Wall clock time and date at job start Tue Mar 31 2020 12:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38379 * 119.92461 * 2 1 4 4 C 1.38341 * 120.28997 * 180.02562 * 3 2 1 5 5 C 1.37978 * 120.14725 * 359.97438 * 4 3 2 6 6 C 1.39556 * 119.84861 * 359.97438 * 5 4 3 7 7 C 1.47845 * 120.14161 * 179.97438 * 6 5 4 8 8 N 1.31258 * 126.46277 * 194.97253 * 7 6 5 9 9 N 1.28513 * 109.95636 * 179.75077 * 8 7 6 10 10 C 1.31449 * 110.08195 * 0.45382 * 9 8 7 11 11 S 1.76199 * 126.38482 * 179.82065 * 10 9 8 12 12 C 1.81000 * 99.99871 * 359.68901 * 11 10 9 13 13 C 1.53000 * 109.47148 * 180.02562 * 12 11 10 14 14 H 1.08997 * 109.47255 * 59.99806 * 13 12 11 15 15 O 1.42904 * 109.47047 * 299.99959 * 13 12 11 16 16 C 1.50696 * 109.47436 * 180.02562 * 13 12 11 17 17 H 1.08005 * 120.00047 * 0.02562 * 16 13 12 18 18 C 1.37879 * 120.00442 * 179.97438 * 16 13 12 19 19 N 1.31511 * 119.99627 * 0.02562 * 18 16 13 20 20 Si 1.86794 * 120.00356 * 179.97438 * 18 16 13 21 21 H 1.48507 * 109.47183 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47178 * 119.99892 * 20 18 16 23 23 H 1.48495 * 109.47424 * 240.00490 * 20 18 16 24 24 N 1.36567 * 107.23016 * 359.55776 * 10 9 8 25 25 N 1.36603 * 127.16787 * 180.22112 * 24 10 9 26 26 C 1.37933 * 119.92569 * 180.26116 * 2 1 3 27 27 H 1.09007 * 109.47012 * 89.99774 * 1 2 3 28 28 H 1.09000 * 109.47003 * 209.99745 * 1 2 3 29 29 H 1.08999 * 109.47098 * 330.00210 * 1 2 3 30 30 H 1.07996 * 119.85776 * 0.02562 * 3 2 1 31 31 H 1.08006 * 119.92478 * 179.97438 * 4 3 2 32 32 H 1.08000 * 120.07382 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.47385 * 299.99958 * 12 11 10 34 34 H 1.09005 * 109.47046 * 60.00120 * 12 11 10 35 35 H 0.96699 * 114.00435 * 300.00395 * 15 13 12 36 36 H 0.96996 * 120.00149 * 179.97438 * 19 18 16 37 37 H 1.00899 * 110.99599 * 90.03250 * 25 24 10 38 38 H 1.00899 * 110.99898 * 213.98220 * 25 24 10 39 39 H 1.07994 * 120.07775 * 359.97410 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2081 -0.0005 5 6 4.2813 0.0194 -0.0005 6 6 3.5912 -1.1935 0.0005 7 6 4.3353 -2.4711 0.0000 8 7 3.8464 -3.6585 -0.2719 9 7 4.7726 -4.5450 -0.1835 10 6 5.9081 -3.9786 0.1599 11 16 7.4505 -4.7942 0.4056 12 6 6.9607 -6.5027 0.0635 13 6 8.1736 -7.4221 0.2201 14 1 8.5547 -7.3504 1.2387 15 8 9.1935 -7.0258 -0.6991 16 6 7.7659 -8.8445 -0.0653 17 1 6.7440 -9.0703 -0.3321 18 6 8.6977 -9.8578 0.0132 19 7 9.9422 -9.5829 0.3376 20 14 8.1923 -11.6210 -0.3399 21 1 6.7471 -11.6633 -0.6789 22 1 8.9837 -12.1435 -1.4827 23 1 8.4442 -12.4580 0.8606 24 7 5.6707 -2.6396 0.2849 25 7 6.5714 -1.6698 0.6232 26 6 2.1952 -1.1954 -0.0054 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6538 2.1325 0.0004 31 1 4.1136 2.1476 -0.0009 32 1 5.3613 0.0277 -0.0005 33 1 6.1831 -6.8051 0.7649 34 1 6.5791 -6.5743 -0.9550 35 1 8.9236 -7.0649 -1.6269 36 1 10.5977 -10.2957 0.3932 37 1 7.0196 -1.2906 -0.1974 38 1 6.1315 -0.9408 1.1645 39 1 1.6553 -2.1307 -0.0093 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295990962.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:40 Heat of formation + Delta-G solvation = 74.937125 kcal Electronic energy + Delta-G solvation = -23110.814593 eV Core-core repulsion = 19567.786434 eV Total energy + Delta-G solvation = -3543.028159 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.88836 -39.65060 -36.68474 -35.93447 -33.55793 -32.39679 -32.19131 -30.05628 -29.85214 -29.21733 -27.41046 -25.41054 -24.05938 -23.07011 -21.73901 -21.30244 -20.96311 -18.47806 -17.61296 -17.23378 -17.10598 -16.56020 -15.85145 -15.44115 -15.12001 -14.65352 -14.35498 -14.25467 -14.16993 -14.04314 -13.74019 -13.59593 -12.65990 -12.65018 -12.48816 -12.13844 -11.88182 -11.62854 -11.60147 -11.23856 -11.22196 -10.94013 -10.90019 -10.64847 -10.39487 -10.19814 -9.90481 -9.68080 -9.22626 -9.19418 -8.89959 -8.63970 -8.33677 -7.19801 -6.07495 -4.26626 0.43014 0.89863 1.34054 1.79319 2.14974 2.73317 2.76630 3.26339 3.34784 3.38815 3.39579 3.63627 4.20534 4.31822 4.36820 4.41960 4.64704 4.81563 4.87308 5.13060 5.19988 5.22208 5.23136 5.32982 5.35865 5.59999 5.67434 5.70570 5.86602 5.92446 6.02716 6.04540 6.13971 6.18846 6.19529 6.46227 6.69637 7.22851 7.53358 7.77401 8.02897 8.55062 8.75003 9.26616 9.49284 10.96705 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.030206 B = 0.002453 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.754434 B =11413.618281 C =12234.639515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.078 4.078 3 C -0.113 4.113 4 C -0.105 4.105 5 C -0.134 4.134 6 C 0.001 3.999 7 C 0.167 3.833 8 N -0.252 5.252 9 N -0.291 5.291 10 C 0.200 3.800 11 S 0.031 5.969 12 C -0.125 4.125 13 C 0.244 3.756 14 H 0.068 0.932 15 O -0.560 6.560 16 C -0.566 4.566 17 H 0.062 0.938 18 C 0.080 3.920 19 N -0.857 5.857 20 Si 0.895 3.105 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 N -0.309 5.309 25 N -0.583 5.583 26 C -0.078 4.078 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.349 0.651 36 H 0.262 0.738 37 H 0.365 0.635 38 H 0.374 0.626 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.189 24.196 -0.370 27.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.078 4.078 3 C -0.132 4.132 4 C -0.123 4.123 5 C -0.154 4.154 6 C -0.002 4.002 7 C -0.100 4.100 8 N -0.094 5.094 9 N -0.137 5.137 10 C -0.172 4.172 11 S 0.262 5.738 12 C -0.274 4.274 13 C 0.184 3.816 14 H 0.085 0.915 15 O -0.362 6.362 16 C -0.606 4.606 17 H 0.080 0.920 18 C -0.127 4.127 19 N -0.492 5.492 20 Si 0.722 3.278 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.208 1.208 24 N -0.092 5.092 25 N -0.218 5.218 26 C -0.098 4.098 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.133 0.867 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.193 0.807 36 H 0.072 0.928 37 H 0.184 0.816 38 H 0.195 0.805 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.154 22.987 0.565 26.008 hybrid contribution -1.307 0.262 -1.154 1.763 sum -13.462 23.249 -0.589 26.872 Atomic orbital electron populations 1.20836 0.90447 1.03223 1.02804 1.19925 0.96599 0.92567 0.98704 1.21195 0.94163 0.97775 1.00059 1.20985 0.94328 0.97505 0.99522 1.21171 0.99292 0.91988 1.02964 1.17451 0.92839 0.87300 1.02587 1.23227 0.82634 0.96457 1.07701 1.74255 1.23111 0.95820 1.16176 1.74951 0.95248 1.22642 1.20851 1.27527 1.03843 0.82191 1.03637 1.86231 0.97439 1.05145 1.84962 1.24996 1.06321 0.90403 1.05670 1.19258 0.81263 0.89499 0.91556 0.91468 1.86587 1.42373 1.89569 1.17714 1.21533 0.96567 0.91308 1.51211 0.91975 1.25038 0.94736 0.99127 0.93781 1.70084 1.01972 1.32516 1.44653 0.86515 0.78937 0.84337 0.78044 1.19517 1.20801 1.20783 1.45025 1.05575 1.05199 1.53444 1.59612 1.21964 1.15325 1.24852 1.21113 0.92004 0.98784 0.97919 0.90719 0.91020 0.91250 0.85488 0.85221 0.86710 0.88955 0.89541 0.80663 0.92831 0.81559 0.80487 0.84349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 10.01 36.01 0.36 -0.30 16 2 C -0.08 -0.62 5.87 -104.68 -0.61 -1.24 16 3 C -0.11 -0.77 9.69 -39.49 -0.38 -1.15 16 4 C -0.11 -0.71 10.03 -39.64 -0.40 -1.11 16 5 C -0.13 -1.12 8.90 -39.19 -0.35 -1.47 16 6 C 0.00 0.01 5.87 -104.97 -0.62 -0.60 16 7 C 0.17 2.49 7.76 -153.76 -1.19 1.30 16 8 N -0.25 -4.54 11.96 32.59 0.39 -4.15 16 9 N -0.29 -5.71 11.59 30.71 0.36 -5.35 16 10 C 0.20 3.59 8.20 -88.17 -0.72 2.87 16 11 S 0.03 0.57 21.90 -107.50 -2.35 -1.78 16 12 C -0.12 -2.61 4.86 37.16 0.18 -2.43 16 13 C 0.24 6.04 2.87 -27.89 -0.08 5.96 16 14 H 0.07 1.81 8.14 -51.93 -0.42 1.39 16 15 O -0.56 -13.90 12.32 -35.23 -0.43 -14.33 16 16 C -0.57 -15.23 8.76 -34.44 -0.30 -15.54 16 17 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 18 C 0.08 2.20 5.40 -17.82 -0.10 2.11 16 19 N -0.86 -24.81 12.84 55.43 0.71 -24.10 16 20 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 N -0.31 -4.51 3.83 -10.37 -0.04 -4.55 16 25 N -0.58 -6.03 9.46 60.35 0.57 -5.46 16 26 C -0.08 -0.82 9.35 -39.18 -0.37 -1.18 16 27 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 28 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 29 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 30 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 31 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 32 H 0.12 0.73 5.14 -52.49 -0.27 0.46 16 33 H 0.09 1.95 8.14 -51.92 -0.42 1.53 16 34 H 0.09 1.80 8.14 -51.91 -0.42 1.38 16 35 H 0.35 7.70 9.04 45.56 0.41 8.12 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.37 2.90 8.91 -181.36 -1.62 1.29 16 38 H 0.37 2.90 6.73 -181.36 -1.22 1.68 16 39 H 0.14 1.51 7.94 -52.49 -0.42 1.09 16 LS Contribution 350.98 15.07 5.29 5.29 Total: -1.00 -33.28 350.98 -11.14 -44.41 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -6.03 Total: 6.87 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -4.58 Total: -12.79 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 1.99 Total: -43.62 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.43 Total: -14.33 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 0.57 SS G_CDS: -2.35 Total: -1.78 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.28 -11.14 -44.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295990962.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.351 kcal (2) G-P(sol) polarization free energy of solvation -33.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds