Wall clock time and date at job start Tue Mar 31 2020 12:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38379 * 119.92461 * 2 1 4 4 C 1.38341 * 120.28997 * 180.02562 * 3 2 1 5 5 C 1.37978 * 120.14725 * 359.97438 * 4 3 2 6 6 C 1.39556 * 119.84861 * 359.97438 * 5 4 3 7 7 C 1.47845 * 120.14161 * 179.97438 * 6 5 4 8 8 N 1.31258 * 126.46277 * 194.97253 * 7 6 5 9 9 N 1.28513 * 109.95636 * 179.75077 * 8 7 6 10 10 C 1.31449 * 110.08195 * 0.45382 * 9 8 7 11 11 S 1.76199 * 126.38482 * 179.82065 * 10 9 8 12 12 C 1.81000 * 99.99871 * 359.68901 * 11 10 9 13 13 C 1.53000 * 109.47148 * 180.02562 * 12 11 10 14 14 H 1.08997 * 109.47255 * 59.99806 * 13 12 11 15 15 O 1.42904 * 109.47047 * 299.99959 * 13 12 11 16 16 C 1.50696 * 109.47436 * 180.02562 * 13 12 11 17 17 H 1.08005 * 120.00047 * 0.02562 * 16 13 12 18 18 C 1.37879 * 120.00442 * 179.97438 * 16 13 12 19 19 N 1.31511 * 119.99627 * 0.02562 * 18 16 13 20 20 Si 1.86794 * 120.00356 * 179.97438 * 18 16 13 21 21 H 1.48507 * 109.47183 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47178 * 119.99892 * 20 18 16 23 23 H 1.48495 * 109.47424 * 240.00490 * 20 18 16 24 24 N 1.36567 * 107.23016 * 359.55776 * 10 9 8 25 25 N 1.36603 * 127.16787 * 180.22112 * 24 10 9 26 26 C 1.37933 * 119.92569 * 180.26116 * 2 1 3 27 27 H 1.09007 * 109.47012 * 89.99774 * 1 2 3 28 28 H 1.09000 * 109.47003 * 209.99745 * 1 2 3 29 29 H 1.08999 * 109.47098 * 330.00210 * 1 2 3 30 30 H 1.07996 * 119.85776 * 0.02562 * 3 2 1 31 31 H 1.08006 * 119.92478 * 179.97438 * 4 3 2 32 32 H 1.08000 * 120.07382 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.47385 * 299.99958 * 12 11 10 34 34 H 1.09005 * 109.47046 * 60.00120 * 12 11 10 35 35 H 0.96699 * 114.00435 * 300.00395 * 15 13 12 36 36 H 0.96996 * 120.00149 * 179.97438 * 19 18 16 37 37 H 1.00899 * 110.99599 * 90.03250 * 25 24 10 38 38 H 1.00899 * 110.99898 * 213.98220 * 25 24 10 39 39 H 1.07994 * 120.07775 * 359.97410 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2081 -0.0005 5 6 4.2813 0.0194 -0.0005 6 6 3.5912 -1.1935 0.0005 7 6 4.3353 -2.4711 0.0000 8 7 3.8464 -3.6585 -0.2719 9 7 4.7726 -4.5450 -0.1835 10 6 5.9081 -3.9786 0.1599 11 16 7.4505 -4.7942 0.4056 12 6 6.9607 -6.5027 0.0635 13 6 8.1736 -7.4221 0.2201 14 1 8.5547 -7.3504 1.2387 15 8 9.1935 -7.0258 -0.6991 16 6 7.7659 -8.8445 -0.0653 17 1 6.7440 -9.0703 -0.3321 18 6 8.6977 -9.8578 0.0132 19 7 9.9422 -9.5829 0.3376 20 14 8.1923 -11.6210 -0.3399 21 1 6.7471 -11.6633 -0.6789 22 1 8.9837 -12.1435 -1.4827 23 1 8.4442 -12.4580 0.8606 24 7 5.6707 -2.6396 0.2849 25 7 6.5714 -1.6698 0.6232 26 6 2.1952 -1.1954 -0.0054 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6538 2.1325 0.0004 31 1 4.1136 2.1476 -0.0009 32 1 5.3613 0.0277 -0.0005 33 1 6.1831 -6.8051 0.7649 34 1 6.5791 -6.5743 -0.9550 35 1 8.9236 -7.0649 -1.6269 36 1 10.5977 -10.2957 0.3932 37 1 7.0196 -1.2906 -0.1974 38 1 6.1315 -0.9408 1.1645 39 1 1.6553 -2.1307 -0.0093 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295990962.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:40 Heat of formation + Delta-G solvation = 53.002900 kcal Electronic energy + Delta-G solvation = -23111.765733 eV Core-core repulsion = 19567.786434 eV Total energy + Delta-G solvation = -3543.979298 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.11492 -40.31222 -37.95735 -37.71332 -34.29689 -34.28003 -33.14102 -31.70445 -31.08049 -30.36358 -27.96137 -27.40227 -25.01200 -24.24758 -22.91637 -22.56632 -22.11261 -19.61453 -19.22312 -18.63760 -17.96850 -17.68830 -16.74046 -16.69467 -16.36049 -16.24541 -16.07188 -15.91744 -15.41807 -14.80688 -14.72221 -14.31735 -14.18013 -13.52491 -13.38753 -13.22408 -13.18138 -13.11007 -12.79866 -12.78636 -12.74858 -12.27738 -12.17821 -12.05247 -11.90492 -11.53622 -11.51133 -11.11307 -10.73410 -10.69543 -10.33350 -9.89439 -9.72868 -8.61601 -8.16925 -6.42923 -0.40394 -0.04028 0.27756 0.69184 1.00429 1.17735 1.41316 1.43672 1.54134 1.55806 2.40017 2.68583 2.74425 3.09608 3.33898 3.69481 3.85494 3.91300 4.05184 4.07838 4.20247 4.21672 4.26552 4.30245 4.37720 4.57676 4.65397 4.79870 4.83905 4.92717 4.95215 5.22590 5.30116 5.32780 5.49636 5.50749 5.54022 5.65975 5.87346 5.97216 6.21447 6.65842 7.27554 7.28637 7.45513 8.87847 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.030206 B = 0.002453 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.754434 B =11413.618281 C =12234.639515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.083 4.083 3 C -0.102 4.102 4 C -0.101 4.101 5 C -0.128 4.128 6 C -0.035 4.035 7 C 0.192 3.808 8 N -0.296 5.296 9 N -0.323 5.323 10 C 0.180 3.820 11 S 0.052 5.948 12 C -0.114 4.114 13 C 0.248 3.752 14 H 0.039 0.961 15 O -0.570 6.570 16 C -0.581 4.581 17 H 0.061 0.939 18 C 0.030 3.970 19 N -0.894 5.894 20 Si 0.963 3.037 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.277 1.277 24 N -0.304 5.304 25 N -0.580 5.580 26 C -0.094 4.094 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.160 0.840 31 H 0.166 0.834 32 H 0.134 0.866 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.361 0.639 36 H 0.264 0.736 37 H 0.382 0.618 38 H 0.390 0.610 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.148 27.292 -0.604 30.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.084 4.084 3 C -0.120 4.120 4 C -0.118 4.118 5 C -0.149 4.149 6 C -0.038 4.038 7 C -0.076 4.076 8 N -0.137 5.137 9 N -0.168 5.168 10 C -0.194 4.194 11 S 0.282 5.718 12 C -0.263 4.263 13 C 0.188 3.812 14 H 0.056 0.944 15 O -0.374 6.374 16 C -0.621 4.621 17 H 0.079 0.921 18 C -0.173 4.173 19 N -0.531 5.531 20 Si 0.787 3.213 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.203 1.203 24 N -0.085 5.085 25 N -0.220 5.220 26 C -0.115 4.115 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.178 0.822 31 H 0.183 0.817 32 H 0.151 0.849 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.206 0.794 36 H 0.073 0.927 37 H 0.203 0.797 38 H 0.214 0.786 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.136 26.105 0.321 29.226 hybrid contribution -1.120 -0.385 -1.067 1.594 sum -14.256 25.720 -0.746 29.416 Atomic orbital electron populations 1.20893 0.88956 1.04000 1.03455 1.20198 0.97797 0.92163 0.98201 1.21662 0.94553 0.98385 0.97436 1.21431 0.94527 0.98106 0.97781 1.21414 1.00340 0.91344 1.01782 1.17613 0.93164 0.86769 1.06243 1.23907 0.82655 0.96911 1.04155 1.74176 1.23467 0.97031 1.19044 1.74827 0.96117 1.24246 1.21655 1.27256 1.03182 0.83671 1.05326 1.85919 0.97542 1.02672 1.85678 1.24512 1.04159 0.92319 1.05334 1.18971 0.82167 0.89873 0.90147 0.94356 1.86523 1.42783 1.89545 1.18569 1.21871 0.96544 0.92796 1.50876 0.92112 1.25858 0.94654 1.03314 0.93496 1.70197 1.03063 1.33901 1.45919 0.85458 0.78649 0.79197 0.77974 1.19063 1.20213 1.20288 1.44973 1.06053 1.04986 1.52481 1.59663 1.21090 1.15304 1.25921 1.21143 0.91946 0.99342 0.99031 0.90065 0.91600 0.89178 0.82249 0.81689 0.84885 0.89774 0.89726 0.79398 0.92673 0.79683 0.78639 0.86162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 10.01 71.24 0.71 -0.37 16 2 C -0.08 -1.16 5.87 -19.90 -0.12 -1.28 16 3 C -0.10 -0.96 9.69 22.33 0.22 -0.75 16 4 C -0.10 -0.92 10.03 22.23 0.22 -0.69 16 5 C -0.13 -1.79 8.90 22.53 0.20 -1.59 16 6 C -0.04 -0.77 5.87 -20.09 -0.12 -0.89 16 7 C 0.19 5.76 7.76 136.21 1.06 6.82 16 8 N -0.30 -11.12 11.96 -50.79 -0.61 -11.73 16 9 N -0.32 -13.18 11.59 -56.75 -0.66 -13.83 16 10 C 0.18 6.57 8.20 179.49 1.47 8.04 16 11 S 0.05 1.93 21.90 -56.49 -1.24 0.70 16 12 C -0.11 -4.92 4.86 71.98 0.35 -4.57 16 13 C 0.25 12.68 2.87 29.85 0.09 12.76 16 14 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 15 O -0.57 -28.93 12.32 -148.98 -1.84 -30.77 16 16 C -0.58 -31.96 8.76 25.60 0.22 -31.74 16 17 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 18 C 0.03 1.68 5.40 84.66 0.46 2.13 16 19 N -0.89 -52.66 12.84 21.45 0.28 -52.39 16 20 Si 0.96 43.48 29.54 68.60 2.03 45.50 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 23 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 24 N -0.30 -8.74 3.83 -186.72 -0.72 -9.45 16 25 N -0.58 -10.99 9.46 37.02 0.35 -10.64 16 26 C -0.09 -1.94 9.35 22.53 0.21 -1.73 16 27 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.06 0.69 8.08 -2.39 -0.02 0.67 16 29 H 0.09 0.46 8.08 -2.39 -0.02 0.45 16 30 H 0.16 0.51 8.06 -2.91 -0.02 0.49 16 31 H 0.17 0.39 8.06 -2.91 -0.02 0.36 16 32 H 0.13 1.25 5.14 -2.91 -0.01 1.23 16 33 H 0.08 3.73 8.14 -2.40 -0.02 3.71 16 34 H 0.08 3.65 8.14 -2.39 -0.02 3.63 16 35 H 0.36 16.21 9.04 -74.06 -0.67 15.54 16 36 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 37 H 0.38 5.18 8.91 -210.56 -1.88 3.31 16 38 H 0.39 5.06 6.73 -210.56 -1.42 3.65 16 39 H 0.12 2.81 7.94 -2.91 -0.02 2.79 16 Total: -1.00 -74.47 350.98 -0.26 -74.74 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: -2.84 Total: 21.71 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 4.97 Total: -13.84 kcal Atomic # 7 Polarization: -96.68 SS G_CDS: -1.36 Total: -98.04 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -1.84 Total: -30.77 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -1.24 Total: 0.70 kcal Total: -74.47 -0.26 -74.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295990962.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.740 kcal (2) G-P(sol) polarization free energy of solvation -74.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds