Wall clock time and date at job start Tue Mar 31 2020 13:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 H 1.08998 * 109.46991 * 305.54790 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55161 * 3 2 1 6 6 H 1.07999 * 119.99715 * 245.60397 * 5 3 2 7 7 C 1.37879 * 120.00117 * 65.60375 * 5 3 2 8 8 N 1.31512 * 119.99978 * 196.28070 * 7 5 3 9 9 Si 1.86805 * 119.99966 * 16.28830 * 7 5 3 10 10 H 1.48497 * 109.46898 * 179.97438 * 9 7 5 11 11 H 1.48499 * 109.46827 * 299.99551 * 9 7 5 12 12 H 1.48499 * 109.47283 * 59.99520 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55383 * 3 2 1 14 14 C 1.34781 * 119.99694 * 275.00048 * 13 3 2 15 15 O 1.21572 * 119.99923 * 359.97438 * 14 13 3 16 16 C 1.47716 * 119.99785 * 179.97438 * 14 13 3 17 17 C 1.40607 * 120.27339 * 359.72368 * 16 14 13 18 18 N 1.30799 * 121.52524 * 179.71430 * 17 16 14 19 19 C 1.33831 * 121.71049 * 0.59180 * 18 17 16 20 20 C 1.40670 * 120.81104 * 179.71934 * 19 18 17 21 21 F 1.35094 * 120.08833 * 359.97438 * 20 19 18 22 22 C 1.36363 * 119.82320 * 179.97438 * 20 19 18 23 23 C 1.39228 * 121.10492 * 359.96598 * 22 20 19 24 24 C 1.36406 * 120.83076 * 0.03514 * 23 22 20 25 25 F 1.35102 * 120.19613 * 180.02562 * 24 23 22 26 26 C 1.40765 * 119.60568 * 359.97438 * 24 23 22 27 27 C 1.39058 * 120.26926 * 179.97438 * 16 14 13 28 28 H 1.08996 * 109.47553 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47111 * 300.00221 * 1 2 3 30 30 H 1.09006 * 109.47148 * 60.00076 * 1 2 3 31 31 H 1.08999 * 109.47111 * 239.99779 * 2 1 3 32 32 H 1.09000 * 109.47249 * 120.00370 * 2 1 3 33 33 H 0.96993 * 120.00160 * 354.84026 * 8 7 5 34 34 H 0.96993 * 120.00114 * 95.00036 * 13 3 2 35 35 H 1.08003 * 119.23437 * 0.02562 * 17 16 14 36 36 H 1.08002 * 119.44572 * 179.97438 * 22 20 19 37 37 H 1.08000 * 119.58441 * 180.02562 * 23 22 20 38 38 H 1.08003 * 121.01597 * 359.95676 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 -0.8361 5 6 3.5407 1.4446 -0.1375 6 1 4.1567 1.8041 0.6736 7 6 4.1273 0.9878 -1.2986 8 7 5.4073 0.6860 -1.3140 9 14 3.1041 0.7977 -2.8498 10 1 3.9637 0.2944 -3.9512 11 1 2.0025 -0.1666 -2.6010 12 1 2.5328 2.1144 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4476 2.6600 1.3854 15 8 -0.3371 2.6312 0.4573 16 6 0.0682 3.3158 2.6534 17 6 0.9691 3.3474 3.7324 18 7 0.6607 3.9261 4.8642 19 6 -0.5299 4.5063 5.0561 20 6 -0.8438 5.1183 6.2831 21 9 0.0601 5.1258 7.2871 22 6 -2.0630 5.7040 6.4566 23 6 -3.0102 5.7092 5.4362 24 6 -2.7437 5.1263 4.2321 25 9 -3.6721 5.1393 3.2506 26 6 -1.4954 4.5121 4.0178 27 6 -1.1850 3.9026 2.7914 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 5.9549 0.8550 -0.5315 34 1 2.2901 2.1167 1.9977 35 1 1.9401 2.8874 3.6225 36 1 -2.2977 6.1717 7.4014 37 1 -3.9679 6.1805 5.6001 38 1 -1.8978 3.8901 1.9801 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293514387.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:30 Heat of formation + Delta-G solvation = -73.816876 kcal Electronic energy + Delta-G solvation = -26064.492208 eV Core-core repulsion = 21928.880454 eV Total energy + Delta-G solvation = -4135.611754 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.108 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.40847 -49.19828 -41.14486 -39.30541 -37.22294 -35.47605 -33.40276 -32.72046 -31.93126 -30.82051 -29.84111 -27.42332 -25.13602 -24.71387 -22.46073 -22.36271 -21.50406 -19.90663 -19.13078 -18.68130 -18.03638 -17.67968 -17.06035 -16.44794 -16.43524 -15.96192 -15.73445 -15.34918 -14.93555 -14.77790 -14.43695 -14.14518 -13.85927 -13.66895 -13.47982 -13.35338 -12.99052 -12.67541 -12.57748 -12.38882 -11.89134 -11.82981 -11.75576 -10.99608 -10.78768 -10.68383 -10.50239 -10.29031 -9.96326 -9.68659 -9.42887 -9.41172 -9.12456 -8.48562 -8.41005 -8.25491 -6.64444 -4.29388 -0.29568 0.03993 1.25569 2.10584 3.11828 3.33746 3.40437 3.40614 3.50949 3.58984 3.59532 3.72361 3.79018 4.06489 4.32416 4.35522 4.37508 4.45691 4.83387 4.88506 5.01856 5.10396 5.30191 5.38649 5.43584 5.61419 5.75388 5.91850 5.99572 6.02366 6.18842 6.23228 6.59590 6.71773 6.82905 6.94197 7.20815 7.28178 7.33813 7.52187 8.15469 8.26052 8.55374 8.76991 9.40106 10.76649 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.021698 B = 0.003228 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.106286 B = 8671.311073 C = 9533.011287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.247 3.753 4 H 0.045 0.955 5 C -0.620 4.620 6 H 0.063 0.937 7 C 0.041 3.959 8 N -0.896 5.896 9 Si 1.039 2.961 10 H -0.283 1.283 11 H -0.268 1.268 12 H -0.280 1.280 13 N -0.689 5.689 14 C 0.547 3.453 15 O -0.537 6.537 16 C -0.166 4.166 17 C 0.174 3.826 18 N -0.466 5.466 19 C 0.130 3.870 20 C 0.117 3.883 21 F -0.117 7.117 22 C -0.111 4.111 23 C -0.134 4.134 24 C 0.125 3.875 25 F -0.123 7.123 26 C -0.120 4.120 27 C 0.009 3.991 28 H 0.032 0.968 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.270 0.730 34 H 0.393 0.607 35 H 0.173 0.827 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.816 8.636 14.653 23.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C 0.144 3.856 4 H 0.063 0.937 5 C -0.658 4.658 6 H 0.081 0.919 7 C -0.167 4.167 8 N -0.528 5.528 9 Si 0.867 3.133 10 H -0.209 1.209 11 H -0.194 1.194 12 H -0.206 1.206 13 N -0.337 5.337 14 C 0.331 3.669 15 O -0.417 6.417 16 C -0.172 4.172 17 C 0.001 3.999 18 N -0.173 5.173 19 C 0.007 3.993 20 C 0.097 3.903 21 F -0.095 7.095 22 C -0.132 4.132 23 C -0.153 4.153 24 C 0.104 3.896 25 F -0.101 7.101 26 C -0.123 4.123 27 C -0.018 4.018 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.227 0.773 35 H 0.190 0.810 36 H 0.171 0.829 37 H 0.170 0.830 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -15.686 8.126 13.139 22.016 hybrid contribution -0.208 0.549 1.385 1.504 sum -15.894 8.675 14.524 23.212 Atomic orbital electron populations 1.21896 0.97374 0.99071 1.01874 1.22376 0.93801 0.99573 1.02136 1.19152 0.96079 0.88656 0.81703 0.93732 1.22072 0.89458 1.49918 1.04331 0.91907 1.25676 0.97532 0.92276 1.01166 1.70872 1.07050 1.40564 1.34350 0.84127 0.75531 0.77756 0.75907 1.20852 1.19435 1.20565 1.46250 1.13901 1.55044 1.18469 1.17835 0.83304 0.79529 0.86237 1.90772 1.50880 1.59915 1.40101 1.21387 0.95949 1.02643 0.97204 1.23322 0.98878 0.91126 0.86556 1.68050 1.16339 1.09218 1.23655 1.18712 0.90577 0.97437 0.92541 1.17059 0.88165 1.00756 0.84344 1.91554 1.66108 1.94268 1.57586 1.20668 0.91408 1.00206 1.00935 1.20638 1.01475 1.01785 0.91355 1.17265 0.85963 0.99748 0.86625 1.91559 1.63511 1.94321 1.60693 1.18582 0.94535 1.03199 0.95983 1.21882 0.95677 0.89015 0.95239 0.94898 0.93459 0.92914 0.91029 0.92894 0.92004 0.77276 0.80991 0.82859 0.83029 0.81940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.53 37.15 0.32 -2.48 16 2 C -0.14 -2.99 5.27 -26.73 -0.14 -3.13 16 3 C 0.25 5.59 1.82 -69.08 -0.13 5.47 16 4 H 0.04 1.10 6.25 -51.93 -0.32 0.77 16 5 C -0.62 -16.05 9.01 -34.44 -0.31 -16.36 16 6 H 0.06 1.69 7.96 -52.49 -0.42 1.28 16 7 C 0.04 1.10 5.32 -17.82 -0.09 1.01 16 8 N -0.90 -26.01 13.70 55.43 0.76 -25.25 16 9 Si 1.04 24.31 26.27 -169.99 -4.47 19.84 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.27 -5.83 5.67 56.52 0.32 -5.51 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.69 -12.97 4.98 -55.92 -0.28 -13.24 16 14 C 0.55 9.78 6.36 -12.39 -0.08 9.70 16 15 O -0.54 -11.05 13.52 5.30 0.07 -10.97 16 16 C -0.17 -2.42 5.89 -104.83 -0.62 -3.03 16 17 C 0.17 2.30 10.68 -17.10 -0.18 2.12 16 18 N -0.47 -6.44 10.17 -10.63 -0.11 -6.54 16 19 C 0.13 1.65 6.61 -84.73 -0.56 1.09 16 20 C 0.12 1.25 7.30 -39.34 -0.29 0.97 16 21 F -0.12 -1.37 17.11 2.25 0.04 -1.33 16 22 C -0.11 -0.82 9.91 -39.89 -0.40 -1.22 16 23 C -0.13 -0.97 9.93 -39.87 -0.40 -1.36 16 24 C 0.12 1.23 7.25 -39.29 -0.28 0.95 16 25 F -0.12 -1.28 16.68 2.25 0.04 -1.24 16 26 C -0.12 -1.44 5.74 -106.77 -0.61 -2.05 16 27 C 0.01 0.11 9.27 -38.46 -0.36 -0.24 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.90 5.63 -51.93 -0.29 0.61 16 30 H 0.05 1.06 7.88 -51.93 -0.41 0.65 16 31 H 0.07 1.60 4.74 -51.93 -0.25 1.36 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.27 7.75 8.73 -40.82 -0.36 7.39 16 34 H 0.39 6.45 6.55 -40.82 -0.27 6.18 16 35 H 0.17 1.94 6.37 -52.48 -0.33 1.61 16 36 H 0.15 0.67 8.06 -52.49 -0.42 0.24 16 37 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.16 2.11 7.41 -52.48 -0.39 1.72 16 LS Contribution 325.12 15.07 4.90 4.90 Total: -1.00 -30.56 325.12 -6.78 -37.34 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -3.61 Total: 5.09 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -4.13 Total: -8.58 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.37 Total: -45.04 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.07 Total: -10.97 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.08 Total: -2.57 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -4.47 Total: 19.84 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.56 -6.78 -37.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293514387.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.478 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds