Wall clock time and date at job start Tue Mar 31 2020 13:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 N 1.46506 * 109.46817 * 65.00459 * 3 2 1 14 14 C 1.34781 * 119.99571 * 275.00130 * 13 3 2 15 15 O 1.21274 * 120.00270 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99576 * 180.02562 * 14 13 3 17 17 C 1.50701 * 109.47109 * 179.97438 * 16 14 13 18 18 C 1.34224 * 126.50035 * 265.02470 * 17 16 14 19 19 N 1.36857 * 109.92052 * 179.97438 * 18 17 16 20 20 H 0.96996 * 125.06362 * 179.97438 * 19 18 17 21 21 C 1.37712 * 109.87383 * 359.97438 * 19 18 17 22 22 C 1.39137 * 133.41744 * 179.97438 * 21 19 18 23 23 C 1.37708 * 119.94430 * 179.97438 * 22 21 19 24 24 C 1.38849 * 120.68500 * 359.97438 * 23 22 21 25 25 C 1.37726 * 120.36779 * 0.02562 * 24 23 22 26 26 Cl 1.73592 * 120.18584 * 180.02562 * 25 24 23 27 27 C 1.39746 * 119.62460 * 359.71441 * 25 24 23 28 28 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 29 29 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 31 31 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 32 32 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 33 33 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 34 34 H 0.97001 * 120.00309 * 94.99751 * 13 3 2 35 35 H 1.09005 * 109.47081 * 299.98904 * 16 14 13 36 36 H 1.08997 * 109.47516 * 59.99675 * 16 14 13 37 37 H 1.08000 * 125.04702 * 359.95327 * 18 17 16 38 38 H 1.08007 * 120.02880 * 359.97438 * 22 21 19 39 39 H 1.08006 * 119.66285 * 179.97438 * 23 22 21 40 40 H 1.07994 * 119.81699 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6642 1.3671 15 8 -0.3392 2.6326 0.4343 16 6 0.0367 3.3384 2.6547 17 6 -1.3608 3.8867 2.5231 18 6 -1.6978 5.1392 2.1778 19 7 -3.0602 5.2681 2.1624 20 1 -3.5405 6.0816 1.9425 21 6 -3.6476 4.0708 2.5058 22 6 -4.9695 3.6584 2.6416 23 6 -5.2506 2.3609 3.0075 24 6 -4.2264 1.4536 3.2437 25 6 -2.9107 1.8399 3.1153 26 17 -1.6340 0.7014 3.4111 27 6 -2.6094 3.1516 2.7393 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 5.8770 0.4827 -2.1133 34 1 2.2720 2.1230 1.9979 35 1 0.0680 2.6142 3.4688 36 1 0.7281 4.1539 2.8669 37 1 -0.9978 5.9285 1.9466 38 1 -5.7745 4.3552 2.4600 39 1 -6.2783 2.0457 3.1120 40 1 -4.4628 0.4396 3.5304 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293436773.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:47 Heat of formation + Delta-G solvation = -10.505868 kcal Electronic energy + Delta-G solvation = -24756.789202 eV Core-core repulsion = 21175.719499 eV Total energy + Delta-G solvation = -3581.069703 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.24790 -40.51783 -38.16853 -37.16483 -36.92659 -34.34298 -33.98417 -33.02477 -30.98191 -30.32424 -29.47042 -27.79110 -24.56802 -23.81126 -22.91143 -22.73203 -21.23181 -20.42537 -19.13980 -18.70619 -17.54561 -17.45985 -17.31163 -16.63809 -16.16737 -16.04668 -15.44589 -15.40246 -15.30495 -15.02653 -14.61467 -14.28889 -13.86771 -13.81294 -13.62669 -13.53574 -13.38256 -13.07095 -12.84647 -12.76087 -12.68948 -12.39037 -12.07357 -11.98119 -11.84572 -11.55157 -11.32354 -11.20045 -10.84634 -10.64197 -10.27337 -9.64046 -9.21777 -8.52204 -8.37154 -6.41308 0.03557 0.59058 1.26044 1.30039 1.33449 1.44076 1.64538 1.99412 2.24339 2.26198 2.70114 2.88683 2.98906 3.78750 3.92745 4.05097 4.12323 4.22938 4.27923 4.34004 4.39080 4.49946 4.53108 4.63589 4.69383 4.79995 4.84497 4.90768 5.00486 5.07942 5.15621 5.30555 5.42846 5.45830 5.47105 5.54169 5.64181 5.71929 5.77620 6.09964 6.19767 6.61268 6.72458 7.04018 7.23024 7.65148 8.78028 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.020490 B = 0.003941 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.191179 B = 7102.301852 C = 7557.141952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.254 3.746 4 H 0.019 0.981 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.031 3.969 8 N -0.934 5.934 9 Si 0.934 3.066 10 H -0.263 1.263 11 H -0.263 1.263 12 H -0.292 1.292 13 N -0.707 5.707 14 C 0.508 3.492 15 O -0.574 6.574 16 C -0.064 4.064 17 C -0.174 4.174 18 C 0.076 3.924 19 N -0.579 5.579 20 H 0.434 0.566 21 C 0.091 3.909 22 C -0.123 4.123 23 C -0.094 4.094 24 C -0.146 4.146 25 C -0.012 4.012 26 Cl -0.080 7.080 27 C -0.115 4.115 28 H 0.031 0.969 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.064 0.936 33 H 0.269 0.731 34 H 0.404 0.596 35 H 0.103 0.897 36 H 0.124 0.876 37 H 0.201 0.799 38 H 0.156 0.844 39 H 0.166 0.834 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.045 7.757 12.315 26.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.173 4.173 3 C 0.148 3.852 4 H 0.037 0.963 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.168 4.168 8 N -0.573 5.573 9 Si 0.762 3.238 10 H -0.189 1.189 11 H -0.188 1.188 12 H -0.219 1.219 13 N -0.357 5.357 14 C 0.296 3.704 15 O -0.454 6.454 16 C -0.104 4.104 17 C -0.181 4.181 18 C -0.051 4.051 19 N -0.183 5.183 20 H 0.275 0.725 21 C -0.017 4.017 22 C -0.144 4.144 23 C -0.113 4.113 24 C -0.166 4.166 25 C -0.039 4.039 26 Cl -0.052 7.052 27 C -0.121 4.121 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.238 0.762 35 H 0.121 0.879 36 H 0.142 0.858 37 H 0.218 0.782 38 H 0.174 0.826 39 H 0.184 0.816 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -22.358 7.728 11.531 26.317 hybrid contribution 0.618 -0.426 -0.704 1.029 sum -21.740 7.303 10.827 25.361 Atomic orbital electron populations 1.21835 0.95414 1.00118 1.02257 1.22189 0.95656 0.98941 1.00537 1.18676 0.92972 0.89278 0.84230 0.96267 1.21328 0.90445 1.38195 1.06791 0.92351 1.25498 0.95644 0.95934 0.99757 1.69973 1.10129 1.46357 1.30827 0.86076 0.79300 0.79857 0.78604 1.18921 1.18826 1.21937 1.46030 1.16158 1.56790 1.16735 1.21079 0.80941 0.78130 0.90275 1.90637 1.52001 1.60514 1.42210 1.20045 0.93819 1.01717 0.94799 1.19695 0.92278 0.93917 1.12178 1.22036 0.84254 0.98495 1.00355 1.41645 1.05574 1.11014 1.60114 0.72514 1.18366 0.93968 0.86412 1.02957 1.20485 0.92557 0.97703 1.03637 1.21102 0.99954 0.91743 0.98501 1.21098 0.89896 1.01722 1.03904 1.20584 0.89829 0.89223 1.04276 1.98353 1.52134 1.60390 1.94278 1.19024 0.94378 0.92666 1.06001 0.94954 0.93233 0.91196 0.94204 0.91770 0.92150 0.76169 0.87929 0.85787 0.78215 0.82636 0.81629 0.83917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.87 8.52 71.98 0.61 -5.26 16 2 C -0.13 -6.16 5.11 30.60 0.16 -6.01 16 3 C 0.25 12.32 1.83 44.24 0.08 12.40 16 4 H 0.02 1.06 6.63 -2.39 -0.02 1.04 16 5 C -0.53 -29.35 9.31 25.60 0.24 -29.11 16 6 H 0.06 3.41 7.98 -2.91 -0.02 3.39 16 7 C 0.03 1.80 5.45 84.65 0.46 2.26 16 8 N -0.93 -56.75 13.96 21.45 0.30 -56.45 16 9 Si 0.93 46.25 24.41 68.60 1.67 47.93 16 10 H -0.26 -12.41 6.83 99.48 0.68 -11.73 16 11 H -0.26 -13.10 6.53 99.48 0.65 -12.45 16 12 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 13 N -0.71 -28.21 5.02 -446.10 -2.24 -30.45 16 14 C 0.51 18.84 6.39 87.66 0.56 19.40 16 15 O -0.57 -25.42 13.17 -3.01 -0.04 -25.46 16 16 C -0.06 -1.74 5.61 29.10 0.16 -1.58 16 17 C -0.17 -4.69 4.81 -18.63 -0.09 -4.78 16 18 C 0.08 1.57 11.73 82.99 0.97 2.54 16 19 N -0.58 -10.18 6.07 -187.61 -1.14 -11.32 16 20 H 0.43 4.22 8.96 -92.71 -0.83 3.38 16 21 C 0.09 2.04 7.27 39.02 0.28 2.32 16 22 C -0.12 -2.12 10.07 22.36 0.23 -1.89 16 23 C -0.09 -1.58 10.01 22.29 0.22 -1.36 16 24 C -0.15 -3.22 9.81 22.29 0.22 -3.01 16 25 C -0.01 -0.33 6.35 22.51 0.14 -0.19 16 26 Cl -0.08 -2.33 26.34 -2.72 -0.07 -2.40 16 27 C -0.12 -3.24 6.21 -20.18 -0.13 -3.36 16 28 H 0.03 1.45 7.85 -2.39 -0.02 1.43 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.07 2.87 5.10 -2.39 -0.01 2.85 16 31 H 0.04 1.90 3.22 -2.38 -0.01 1.89 16 32 H 0.06 2.80 8.14 -2.38 -0.02 2.78 16 33 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 34 H 0.40 14.22 8.54 -92.71 -0.79 13.43 16 35 H 0.10 2.69 6.64 -2.38 -0.02 2.67 16 36 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.20 2.78 8.06 -2.91 -0.02 2.76 16 38 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 39 H 0.17 1.58 8.06 -2.91 -0.02 1.55 16 40 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -75.09 337.82 2.01 -73.08 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -0.60 Total: 22.71 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: 4.13 Total: -17.63 kcal Atomic # 7 Polarization: -95.14 SS G_CDS: -3.08 Total: -98.22 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.04 Total: -25.46 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.67 Total: 47.93 kcal Atomic # 17 Polarization: -2.33 SS G_CDS: -0.07 Total: -2.40 kcal Total: -75.09 2.01 -73.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293436773.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.577 kcal (2) G-P(sol) polarization free energy of solvation -75.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds