Wall clock time and date at job start Tue Mar 31 2020 12:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47086 * 216.59977 * 3 2 1 5 5 C 1.36935 * 120.00185 * 263.22932 * 4 3 2 6 6 H 1.08006 * 119.99616 * 202.15589 * 5 4 3 7 7 C 1.38809 * 120.00183 * 22.15888 * 5 4 3 8 8 N 1.31621 * 120.00216 * 7.95233 * 7 5 4 9 9 Si 1.86800 * 119.99918 * 187.95278 * 7 5 4 10 10 H 1.48502 * 109.47209 * 60.00242 * 9 7 5 11 11 H 1.48504 * 109.46986 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47307 * 299.99777 * 9 7 5 13 13 C 1.46503 * 119.99554 * 83.22540 * 4 3 2 14 14 C 1.50700 * 109.47223 * 90.00468 * 13 4 3 15 15 O 1.21288 * 119.99734 * 359.97438 * 14 13 4 16 16 N 1.34776 * 120.00292 * 179.72765 * 14 13 4 17 17 C 1.39973 * 120.00181 * 176.62724 * 16 14 13 18 18 C 1.38853 * 120.07434 * 137.95114 * 17 16 14 19 19 C 1.50692 * 120.02903 * 359.97438 * 18 17 16 20 20 C 1.38123 * 119.93943 * 179.97438 * 18 17 16 21 21 C 1.38294 * 120.09343 * 0.02562 * 20 18 17 22 22 C 1.50700 * 119.92544 * 179.97438 * 21 20 18 23 23 C 1.38261 * 120.15075 * 0.02562 * 21 20 18 24 24 C 1.38228 * 120.05574 * 359.73930 * 23 21 20 25 25 Cl 1.73606 * 120.04760 * 180.25533 * 24 23 21 26 26 H 4.40644 * 5.51394 * 179.97438 * 4 1 2 27 27 H 1.09005 * 109.46917 * 96.60456 * 3 2 1 28 28 H 1.09000 * 109.47322 * 336.60351 * 3 2 1 29 29 H 0.96990 * 120.00281 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47609 * 330.00205 * 13 4 3 31 31 H 1.09004 * 109.47213 * 210.00163 * 13 4 3 32 32 H 0.97006 * 119.99544 * 356.62282 * 16 14 13 33 33 H 1.09005 * 109.46898 * 90.00317 * 19 18 17 34 34 H 1.09008 * 109.47201 * 209.99501 * 19 18 17 35 35 H 1.09000 * 109.47635 * 330.00007 * 19 18 17 36 36 H 1.07998 * 119.94937 * 180.02562 * 20 18 17 37 37 H 1.08996 * 109.47466 * 90.00008 * 22 21 20 38 38 H 1.09003 * 109.47122 * 210.00431 * 22 21 20 39 39 H 1.09004 * 109.47098 * 329.99570 * 22 21 20 40 40 H 1.07994 * 119.97274 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1339 1.1097 0.8235 5 6 3.4934 2.2929 0.2352 6 1 4.1673 2.9662 0.7442 7 6 2.9918 2.6269 -1.0152 8 7 2.0532 1.8871 -1.5669 9 14 3.6487 4.1262 -1.9151 10 1 5.1071 3.9661 -2.1447 11 1 2.9547 4.2634 -3.2208 12 1 3.4070 5.3408 -1.0955 13 6 3.2370 0.9530 2.2765 14 6 4.6028 0.4225 2.6289 15 8 5.4104 0.1970 1.7525 16 7 4.9286 0.2032 3.9181 17 6 6.1707 -0.3556 4.2409 18 6 6.9001 0.1417 5.3126 19 6 6.3556 1.2848 6.1298 20 6 8.1252 -0.4122 5.6289 21 6 8.6264 -1.4608 4.8795 22 6 9.9637 -2.0619 5.2276 23 6 7.9038 -1.9583 3.8109 24 6 6.6748 -1.4119 3.4918 25 17 5.7646 -2.0411 2.1541 26 1 -1.0501 -0.0001 -0.0003 27 1 3.0093 0.1190 -1.0209 28 1 3.0099 -0.9423 0.4081 29 1 1.7030 2.1203 -2.4408 30 1 2.4754 0.2536 2.6215 31 1 3.0874 1.9195 2.7577 32 1 4.3023 0.4328 4.6224 33 1 5.7600 0.8911 6.9535 34 1 7.1825 1.8730 6.5281 35 1 5.7306 1.9170 5.4992 36 1 8.6925 -0.0257 6.4627 37 1 9.8222 -2.8764 5.9381 38 1 10.4358 -2.4464 4.3235 39 1 10.6007 -1.2977 5.6731 40 1 8.2977 -2.7776 3.2279 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281502042.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:42 Heat of formation + Delta-G solvation = 65.351376 kcal Electronic energy + Delta-G solvation = -24420.896932 eV Core-core repulsion = 20843.116646 eV Total energy + Delta-G solvation = -3577.780286 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.103 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.48453 -39.75713 -37.60941 -37.27578 -35.98744 -33.62736 -33.48691 -33.12355 -32.08970 -29.21334 -28.12513 -27.95411 -26.85296 -24.16948 -23.29465 -21.70322 -21.17982 -19.37310 -18.88971 -18.18390 -17.86720 -17.02535 -16.90613 -16.40334 -15.87485 -15.61199 -15.25768 -15.03190 -14.93757 -14.82093 -14.34477 -14.16334 -13.97546 -13.54107 -13.41121 -13.31286 -13.25524 -13.00764 -12.78195 -12.58340 -12.48346 -12.29483 -12.14474 -12.01155 -11.94306 -11.61014 -11.10395 -10.83112 -10.78177 -10.37533 -10.21323 -9.51137 -8.99592 -8.88327 -7.82200 -5.32944 0.21268 0.24583 1.35932 1.44803 1.48729 1.54030 1.92116 2.12435 2.40786 2.51361 2.59162 2.66822 3.33050 3.74191 3.77694 3.89201 4.03963 4.13766 4.29388 4.29938 4.38265 4.56094 4.59286 4.66435 4.70179 4.84233 4.89276 4.93528 4.93585 5.08414 5.18365 5.30846 5.36199 5.38398 5.56460 5.60112 5.63369 5.67492 5.99753 6.26681 6.60108 7.08471 7.33687 7.46670 7.77657 8.19224 9.18246 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.017042 B = 0.003837 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.642666 B = 7296.146761 C = 7687.581600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.132 4.132 3 C 0.282 3.718 4 N -0.576 5.576 5 C -0.259 4.259 6 H 0.066 0.934 7 C -0.044 4.044 8 N -0.919 5.919 9 Si 0.967 3.033 10 H -0.288 1.288 11 H -0.293 1.293 12 H -0.273 1.273 13 C 0.136 3.864 14 C 0.469 3.531 15 O -0.521 6.521 16 N -0.668 5.668 17 C 0.131 3.869 18 C -0.097 4.097 19 C -0.111 4.111 20 C -0.103 4.103 21 C -0.089 4.089 22 C -0.107 4.107 23 C -0.121 4.121 24 C -0.059 4.059 25 Cl -0.065 7.065 26 H 0.227 0.773 27 H 0.071 0.929 28 H 0.035 0.965 29 H 0.247 0.753 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.422 0.578 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.162 0.838 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.343 -6.341 19.858 23.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 C -0.135 4.135 3 C 0.156 3.844 4 N -0.294 5.294 5 C -0.389 4.389 6 H 0.084 0.916 7 C -0.239 4.239 8 N -0.564 5.564 9 Si 0.796 3.204 10 H -0.215 1.215 11 H -0.219 1.219 12 H -0.199 1.199 13 C 0.006 3.994 14 C 0.254 3.746 15 O -0.393 6.393 16 N -0.318 5.318 17 C 0.035 3.965 18 C -0.099 4.099 19 C -0.167 4.167 20 C -0.121 4.121 21 C -0.090 4.090 22 C -0.164 4.164 23 C -0.140 4.140 24 C -0.089 4.089 25 Cl -0.035 7.035 26 H 0.244 0.756 27 H 0.089 0.911 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.261 0.739 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.179 0.821 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 10.701 -6.478 18.850 22.623 hybrid contribution -0.487 0.662 -1.105 1.377 sum 10.214 -5.816 17.745 21.284 Atomic orbital electron populations 1.25022 0.96226 1.04814 1.04531 1.24470 0.95784 0.96351 0.96857 1.17442 0.83051 0.87559 0.96299 1.43588 1.73794 1.11314 1.00689 1.19306 1.21413 0.96301 1.01847 0.91581 1.25650 0.97562 1.01064 0.99668 1.70162 1.28867 1.40507 1.16864 0.85351 0.77253 0.80062 0.77723 1.21505 1.21916 1.19909 1.20794 0.91424 1.01579 0.85638 1.22961 0.92333 0.77785 0.81509 1.90773 1.51820 1.47689 1.49042 1.43630 1.16076 1.63233 1.08841 1.17637 0.88833 0.92997 0.97010 1.20075 0.94644 0.98625 0.96602 1.20804 1.02394 0.94544 0.99006 1.21210 0.94703 0.95881 1.00350 1.20154 0.97885 0.96628 0.94372 1.20811 0.91338 1.01572 1.02663 1.20987 0.92544 1.01342 0.99113 1.21223 0.96699 0.97697 0.93243 1.98390 1.74139 1.85387 1.45611 0.75608 0.91128 0.94757 0.94283 0.89421 0.88633 0.73929 0.88816 0.89381 0.92035 0.82077 0.89640 0.91354 0.89703 0.84694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -12.80 19.25 74.32 1.43 -11.37 16 2 C -0.13 -6.58 11.60 31.12 0.36 -6.22 16 3 C 0.28 14.54 5.40 84.57 0.46 15.00 16 4 N -0.58 -29.06 1.98 -716.89 -1.42 -30.48 16 5 C -0.26 -14.37 9.69 84.03 0.81 -13.56 16 6 H 0.07 3.63 7.84 -2.91 -0.02 3.61 16 7 C -0.04 -2.47 5.16 84.86 0.44 -2.04 16 8 N -0.92 -53.78 8.98 21.65 0.19 -53.58 16 9 Si 0.97 46.33 29.56 68.60 2.03 48.36 16 10 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 11 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 12 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 13 C 0.14 5.34 6.15 85.63 0.53 5.87 16 14 C 0.47 17.78 6.67 87.66 0.59 18.36 16 15 O -0.52 -24.35 12.46 -3.05 -0.04 -24.39 16 16 N -0.67 -19.03 4.49 -303.42 -1.36 -20.39 16 17 C 0.13 3.76 6.09 38.16 0.23 3.99 16 18 C -0.10 -2.08 5.90 -19.75 -0.12 -2.19 16 19 C -0.11 -1.64 9.53 71.23 0.68 -0.96 16 20 C -0.10 -1.86 9.35 22.26 0.21 -1.65 16 21 C -0.09 -1.76 5.88 -19.85 -0.12 -1.88 16 22 C -0.11 -1.33 10.01 71.24 0.71 -0.61 16 23 C -0.12 -3.12 9.48 22.27 0.21 -2.91 16 24 C -0.06 -1.88 5.85 22.44 0.13 -1.75 16 25 Cl -0.06 -2.39 24.09 -2.72 -0.07 -2.45 16 26 H 0.23 7.96 7.80 -4.41 -0.03 7.92 16 27 H 0.07 4.14 6.28 -2.38 -0.01 4.13 16 28 H 0.03 1.68 8.12 -2.39 -0.02 1.66 16 29 H 0.25 14.33 8.31 -92.72 -0.77 13.56 16 30 H 0.09 3.08 8.07 -2.39 -0.02 3.06 16 31 H 0.10 3.40 8.04 -2.38 -0.02 3.38 16 32 H 0.42 8.72 8.21 -92.70 -0.76 7.96 16 33 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.09 1.01 8.09 -2.38 -0.02 0.99 16 35 H 0.06 1.04 7.30 -2.39 -0.02 1.03 16 36 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 37 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 0.85 8.08 -2.39 -0.02 0.83 16 39 H 0.08 0.77 8.08 -2.38 -0.02 0.75 16 40 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -73.83 355.52 6.19 -67.64 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.30 Total: 17.21 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 6.55 Total: -1.91 kcal Atomic # 7 Polarization: -101.87 SS G_CDS: -2.59 Total: -104.46 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.04 Total: -24.39 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Atomic # 17 Polarization: -2.39 SS G_CDS: -0.07 Total: -2.45 kcal Total: -73.83 6.19 -67.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281502042.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.990 kcal (2) G-P(sol) polarization free energy of solvation -73.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds