Wall clock time and date at job start Tue Mar 31 2020 13:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47067 * 2 1 4 4 H 1.09002 * 109.46768 * 55.00499 * 3 2 1 5 5 C 1.50695 * 109.47014 * 175.00289 * 3 2 1 6 6 H 1.08008 * 120.00361 * 120.00034 * 5 3 2 7 7 C 1.37879 * 119.99959 * 300.00186 * 5 3 2 8 8 N 1.31506 * 120.00041 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99880 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47001 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.46991 * 120.00092 * 9 7 5 12 12 H 1.48509 * 109.46913 * 240.00001 * 9 7 5 13 13 N 1.46499 * 109.47355 * 295.00180 * 3 2 1 14 14 C 1.34780 * 119.99974 * 84.99834 * 13 3 2 15 15 O 1.21671 * 119.99821 * 355.64881 * 14 13 3 16 16 C 1.46867 * 120.00218 * 175.64470 * 14 13 3 17 17 C 1.36031 * 125.45734 * 99.63415 * 16 14 13 18 18 Cl 1.73605 * 126.15138 * 0.02562 * 17 16 14 19 19 C 1.41712 * 107.70139 * 179.84861 * 17 16 14 20 20 C 1.40082 * 133.33894 * 180.16756 * 19 17 16 21 21 C 1.36452 * 119.83317 * 180.33635 * 20 19 17 22 22 C 1.38927 * 120.61122 * 359.95289 * 21 20 19 23 23 C 1.37677 * 120.64103 * 359.97438 * 22 21 20 24 24 C 1.39230 * 119.81242 * 0.02562 * 23 22 21 25 25 N 1.37504 * 133.13166 * 179.97438 * 24 23 22 26 26 C 1.46503 * 125.60297 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.46771 * 299.99972 * 1 2 3 28 28 H 1.08997 * 109.47070 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47391 * 59.99608 * 1 2 3 30 30 H 1.08990 * 109.47433 * 120.00083 * 2 1 3 31 31 H 1.09000 * 109.47027 * 240.00514 * 2 1 3 32 32 H 0.97010 * 120.00000 * 179.97438 * 8 7 5 33 33 H 0.96994 * 120.00562 * 264.99861 * 13 3 2 34 34 H 1.07998 * 120.08164 * 0.32982 * 20 19 17 35 35 H 1.07997 * 119.69068 * 179.97438 * 21 20 19 36 36 H 1.07996 * 119.67871 * 180.02562 * 22 21 20 37 37 H 1.08001 * 120.09244 * 180.02562 * 23 22 21 38 38 H 1.09002 * 109.47005 * 274.98506 * 26 25 24 39 39 H 1.08996 * 109.47453 * 34.99126 * 26 25 24 40 40 H 1.09000 * 109.47068 * 154.99220 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5418 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8784 1.2279 8 7 3.4063 0.3365 2.1727 9 14 6.0050 0.8812 1.3816 10 1 6.5987 1.5463 0.1940 11 1 6.3991 1.6166 2.6100 12 1 6.4971 -0.5176 1.4627 13 7 1.6524 2.0976 -1.2518 14 6 0.4351 2.6645 -1.3669 15 8 -0.3710 2.5639 -0.4610 16 6 0.0815 3.4037 -2.5857 17 6 -0.6622 2.9175 -3.6157 18 17 -1.3541 1.3287 -3.7187 19 6 -0.7741 3.9426 -4.5878 20 6 -1.4115 4.0215 -5.8327 21 6 -1.3349 5.1717 -6.5628 22 6 -0.6304 6.2687 -6.0829 23 6 0.0032 6.2162 -4.8617 24 6 -0.0605 5.0536 -4.0983 25 7 0.4553 4.7044 -2.8724 26 6 1.2692 5.5672 -2.0125 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8295 -0.0620 2.9493 33 1 2.2718 2.1233 -1.9977 34 1 -1.9621 3.1741 -6.2137 35 1 -1.8269 5.2299 -7.5225 36 1 -0.5799 7.1717 -6.6731 37 1 0.5481 7.0743 -4.4970 38 1 2.3141 5.5004 -2.3154 39 1 0.9289 6.5984 -2.1060 40 1 1.1701 5.2445 -0.9760 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273817778.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:17 Heat of formation + Delta-G solvation = -1.394796 kcal Electronic energy + Delta-G solvation = -24631.577122 eV Core-core repulsion = 21050.902505 eV Total energy + Delta-G solvation = -3580.674617 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.103 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.72903 -40.60526 -37.99971 -37.57856 -36.97643 -34.38051 -33.95656 -32.93668 -31.32073 -30.36480 -28.87426 -27.33783 -25.58688 -24.51560 -22.71182 -22.38544 -21.57864 -21.04337 -19.28732 -18.14922 -17.93892 -17.47085 -17.26074 -16.54099 -16.28858 -16.10299 -15.54189 -15.26845 -14.91012 -14.86472 -14.63473 -14.48036 -14.16380 -13.77524 -13.54009 -13.46614 -13.20511 -13.08785 -12.92407 -12.78859 -12.72098 -12.21119 -12.17237 -12.08176 -12.04341 -11.81910 -11.56022 -11.10299 -11.07411 -10.58794 -10.56798 -9.81132 -9.28027 -8.69940 -8.18263 -6.35957 -0.15196 0.61777 0.84833 1.16630 1.36066 1.43609 1.45601 1.56584 1.91951 2.32578 2.52107 2.90123 3.11627 3.59534 3.62554 3.75450 4.10435 4.23062 4.29088 4.32846 4.47395 4.50165 4.55769 4.56878 4.58297 4.74101 4.75825 5.03912 5.06119 5.24232 5.36203 5.39400 5.43183 5.49861 5.56225 5.60240 5.66664 5.73397 5.82071 5.94872 6.11358 6.17672 6.67483 6.74162 7.18438 7.38026 8.87265 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.017594 B = 0.003934 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.102537 B = 7115.295431 C = 8083.262938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.121 4.121 3 C 0.281 3.719 4 H 0.006 0.994 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.970 3.030 10 H -0.261 1.261 11 H -0.282 1.282 12 H -0.281 1.281 13 N -0.684 5.684 14 C 0.575 3.425 15 O -0.558 6.558 16 C 0.035 3.965 17 C -0.088 4.088 18 Cl -0.041 7.041 19 C -0.125 4.125 20 C -0.077 4.077 21 C -0.138 4.138 22 C -0.082 4.082 23 C -0.130 4.130 24 C 0.099 3.901 25 N -0.454 5.454 26 C 0.071 3.929 27 H 0.028 0.972 28 H 0.042 0.958 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.266 0.734 33 H 0.402 0.598 34 H 0.131 0.869 35 H 0.155 0.845 36 H 0.165 0.835 37 H 0.150 0.850 38 H 0.095 0.905 39 H 0.118 0.882 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.095 12.298 -17.671 22.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.160 4.160 3 C 0.179 3.821 4 H 0.024 0.976 5 C -0.586 4.586 6 H 0.090 0.910 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.794 3.206 10 H -0.185 1.185 11 H -0.208 1.208 12 H -0.206 1.206 13 N -0.332 5.332 14 C 0.358 3.642 15 O -0.436 6.436 16 C -0.077 4.077 17 C -0.123 4.123 18 Cl -0.012 7.012 19 C -0.130 4.130 20 C -0.096 4.096 21 C -0.157 4.157 22 C -0.101 4.101 23 C -0.150 4.150 24 C -0.009 4.009 25 N -0.137 5.137 26 C -0.069 4.069 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.237 0.763 34 H 0.149 0.851 35 H 0.173 0.827 36 H 0.182 0.818 37 H 0.168 0.832 38 H 0.113 0.887 39 H 0.137 0.863 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.458 12.188 -16.552 21.267 hybrid contribution 0.936 -0.756 0.602 1.345 sum -4.523 11.431 -15.950 20.138 Atomic orbital electron populations 1.21759 0.97054 0.99123 1.00657 1.21798 0.93679 0.99117 1.01390 1.18512 0.94023 0.89242 0.80327 0.97569 1.21521 0.90928 1.39336 1.06769 0.91007 1.25720 1.03192 0.94217 0.94950 1.70045 1.37022 1.38071 1.09879 0.85333 0.79157 0.77815 0.78245 1.18494 1.20817 1.20646 1.46325 1.14149 1.54813 1.17899 1.17281 0.82650 0.79532 0.84701 1.90831 1.49994 1.62068 1.40720 1.19824 1.04400 0.87184 0.96331 1.20038 1.06208 0.89196 0.96903 1.98325 1.83189 1.21686 1.98031 1.18078 1.05252 0.92377 0.97253 1.20583 0.97865 0.99656 0.91452 1.21038 1.00967 0.92445 1.01212 1.21361 0.94860 0.99625 0.94260 1.20441 1.04218 0.94996 0.95324 1.18616 0.99071 0.96981 0.86229 1.44059 1.43714 1.09629 1.16338 1.22318 0.95785 0.95242 0.93529 0.95314 0.93898 0.93396 0.90600 0.94263 0.92491 0.76336 0.85114 0.82714 0.81775 0.83243 0.88707 0.86320 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.01 8.46 71.98 0.61 -5.41 16 2 C -0.12 -6.02 5.45 30.60 0.17 -5.86 16 3 C 0.28 14.22 2.24 44.25 0.10 14.32 16 4 H 0.01 0.38 7.64 -2.39 -0.02 0.36 16 5 C -0.55 -28.20 8.73 25.60 0.22 -27.97 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.45 16 7 C 0.02 1.04 5.29 84.66 0.45 1.49 16 8 N -0.91 -51.02 11.29 21.45 0.24 -50.78 16 9 Si 0.97 41.07 29.54 68.60 2.03 43.09 16 10 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 13 N -0.68 -28.92 5.02 -449.89 -2.26 -31.17 16 14 C 0.58 24.08 5.35 86.50 0.46 24.54 16 15 O -0.56 -27.45 13.91 -4.26 -0.06 -27.51 16 16 C 0.04 1.25 6.56 39.86 0.26 1.51 16 17 C -0.09 -2.95 6.73 22.61 0.15 -2.80 16 18 Cl -0.04 -1.35 29.03 -2.72 -0.08 -1.43 16 19 C -0.13 -3.53 6.16 -21.34 -0.13 -3.66 16 20 C -0.08 -1.68 10.06 22.30 0.22 -1.46 16 21 C -0.14 -2.14 9.97 22.02 0.22 -1.92 16 22 C -0.08 -1.12 10.01 22.30 0.22 -0.90 16 23 C -0.13 -2.27 10.00 22.38 0.22 -2.05 16 24 C 0.10 2.52 6.81 39.12 0.27 2.79 16 25 N -0.45 -12.98 3.23 -526.18 -1.70 -14.67 16 26 C 0.07 1.57 10.93 127.77 1.40 2.97 16 27 H 0.03 1.42 7.80 -2.39 -0.02 1.40 16 28 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.05 2.20 5.54 -2.39 -0.01 2.19 16 30 H 0.08 4.18 5.95 -2.39 -0.01 4.17 16 31 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.27 14.07 8.31 -92.70 -0.77 13.30 16 33 H 0.40 15.20 8.52 -92.71 -0.79 14.41 16 34 H 0.13 2.58 8.06 -2.91 -0.02 2.55 16 35 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 36 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 37 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 38 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.07 1.84 7.64 -2.39 -0.02 1.82 16 Total: -1.00 -67.22 350.02 3.30 -63.91 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.28 Total: 22.96 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 4.84 Total: -4.41 kcal Atomic # 7 Polarization: -92.91 SS G_CDS: -3.71 Total: -96.63 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.06 Total: -27.51 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.09 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.08 Total: -1.43 kcal Total: -67.22 3.30 -63.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273817778.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.518 kcal (2) G-P(sol) polarization free energy of solvation -67.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds