.158 4 C -0.134 4.134 5 C 0.039 3.961 6 N -0.474 5.474 7 C 0.079 3.921 8 C -0.279 4.279 9 C 0.573 3.427 10 O -0.532 6.532 11 N -0.606 5.606 12 C -0.061 4.061 13 C -0.029 4.029 14 N -0.260 5.260 15 N -0.140 5.140 16 C -0.322 4.322 17 H 0.117 0.883 18 C 0.046 3.954 19 N -0.768 5.768 20 Si 0.936 3.064 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.266 1.266 24 C -0.082 4.082 25 S 0.229 5.771 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.179 0.821 36 H 0.397 0.603 37 H 0.177 0.823 38 H 0.276 0.724 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.288 4.910 -19.667 22.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.006 3.994 3 C -0.216 4.216 4 C -0.193 4.193 5 C -0.235 4.235 6 N -0.187 5.187 7 C -0.079 4.079 8 C -0.404 4.404 9 C 0.358 3.642 10 O -0.410 6.410 11 N -0.248 5.248 12 C -0.167 4.167 13 C -0.205 4.205 14 N -0.091 5.091 15 N 0.093 4.907 16 C -0.455 4.455 17 H 0.134 0.866 18 C -0.172 4.172 19 N -0.395 5.395 20 Si 0.759 3.241 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.191 1.191 24 C -0.233 4.233 25 S 0.489 5.511 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.196 0.804 36 H 0.231 0.769 37 H 0.194 0.806 38 H 0.087 0.913 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.849 6.565 -18.262 21.328 hybrid contribution -0.782 -2.177 -0.038 2.314 sum -9.631 4.388 -18.300 21.140 Atomic orbital electron populations 1.21841 0.92141 1.03154 1.02144 1.19250 0.96694 0.93973 0.89437 1.22062 1.01914 0.94215 1.03369 1.21843 1.01266 1.01063 0.95109 1.27503 1.00594 0.93991 1.01453 1.65972 1.23482 1.11832 1.17423 1.22118 0.95023 1.00851 0.89916 1.25935 1.11030 0.99392 1.04018 1.16504 0.81831 0.83117 0.82773 1.90741 1.42584 1.43661 1.64059 1.42192 1.49497 1.11698 1.21374 1.17216 1.11572 0.96252 0.91666 1.24141 1.01521 1.00532 0.94295 1.78274 1.22779 0.88967 1.19082 1.44565 1.26492 1.07731 1.11937 1.19851 1.32924 0.92605 1.00074 0.86570 1.25659 0.95559 0.97233 0.98708 1.70203 1.24171 1.17598 1.27506 0.85882 0.79085 0.79741 0.79372 1.19122 1.20109 1.19122 1.21248 1.09553 0.98574 0.93953 1.84034 1.43701 1.11312 1.12091 0.92412 0.91588 0.91372 0.91638 0.90531 0.91631 0.91376 0.91586 0.92412 0.80425 0.76897 0.80635 0.91331 0.83545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.96 8.45 37.16 0.31 -0.65 16 2 C 0.01 0.08 0.99 -155.66 -0.15 -0.07 16 3 C -0.16 -1.01 7.53 37.15 0.28 -0.73 16 4 C -0.13 -0.96 8.45 37.16 0.31 -0.65 16 5 C 0.04 0.43 5.78 -13.29 -0.08 0.36 16 6 N -0.47 -5.83 10.49 -11.50 -0.12 -5.95 16 7 C 0.08 0.99 10.93 -18.85 -0.21 0.78 16 8 C -0.28 -4.10 6.48 -37.10 -0.24 -4.34 16 9 C 0.57 10.66 7.76 -12.86 -0.10 10.56 16 10 O -0.53 -11.82 14.11 5.18 0.07 -11.74 16 11 N -0.61 -11.06 5.45 -11.18 -0.06 -11.13 16 12 C -0.06 -1.42 6.90 -83.86 -0.58 -2.00 16 13 C -0.03 -0.78 10.85 -17.03 -0.18 -0.96 16 14 N -0.26 -7.59 10.40 30.80 0.32 -7.27 16 15 N -0.14 -3.84 3.74 -11.40 -0.04 -3.89 16 16 C -0.32 -8.49 10.25 -14.81 -0.15 -8.64 16 17 H 0.12 2.71 7.83 -52.49 -0.41 2.30 16 18 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 19 N -0.77 -21.45 11.81 55.50 0.66 -20.79 16 20 Si 0.94 18.83 29.55 -169.99 -5.02 13.81 16 21 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 22 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 24 C -0.08 -1.93 11.50 -16.38 -0.19 -2.11 16 25 S 0.23 2.83 21.38 -107.50 -2.30 0.53 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.42 7.92 -51.93 -0.41 0.01 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.42 7.92 -51.93 -0.41 0.01 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.18 1.75 7.15 -52.49 -0.38 1.38 16 36 H 0.40 5.57 7.53 -40.82 -0.31 5.26 16 37 H 0.18 4.63 5.91 -52.48 -0.31 4.32 16 38 H 0.28 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.15 2.84 8.06 -52.49 -0.42 2.41 16 LS Contribution 347.23 15.07 5.23 5.23 Total: -1.00 -33.72 347.23 -7.08 -40.80 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -4.74 Total: 7.76 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -1.07 Total: -7.37 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 0.75 Total: -49.02 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.07 Total: -11.74 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.81 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -2.30 Total: 0.53 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.72 -7.08 -40.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139273547.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.633 kcal (2) G-P(sol) polarization free energy of solvation -33.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds