Wall clock time and date at job start Tue Mar 31 2020 13:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47017 * 2 1 4 4 N 1.46497 * 109.47483 * 179.97438 * 3 2 1 5 5 C 1.37092 * 120.00160 * 270.00365 * 4 3 2 6 6 H 1.08005 * 120.00517 * 143.59278 * 5 4 3 7 7 C 1.38949 * 119.99770 * 323.59339 * 5 4 3 8 8 N 1.31411 * 120.00108 * 159.59958 * 7 5 4 9 9 Si 1.86800 * 120.00060 * 339.59823 * 7 5 4 10 10 H 1.48501 * 109.47345 * 95.35670 * 9 7 5 11 11 H 1.48500 * 109.47016 * 215.35516 * 9 7 5 12 12 H 1.48494 * 109.47125 * 335.35238 * 9 7 5 13 13 C 1.34773 * 120.00090 * 89.99838 * 4 3 2 14 14 O 1.21299 * 120.00022 * 354.71093 * 13 4 3 15 15 C 1.50703 * 120.00279 * 174.71598 * 13 4 3 16 16 S 1.81397 * 109.47193 * 184.91802 * 15 13 4 17 17 C 1.76196 * 103.00049 * 184.64728 * 16 15 13 18 18 N 1.31411 * 126.34060 * 354.64029 * 17 16 15 19 19 N 1.28658 * 110.30057 * 180.02562 * 18 17 16 20 20 C 1.32015 * 109.69544 * 359.97438 * 19 18 17 21 21 C 1.40942 * 133.51941 * 180.02562 * 20 19 18 22 22 C 1.35919 * 119.24223 * 180.25421 * 21 20 19 23 23 C 1.40739 * 119.86442 * 359.44156 * 22 21 20 24 24 C 1.34806 * 120.43527 * 0.59946 * 23 22 21 25 25 N 1.36359 * 126.34234 * 174.68127 * 17 16 15 26 26 H 1.09001 * 109.47442 * 299.99642 * 1 2 3 27 27 H 1.09002 * 109.47374 * 60.00110 * 1 2 3 28 28 H 1.08999 * 109.46899 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47214 * 240.00060 * 2 1 3 30 30 H 1.09002 * 109.47374 * 119.99890 * 2 1 3 31 31 H 1.09001 * 109.47465 * 59.99913 * 3 2 1 32 32 H 1.09002 * 109.46958 * 300.00144 * 3 2 1 33 33 H 0.97006 * 120.00406 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.47371 * 64.91685 * 15 13 4 35 35 H 1.09007 * 109.46623 * 304.91387 * 15 13 4 36 36 H 1.07996 * 120.38166 * 359.96730 * 21 20 19 37 37 H 1.08003 * 120.06708 * 179.72242 * 22 21 20 38 38 H 1.08004 * 119.78560 * 180.30090 * 23 22 21 39 39 H 1.07999 * 119.76806 * 179.69222 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1899 1.4427 1.1881 6 1 5.1119 0.8877 1.2799 7 6 3.6981 2.1570 2.2738 8 7 4.0949 1.8591 3.4906 9 14 2.4726 3.5408 2.0036 10 1 1.0927 3.0218 2.1815 11 1 2.7247 4.6242 2.9874 12 1 2.6265 4.0764 0.6272 13 6 4.1793 1.4424 -1.1663 14 8 3.5772 1.3454 -2.2148 15 6 5.6815 1.5627 -1.1685 16 16 6.2764 1.6782 -2.8782 17 6 8.0282 1.6713 -2.6897 18 7 8.6894 1.6971 -1.5544 19 7 9.9567 1.6831 -1.7754 20 6 10.1812 1.6467 -3.0759 21 6 11.3533 1.6177 -3.8580 22 6 11.2470 1.5874 -5.2127 23 6 9.9754 1.5733 -5.8157 24 6 8.8603 1.6019 -5.0587 25 7 8.9490 1.6390 -3.6950 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.7513 2.3575 4.2486 34 1 6.1170 0.6852 -0.6908 35 1 5.9751 2.4581 -0.6204 36 1 12.3249 1.6243 -3.3865 37 1 12.1364 1.5695 -5.8250 38 1 9.8924 1.5443 -6.8922 39 1 7.8900 1.5958 -5.5330 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183199963.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:40 Heat of formation + Delta-G solvation = 67.298672 kcal Electronic energy + Delta-G solvation = -23702.169444 eV Core-core repulsion = 20158.810057 eV Total energy + Delta-G solvation = -3543.359387 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.49404 -40.84996 -39.15647 -37.30469 -35.01898 -34.81329 -33.68660 -32.34550 -31.12662 -30.38772 -27.51463 -26.54227 -25.23305 -24.66057 -23.81115 -22.83584 -21.21032 -19.92742 -18.85676 -18.54668 -18.17962 -17.77117 -17.59432 -17.32403 -16.54717 -16.35776 -15.87936 -15.79081 -15.70859 -14.86244 -14.73611 -14.63457 -14.12897 -13.82883 -13.65807 -13.53556 -13.37438 -13.23233 -13.14248 -12.60311 -12.59596 -12.52454 -12.51621 -12.25073 -12.12382 -11.91753 -11.56966 -11.49842 -11.12420 -10.90092 -10.70901 -9.91376 -9.80739 -8.59082 -8.52428 -6.23429 -0.33424 -0.28535 -0.02968 0.87603 1.14696 1.27595 1.39255 1.44270 1.44721 1.65052 2.11389 2.34272 2.48926 2.86141 3.11890 3.44566 3.71674 3.80533 3.86642 3.98540 4.01088 4.08058 4.14165 4.35938 4.41301 4.45828 4.52846 4.62421 4.64822 4.87855 4.91856 5.00442 5.10918 5.14304 5.22195 5.23822 5.40975 5.45078 5.76877 5.93011 6.12703 6.80966 7.20563 7.25538 7.55776 8.54781 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.020487 B = 0.003280 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.375967 B = 8534.277522 C = 9410.450635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.097 3.903 4 N -0.458 5.458 5 C -0.353 4.353 6 H 0.081 0.919 7 C 0.034 3.966 8 N -0.889 5.889 9 Si 0.929 3.071 10 H -0.249 1.249 11 H -0.284 1.284 12 H -0.265 1.265 13 C 0.491 3.509 14 O -0.597 6.597 15 C -0.103 4.103 16 S 0.079 5.921 17 C 0.097 3.903 18 N -0.289 5.289 19 N -0.337 5.337 20 C 0.189 3.811 21 C -0.105 4.105 22 C -0.054 4.054 23 C -0.114 4.114 24 C 0.039 3.961 25 N -0.380 5.380 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.283 0.717 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.176 0.824 37 H 0.199 0.801 38 H 0.207 0.793 39 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.256 -0.045 -19.882 21.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.165 4.165 3 C -0.025 4.025 4 N -0.178 5.178 5 C -0.480 4.480 6 H 0.098 0.902 7 C -0.172 4.172 8 N -0.525 5.525 9 Si 0.754 3.246 10 H -0.174 1.174 11 H -0.211 1.211 12 H -0.189 1.189 13 C 0.279 3.721 14 O -0.483 6.483 15 C -0.255 4.255 16 S 0.306 5.694 17 C -0.274 4.274 18 N -0.133 5.133 19 N -0.182 5.182 20 C -0.063 4.063 21 C -0.126 4.126 22 C -0.079 4.079 23 C -0.135 4.135 24 C -0.082 4.082 25 N -0.062 5.062 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.194 0.806 37 H 0.216 0.784 38 H 0.223 0.777 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 7.466 0.042 -19.418 20.804 hybrid contribution 0.159 0.451 1.022 1.128 sum 7.625 0.493 -18.396 19.920 Atomic orbital electron populations 1.21682 0.93059 1.02959 1.02204 1.21699 0.97623 0.95600 1.01557 1.21902 0.80599 0.98831 1.01203 1.43725 1.05170 1.64075 1.04828 1.18954 1.09745 1.31974 0.87362 0.90160 1.25896 0.98812 0.98253 0.94193 1.69811 1.44382 1.39213 0.99045 0.86112 0.80003 0.79702 0.78772 1.17448 1.21099 1.18911 1.19586 0.87982 0.80805 0.83731 1.90560 1.70077 1.56357 1.31325 1.23345 0.97015 1.08180 0.96930 1.85261 0.82739 1.92373 1.09031 1.26982 1.00373 1.13897 0.86156 1.74591 0.99424 1.17367 1.21910 1.74531 1.07434 1.24005 1.12254 1.23199 0.88123 1.04694 0.90276 1.20749 0.94557 1.03510 0.93830 1.21868 1.00025 0.92954 0.93050 1.21662 0.89789 0.98939 1.03079 1.22532 1.04579 1.03061 0.78066 1.43761 1.06551 1.47914 1.07961 0.92600 0.91715 0.90747 0.92518 0.92759 0.91953 0.90547 0.90713 0.87542 0.87038 0.80639 0.78443 0.77656 0.79617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 9.91 71.98 0.71 -3.35 16 2 C -0.13 -4.76 6.26 30.59 0.19 -4.57 16 3 C 0.10 4.15 4.16 86.38 0.36 4.50 16 4 N -0.46 -22.08 2.21 -635.54 -1.40 -23.48 16 5 C -0.35 -18.74 9.03 84.04 0.76 -17.98 16 6 H 0.08 4.63 7.35 -2.91 -0.02 4.60 16 7 C 0.03 1.81 5.34 84.93 0.45 2.27 16 8 N -0.89 -49.66 13.96 21.66 0.30 -49.35 16 9 Si 0.93 41.32 24.85 68.60 1.70 43.02 16 10 H -0.25 -10.11 6.70 99.48 0.67 -9.44 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 13 C 0.49 22.87 7.63 87.66 0.67 23.54 16 14 O -0.60 -28.42 15.51 -3.09 -0.05 -28.47 16 15 C -0.10 -4.41 4.79 71.24 0.34 -4.07 16 16 S 0.08 2.83 21.25 -56.49 -1.20 1.63 16 17 C 0.10 3.54 8.22 179.57 1.48 5.02 16 18 N -0.29 -12.32 11.81 -56.90 -0.67 -12.99 16 19 N -0.34 -13.23 12.28 -55.12 -0.68 -13.90 16 20 C 0.19 5.62 7.93 134.00 1.06 6.68 16 21 C -0.11 -1.80 10.11 22.39 0.23 -1.57 16 22 C -0.05 -0.44 10.06 22.34 0.22 -0.22 16 23 C -0.11 -0.95 9.98 22.09 0.22 -0.73 16 24 C 0.04 0.67 10.96 83.14 0.91 1.58 16 25 N -0.38 -10.94 2.98 -352.29 -1.05 -11.99 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.06 2.69 2.96 -2.39 -0.01 2.68 16 32 H 0.08 3.16 7.50 -2.39 -0.02 3.14 16 33 H 0.28 14.63 8.31 -92.70 -0.77 13.86 16 34 H 0.11 4.68 7.77 -2.39 -0.02 4.66 16 35 H 0.11 4.95 8.04 -2.39 -0.02 4.93 16 36 H 0.18 2.19 8.06 -2.91 -0.02 2.16 16 37 H 0.20 -0.28 8.06 -2.91 -0.02 -0.30 16 38 H 0.21 -0.23 8.06 -2.91 -0.02 -0.26 16 39 H 0.19 2.50 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -75.06 345.05 5.60 -69.46 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 1.03 Total: 14.98 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 7.61 Total: 11.10 kcal Atomic # 7 Polarization: -108.22 SS G_CDS: -3.50 Total: -111.72 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.05 Total: -28.47 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 1.70 Total: 43.02 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -1.20 Total: 1.63 kcal Total: -75.06 5.60 -69.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183199963.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.754 kcal (2) G-P(sol) polarization free energy of solvation -75.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds