Wall clock time and date at job start Tue Mar 31 2020 12:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47182 * 2 1 4 4 C 1.53003 * 109.47073 * 239.99811 * 2 1 3 5 5 C 1.50704 * 109.47521 * 120.00027 * 2 1 3 6 6 N 1.29421 * 124.80246 * 59.96977 * 5 2 1 7 7 C 1.30949 * 117.36591 * 179.73054 * 6 5 2 8 8 C 1.35673 * 114.18410 * 0.53160 * 7 6 5 9 9 C 1.46670 * 126.13225 * 179.78269 * 8 7 6 10 10 O 1.21711 * 120.00097 * 179.68932 * 9 8 7 11 11 N 1.34777 * 120.00028 * 359.69135 * 9 8 7 12 12 C 1.40535 * 120.00213 * 179.97438 * 11 9 8 13 13 C 1.40658 * 126.08369 * 359.96311 * 12 11 9 14 14 N 1.30907 * 108.39004 * 179.77436 * 13 12 11 15 15 N 1.40065 * 108.40706 * 0.40225 * 14 13 12 16 16 C 1.37320 * 126.06888 * 179.85606 * 15 14 13 17 17 H 1.08002 * 120.00430 * 179.69231 * 16 15 14 18 18 C 1.38992 * 119.99664 * 359.41107 * 16 15 14 19 19 N 1.31294 * 120.00157 * 0.27652 * 18 16 15 20 20 Si 1.86803 * 119.99838 * 180.27798 * 18 16 15 21 21 H 1.48504 * 109.47034 * 59.99910 * 20 18 16 22 22 H 1.48498 * 109.47326 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46993 * 299.99983 * 20 18 16 24 24 C 1.35695 * 126.08244 * 179.97438 * 12 11 9 25 25 S 1.70953 * 124.80310 * 240.00505 * 5 2 1 26 26 H 1.09000 * 109.46734 * 299.99703 * 1 2 3 27 27 H 1.08993 * 109.47283 * 60.00134 * 1 2 3 28 28 H 1.09004 * 109.46852 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47666 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47293 * 300.00093 * 3 2 1 31 31 H 1.09000 * 109.47669 * 60.00062 * 3 2 1 32 32 H 1.08994 * 109.47349 * 299.99739 * 4 2 1 33 33 H 1.09003 * 109.47084 * 59.99784 * 4 2 1 34 34 H 1.09003 * 109.47150 * 180.02562 * 4 2 1 35 35 H 1.08002 * 122.91218 * 180.30809 * 7 6 5 36 36 H 0.97010 * 119.99548 * 359.97438 * 11 9 8 37 37 H 1.08005 * 125.80715 * 0.06353 * 13 12 11 38 38 H 0.96996 * 120.00263 * 179.97438 * 19 18 16 39 39 H 1.07994 * 126.25002 * 0.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 7 1.7773 -1.9441 1.5271 7 6 2.2946 -2.4165 2.6334 8 6 3.0327 -1.5165 3.3305 9 6 3.7231 -1.7630 4.6009 10 8 4.3619 -0.8718 5.1292 11 7 3.6501 -2.9763 5.1832 12 6 4.3121 -3.2126 6.4002 13 6 5.0831 -2.2808 7.1184 14 7 5.5333 -2.8640 8.2005 15 7 5.0773 -4.1883 8.2115 16 6 5.3389 -5.1254 9.1806 17 1 4.9312 -6.1217 9.0926 18 6 6.1332 -4.7935 10.2718 19 7 6.6290 -3.5825 10.3788 20 14 6.4955 -6.0706 11.5861 21 1 7.1946 -7.2281 10.9723 22 1 7.3582 -5.4702 12.6352 23 1 5.2213 -6.5284 12.1960 24 6 4.3213 -4.3803 7.0913 25 16 3.0193 -0.0005 2.4324 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2492 33 1 1.6766 -0.2075 -2.1393 34 1 3.1300 -0.7217 -1.2490 35 1 2.1438 -3.4335 2.9642 36 1 3.1407 -3.6864 4.7622 37 1 5.2681 -1.2569 6.8290 38 1 7.1830 -3.3507 11.1404 39 1 3.8227 -5.2949 6.8064 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139273547.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:03 Heat of formation + Delta-G solvation = 61.038260 kcal Electronic energy + Delta-G solvation = -23242.131136 eV Core-core repulsion = 19698.500277 eV Total energy + Delta-G solvation = -3543.630859 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.82731 -41.08695 -40.03787 -37.60619 -36.01225 -35.03986 -32.38086 -31.52298 -29.37768 -28.32506 -28.15333 -27.20102 -26.53640 -23.54754 -22.80712 -22.18194 -21.26414 -20.34166 -19.28759 -18.64282 -18.08217 -17.42129 -16.87405 -16.49676 -15.99515 -15.77885 -15.72612 -15.45028 -15.12274 -15.10799 -14.83133 -14.48363 -14.48139 -13.49669 -13.37020 -13.17775 -13.07126 -12.89922 -12.88297 -12.63889 -12.58884 -12.36322 -12.14085 -11.99274 -11.92188 -11.91446 -11.24803 -11.04327 -10.84944 -10.55464 -10.51203 -10.13173 -9.99698 -8.58160 -8.48148 -6.25960 -0.81264 0.09484 0.66929 1.19268 1.39808 1.41253 1.56448 1.74624 2.01678 2.03171 2.27141 2.54737 2.85182 2.94570 3.08148 3.68485 3.76693 3.94984 4.00863 4.14394 4.30748 4.41865 4.55711 4.71203 4.75993 4.87793 4.87924 4.97961 4.98737 4.99275 5.03317 5.07671 5.25296 5.26290 5.36123 5.38817 5.40501 5.93300 6.26124 6.52350 6.58961 6.70565 7.21349 7.43530 7.64225 8.51024 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.047357 B = 0.002304 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.117155 B =12149.857639 C =12549.895150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.005 3.995 3 C -0.159 4.159 4 C -0.131 4.131 5 C 0.063 3.937 6 N -0.489 5.489 7 C 0.106 3.894 8 C -0.320 4.320 9 C 0.578 3.422 10 O -0.575 6.575 11 N -0.599 5.599 12 C -0.047 4.047 13 C -0.058 4.058 14 N -0.309 5.309 15 N -0.165 5.165 16 C -0.353 4.353 17 H 0.143 0.857 18 C -0.007 4.007 19 N -0.824 5.824 20 Si 1.020 2.980 21 H -0.253 1.253 22 H -0.279 1.279 23 H -0.253 1.253 24 C -0.076 4.076 25 S 0.227 5.773 26 H 0.052 0.948 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.205 0.795 36 H 0.420 0.580 37 H 0.167 0.833 38 H 0.277 0.723 39 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.168 3.441 -21.901 25.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.001 3.999 3 C -0.217 4.217 4 C -0.190 4.190 5 C -0.211 4.211 6 N -0.203 5.203 7 C -0.053 4.053 8 C -0.445 4.445 9 C 0.365 3.635 10 O -0.456 6.456 11 N -0.243 5.243 12 C -0.153 4.153 13 C -0.233 4.233 14 N -0.141 5.141 15 N 0.066 4.934 16 C -0.484 4.484 17 H 0.160 0.840 18 C -0.219 4.219 19 N -0.452 5.452 20 Si 0.839 3.161 21 H -0.177 1.177 22 H -0.204 1.204 23 H -0.177 1.177 24 C -0.227 4.227 25 S 0.488 5.512 26 H 0.071 0.929 27 H 0.110 0.890 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.222 0.778 36 H 0.258 0.742 37 H 0.184 0.816 38 H 0.087 0.913 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -10.765 5.086 -20.550 23.750 hybrid contribution -0.340 -1.614 0.363 1.689 sum -11.106 3.472 -20.187 23.300 Atomic orbital electron populations 1.21846 0.91110 1.02827 1.03242 1.19549 0.97409 0.94682 0.88224 1.22110 1.01834 0.93201 1.04535 1.21847 1.01002 1.00675 0.95503 1.28276 0.98034 0.93543 1.01255 1.66127 1.24297 1.12377 1.17484 1.22559 0.92441 1.01435 0.88914 1.25503 1.13878 1.01487 1.03599 1.16991 0.80733 0.82316 0.83428 1.90719 1.44404 1.44995 1.65511 1.42052 1.49574 1.12708 1.19995 1.17261 1.10143 0.95181 0.92716 1.24172 1.03170 1.00880 0.95049 1.78167 1.24642 0.90691 1.20630 1.44862 1.27724 1.07352 1.13453 1.20622 1.33717 0.93571 1.00505 0.83955 1.26917 0.94614 0.99384 1.01004 1.70392 1.25713 1.20410 1.28674 0.84637 0.79253 0.76604 0.75616 1.17656 1.20361 1.17658 1.21996 1.08175 1.00025 0.92501 1.84067 1.44164 1.10715 1.12302 0.92855 0.89036 0.92387 0.91871 0.88037 0.91867 0.92388 0.89036 0.92851 0.77838 0.74228 0.81611 0.91335 0.79134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 8.45 71.98 0.61 -0.90 16 2 C 0.01 0.07 0.99 -52.93 -0.05 0.02 16 3 C -0.16 -1.61 7.53 71.98 0.54 -1.07 16 4 C -0.13 -1.50 8.45 71.98 0.61 -0.90 16 5 C 0.06 1.27 5.78 88.47 0.51 1.78 16 6 N -0.49 -10.97 10.49 -190.29 -2.00 -12.97 16 7 C 0.11 2.43 10.93 84.23 0.92 3.35 16 8 C -0.32 -9.19 6.48 23.88 0.15 -9.04 16 9 C 0.58 21.66 7.76 86.44 0.67 22.33 16 10 O -0.57 -26.58 14.11 -4.38 -0.06 -26.64 16 11 N -0.60 -21.46 5.45 -307.50 -1.68 -23.14 16 12 C -0.05 -2.18 6.90 37.75 0.26 -1.92 16 13 C -0.06 -3.20 10.85 85.42 0.93 -2.28 16 14 N -0.31 -18.90 10.40 -56.46 -0.59 -19.48 16 15 N -0.17 -9.22 3.74 -189.99 -0.71 -9.93 16 16 C -0.35 -18.66 10.25 84.01 0.86 -17.80 16 17 H 0.14 6.45 7.83 -2.91 -0.02 6.43 16 18 C -0.01 -0.39 5.50 84.95 0.47 0.08 16 19 N -0.82 -47.86 11.81 21.66 0.26 -47.61 16 20 Si 1.02 38.52 29.55 68.60 2.03 40.55 16 21 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 22 H -0.28 -10.47 7.11 99.48 0.71 -9.76 16 23 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 24 C -0.08 -3.54 11.50 83.38 0.96 -2.58 16 25 S 0.23 5.45 21.38 -56.49 -1.21 4.25 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.06 0.68 7.92 -2.39 -0.02 0.67 16 30 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.06 0.69 7.92 -2.39 -0.02 0.67 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.21 3.38 7.15 -2.91 -0.02 3.36 16 36 H 0.42 10.87 7.53 -92.70 -0.70 10.18 16 37 H 0.17 9.38 5.91 -2.91 -0.02 9.36 16 38 H 0.28 14.81 8.31 -92.71 -0.77 14.04 16 39 H 0.19 6.83 8.06 -2.91 -0.02 6.80 16 Total: -1.00 -77.82 347.23 3.88 -73.94 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: 0.39 Total: 29.94 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: 7.44 Total: -8.90 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -4.71 Total: -113.13 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.06 Total: -26.64 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Atomic # 16 Polarization: 5.45 SS G_CDS: -1.21 Total: 4.25 kcal Total: -77.82 3.88 -73.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139273547.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.977 kcal (2) G-P(sol) polarization free energy of solvation -77.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds