Wall clock time and date at job start Tue Mar 31 2020 13:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47233 * 260.79598 * 3 2 1 5 5 C 1.36939 * 119.99675 * 263.91985 * 4 3 2 6 6 H 1.08000 * 119.99398 * 199.38603 * 5 4 3 7 7 C 1.38811 * 120.00432 * 19.38560 * 5 4 3 8 8 N 1.31616 * 119.99638 * 22.27978 * 7 5 4 9 9 Si 1.86797 * 120.00166 * 202.28500 * 7 5 4 10 10 H 1.48502 * 109.47253 * 59.99901 * 9 7 5 11 11 H 1.48497 * 109.47121 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47102 * 299.99934 * 9 7 5 13 13 C 1.46494 * 120.00082 * 83.91675 * 4 3 2 14 14 C 1.50696 * 109.47188 * 90.00196 * 13 4 3 15 15 O 1.21276 * 120.00412 * 0.02562 * 14 13 4 16 16 N 1.34779 * 119.99934 * 179.72766 * 14 13 4 17 17 C 1.46494 * 120.00057 * 180.02562 * 16 14 13 18 18 H 1.08997 * 109.47105 * 324.99425 * 17 16 14 19 19 C 1.53009 * 109.47451 * 84.99705 * 17 16 14 20 20 C 1.50703 * 109.47218 * 204.99421 * 17 16 14 21 21 C 1.38242 * 119.98660 * 319.72949 * 20 17 16 22 22 C 1.38214 * 120.00936 * 179.72275 * 21 20 17 23 23 C 1.38352 * 119.98735 * 0.54490 * 22 21 20 24 24 Cl 1.73605 * 120.01258 * 179.70040 * 23 22 21 25 25 C 1.38354 * 119.97360 * 359.72967 * 23 22 21 26 26 C 1.38213 * 119.98489 * 359.97438 * 25 23 22 27 27 H 4.40647 * 5.51392 * 179.97438 * 4 1 2 28 28 H 1.09005 * 109.47465 * 140.79542 * 3 2 1 29 29 H 1.09003 * 109.47514 * 20.79557 * 3 2 1 30 30 H 0.97005 * 119.99704 * 180.02562 * 8 7 5 31 31 H 1.09008 * 109.46966 * 329.99798 * 13 4 3 32 32 H 1.09002 * 109.46927 * 210.00233 * 13 4 3 33 33 H 0.96997 * 119.99868 * 359.97438 * 16 14 13 34 34 H 1.08994 * 109.46719 * 59.99922 * 19 17 16 35 35 H 1.08999 * 109.46899 * 180.02562 * 19 17 16 36 36 H 1.09004 * 109.46762 * 300.00511 * 19 17 16 37 37 H 1.07998 * 119.99251 * 359.97438 * 21 20 17 38 38 H 1.07998 * 120.00434 * 180.26461 * 22 21 20 39 39 H 1.08006 * 120.00445 * 179.97438 * 25 23 22 40 40 H 1.08006 * 119.98920 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1342 0.2218 1.3635 5 6 3.4803 1.4826 1.7707 6 1 4.1186 1.6157 2.6316 7 6 3.0107 2.5895 1.0770 8 7 1.9263 2.4912 0.3376 9 14 3.9179 4.2183 1.1928 10 1 5.3073 4.0473 0.6973 11 1 3.2191 5.2339 0.3650 12 1 3.9487 4.6682 2.6077 13 6 3.2521 -0.9058 2.2912 14 6 4.6246 -1.5158 2.1686 15 8 5.4257 -1.0538 1.3839 16 7 4.9641 -2.5710 2.9352 17 6 6.2985 -3.1636 2.8164 18 1 6.6275 -3.1129 1.7785 19 6 7.2800 -2.3919 3.7009 20 6 6.2498 -4.6037 3.2581 21 6 5.4952 -4.9635 4.3592 22 6 5.4456 -6.2850 4.7612 23 6 6.1603 -7.2459 4.0683 24 17 6.1046 -8.9046 4.5775 25 6 6.9197 -6.8842 2.9699 26 6 6.9637 -5.5634 2.5651 27 1 -1.0501 0.0002 -0.0002 28 1 3.0090 0.7972 -0.6496 29 1 3.0098 -0.9599 -0.3649 30 1 1.5983 3.2646 -0.1474 31 1 2.4984 -1.6553 2.0497 32 1 3.1007 -0.5540 3.3117 33 1 4.3250 -2.9375 3.5662 34 1 6.9509 -2.4427 4.7388 35 1 8.2729 -2.8327 3.6121 36 1 7.3152 -1.3503 3.3815 37 1 4.9412 -4.2126 4.9028 38 1 4.8528 -6.5666 5.6188 39 1 7.4781 -7.6339 2.4289 40 1 7.5562 -5.2810 1.7074 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281253392.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:57 Heat of formation + Delta-G solvation = 49.038440 kcal Electronic energy + Delta-G solvation = -23586.602924 eV Core-core repulsion = 20008.115257 eV Total energy + Delta-G solvation = -3578.487668 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.103 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.09326 -40.00182 -37.80235 -37.40278 -36.13191 -33.52030 -33.24774 -32.48491 -31.98872 -30.11648 -28.71637 -27.82651 -25.04495 -24.10549 -23.63703 -21.83292 -21.09099 -19.35831 -18.74759 -18.09256 -17.67574 -17.26495 -16.79538 -16.24824 -16.07594 -15.77994 -15.37011 -15.16482 -15.07108 -14.68404 -14.45780 -14.44178 -14.17082 -13.87644 -13.45990 -13.30335 -13.17378 -12.82837 -12.72864 -12.51435 -12.50365 -12.27072 -12.21844 -12.00280 -11.95840 -11.74403 -11.04158 -10.78627 -10.57213 -10.31606 -10.04286 -9.99955 -9.58625 -8.92787 -7.84318 -5.26154 0.08443 0.31387 1.15676 1.44864 1.50319 1.56101 1.91630 2.17463 2.43793 2.53338 2.60388 2.68155 3.30063 3.55958 3.78538 3.80910 3.94778 4.07311 4.20381 4.25476 4.31628 4.41822 4.49357 4.60444 4.68384 4.70336 4.76120 4.92541 4.94500 5.01183 5.16810 5.24506 5.25748 5.27695 5.44687 5.63001 5.66448 5.71320 5.78456 6.25252 6.73017 7.07599 7.36777 7.52356 7.80291 8.21023 9.16976 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.021896 B = 0.002608 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.443369 B =10734.388444 C =11516.507552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.138 4.138 3 C 0.278 3.722 4 N -0.578 5.578 5 C -0.264 4.264 6 H 0.066 0.934 7 C -0.041 4.041 8 N -0.907 5.907 9 Si 0.955 3.045 10 H -0.290 1.290 11 H -0.294 1.294 12 H -0.275 1.275 13 C 0.129 3.871 14 C 0.488 3.512 15 O -0.569 6.569 16 N -0.719 5.719 17 C 0.184 3.816 18 H 0.074 0.926 19 C -0.151 4.151 20 C -0.086 4.086 21 C -0.101 4.101 22 C -0.108 4.108 23 C -0.046 4.046 24 Cl -0.073 7.073 25 C -0.110 4.110 26 C -0.102 4.102 27 H 0.226 0.774 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.248 0.752 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.410 0.590 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.038 0.962 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.148 0.852 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.374 -21.388 9.740 24.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.141 4.141 3 C 0.152 3.848 4 N -0.296 5.296 5 C -0.394 4.394 6 H 0.084 0.916 7 C -0.238 4.238 8 N -0.551 5.551 9 Si 0.784 3.216 10 H -0.217 1.217 11 H -0.220 1.220 12 H -0.201 1.201 13 C -0.001 4.001 14 C 0.273 3.727 15 O -0.446 6.446 16 N -0.375 5.375 17 C 0.079 3.921 18 H 0.092 0.908 19 C -0.210 4.210 20 C -0.087 4.087 21 C -0.119 4.119 22 C -0.126 4.126 23 C -0.073 4.073 24 Cl -0.044 7.044 25 C -0.129 4.129 26 C -0.121 4.121 27 H 0.243 0.757 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.248 0.752 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.167 0.833 38 H 0.169 0.831 39 H 0.166 0.834 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.876 -21.034 9.130 24.245 hybrid contribution -0.009 0.929 0.070 0.932 sum 7.867 -20.105 9.200 23.468 Atomic orbital electron populations 1.24998 0.96216 1.06332 1.02182 1.24396 0.95757 0.95459 0.98440 1.17432 0.83231 0.97439 0.86685 1.43647 1.74072 1.03402 1.08524 1.19221 1.23594 0.83109 1.13453 0.91626 1.25487 0.96879 1.00384 1.01004 1.70261 1.20284 1.29946 1.34623 0.85532 0.78182 0.80250 0.77607 1.21658 1.21971 1.20066 1.20876 0.92029 0.90981 0.96219 1.22748 0.91577 0.79190 0.79160 1.90630 1.53306 1.61820 1.38840 1.46196 1.15581 1.32979 1.42776 1.19668 0.83800 0.88542 1.00069 0.90755 1.22099 0.99330 0.99500 1.00034 1.19996 0.98175 0.94178 0.96304 1.21107 0.98646 0.96139 0.96018 1.21250 0.99063 0.91841 1.00478 1.21144 1.01931 0.85901 0.98327 1.98376 1.97634 1.17856 1.90582 1.21217 0.98928 0.96940 0.95778 1.21164 0.99124 0.91770 1.00000 0.75733 0.92331 0.93097 0.94263 0.89088 0.88879 0.75235 0.90980 0.90358 0.94265 0.83315 0.83141 0.83447 0.83945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.10 19.25 74.32 1.43 -10.67 16 2 C -0.14 -6.66 11.50 31.12 0.36 -6.30 16 3 C 0.28 13.77 5.41 84.57 0.46 14.23 16 4 N -0.58 -28.55 1.98 -716.90 -1.42 -29.96 16 5 C -0.26 -14.50 9.63 84.03 0.81 -13.69 16 6 H 0.07 3.58 7.92 -2.91 -0.02 3.55 16 7 C -0.04 -2.28 4.82 84.86 0.41 -1.87 16 8 N -0.91 -52.51 9.61 21.65 0.21 -52.30 16 9 Si 0.96 45.88 29.61 68.60 2.03 47.91 16 10 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 11 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 12 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 13 C 0.13 4.86 6.15 85.63 0.53 5.39 16 14 C 0.49 17.42 7.86 87.66 0.69 18.11 16 15 O -0.57 -25.97 16.09 -3.02 -0.05 -26.02 16 16 N -0.72 -17.75 5.03 -446.10 -2.24 -19.99 16 17 C 0.18 4.15 2.77 44.25 0.12 4.28 16 18 H 0.07 2.02 7.44 -2.39 -0.02 2.01 16 19 C -0.15 -3.29 9.46 71.99 0.68 -2.61 16 20 C -0.09 -1.50 4.95 -19.86 -0.10 -1.60 16 21 C -0.10 -1.46 9.05 22.27 0.20 -1.25 16 22 C -0.11 -1.50 9.83 22.29 0.22 -1.29 16 23 C -0.05 -0.72 6.32 22.32 0.14 -0.58 16 24 Cl -0.07 -1.10 28.96 -2.72 -0.08 -1.17 16 25 C -0.11 -1.64 9.83 22.29 0.22 -1.42 16 26 C -0.10 -1.65 9.67 22.26 0.22 -1.43 16 27 H 0.23 7.74 7.80 -4.41 -0.03 7.70 16 28 H 0.06 3.29 6.59 -2.38 -0.02 3.27 16 29 H 0.05 2.31 8.12 -2.39 -0.02 2.29 16 30 H 0.25 14.18 8.31 -92.70 -0.77 13.41 16 31 H 0.09 2.99 8.07 -2.38 -0.02 2.97 16 32 H 0.09 3.23 8.04 -2.39 -0.02 3.21 16 33 H 0.41 7.37 6.88 -92.71 -0.64 6.73 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.15 1.60 6.93 -2.91 -0.02 1.58 16 38 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 39 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 40 H 0.14 1.99 8.04 -2.91 -0.02 1.96 16 Total: -1.00 -70.50 363.79 5.25 -65.25 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.41 Total: 16.99 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: 6.38 Total: -0.70 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -3.45 Total: -102.26 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.05 Total: -26.02 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.17 kcal Total: -70.50 5.25 -65.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281253392.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.288 kcal (2) G-P(sol) polarization free energy of solvation -70.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds