Wall clock time and date at job start Tue Mar 31 2020 12:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38434 * 119.83628 * 2 1 4 4 C 1.37889 * 120.17850 * 179.97438 * 3 2 1 5 5 C 1.39633 * 119.86693 * 0.02562 * 4 3 2 6 6 C 1.47768 * 120.15467 * 180.02562 * 5 4 3 7 7 O 1.21566 * 120.00052 * 235.06139 * 6 5 4 8 8 N 1.34780 * 120.00237 * 55.06404 * 6 5 4 9 9 C 1.46492 * 120.00474 * 185.55236 * 8 6 5 10 10 C 1.50701 * 109.46836 * 90.00216 * 9 8 6 11 11 H 1.08006 * 120.00120 * 0.02562 * 10 9 8 12 12 C 1.37883 * 120.00298 * 180.02562 * 10 9 8 13 13 N 1.31510 * 119.99675 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00178 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47204 * 89.99681 * 14 12 10 16 16 H 1.48502 * 109.46715 * 209.99913 * 14 12 10 17 17 H 1.48501 * 109.47078 * 329.99626 * 14 12 10 18 18 C 1.46508 * 119.99673 * 5.55954 * 8 6 5 19 19 C 1.52998 * 109.47175 * 94.96474 * 18 8 6 20 20 C 1.47197 * 109.47005 * 180.02562 * 19 18 8 21 21 N 6.14326 * 117.85098 * 74.49739 * 2 1 3 22 22 C 1.39685 * 119.69044 * 0.02562 * 5 4 3 23 23 Cl 1.73601 * 120.09409 * 180.02562 * 22 5 4 24 24 C 1.38161 * 119.81448 * 359.74381 * 22 5 4 25 25 C 1.50700 * 119.93601 * 180.25635 * 24 22 5 26 26 H 1.09003 * 109.47385 * 90.00291 * 1 2 3 27 27 H 1.08999 * 109.47424 * 330.00260 * 1 2 3 28 28 H 1.09006 * 109.46897 * 210.00089 * 1 2 3 29 29 H 1.07994 * 119.91093 * 359.95375 * 3 2 1 30 30 H 1.07998 * 120.06673 * 180.02562 * 4 3 2 31 31 H 1.08997 * 109.47760 * 209.99867 * 9 8 6 32 32 H 1.08996 * 109.47322 * 330.00751 * 9 8 6 33 33 H 0.96994 * 119.99974 * 180.02562 * 13 12 10 34 34 H 1.08994 * 109.47069 * 214.96863 * 18 8 6 35 35 H 1.09004 * 109.46645 * 334.96617 * 18 8 6 36 36 H 1.09003 * 109.47336 * 299.99911 * 19 18 8 37 37 H 1.08999 * 109.47103 * 59.99765 * 19 18 8 38 38 H 1.09004 * 109.47287 * 270.25549 * 25 24 22 39 39 H 1.08994 * 109.47336 * 30.25713 * 25 24 22 40 40 H 1.09000 * 109.47192 * 150.25411 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2008 0.0000 4 6 3.5746 1.2091 0.0005 5 6 4.2772 0.0024 0.0005 6 6 5.7549 0.0038 0.0017 7 8 6.3639 -0.5982 -0.8612 8 7 6.4274 0.6724 0.9594 9 6 7.8872 0.7762 0.8927 10 6 8.2680 2.0107 0.1169 11 1 7.4995 2.6539 -0.2859 12 6 9.5976 2.3192 -0.0788 13 7 10.5333 1.5363 0.4120 14 14 10.0696 3.8498 -1.0399 15 1 10.1966 4.9995 -0.1086 16 1 11.3669 3.6229 -1.7260 17 1 9.0207 4.1438 -2.0491 18 6 5.6986 1.2953 2.0672 19 6 5.6738 0.3404 3.2623 20 6 4.9410 0.9660 4.3751 21 7 4.3770 1.4518 5.2340 22 6 3.5766 -1.2061 -0.0006 23 17 4.4395 -2.7125 0.0001 24 6 2.1951 -1.1992 0.0037 25 6 1.4365 -2.5014 0.0084 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3634 0.8900 0.5138 28 1 -0.3633 -0.8900 0.5139 29 1 1.6517 2.1337 -0.0008 30 1 4.1101 2.1470 0.0010 31 1 8.2933 0.8418 1.9021 32 1 8.2917 -0.1050 0.3948 33 1 11.4686 1.7534 0.2747 34 1 6.1953 2.2224 2.3531 35 1 4.6773 1.5119 1.7539 36 1 5.1770 -0.5868 2.9763 37 1 6.6951 0.1237 3.5755 38 1 1.2544 -2.8195 -1.0181 39 1 2.0222 -3.2612 0.5257 40 1 0.4843 -2.3653 0.5210 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341063243.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:20 Heat of formation + Delta-G solvation = -11.709687 kcal Electronic energy + Delta-G solvation = -24477.335146 eV Core-core repulsion = 20896.213242 eV Total energy + Delta-G solvation = -3581.121904 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.46943 -39.82033 -38.03662 -37.47962 -36.71054 -35.04277 -34.30770 -32.83572 -32.21280 -29.68144 -28.59556 -27.53447 -25.38935 -24.99000 -23.11864 -22.45376 -20.24235 -18.81309 -18.36819 -18.00956 -17.54933 -17.18668 -16.80357 -16.33485 -15.77811 -15.49302 -15.39407 -15.29543 -14.87711 -14.38317 -14.29040 -14.20962 -13.76185 -13.68091 -13.59612 -13.46667 -13.41466 -13.15255 -13.05556 -12.97839 -12.74204 -12.52362 -12.43808 -12.27272 -12.17154 -12.05631 -11.82143 -11.75239 -11.65751 -10.69691 -10.58061 -9.67949 -9.65063 -9.44513 -8.17620 -6.30304 -0.11190 0.16354 1.14272 1.40750 1.43218 1.52469 1.59407 1.77389 1.84120 2.19801 2.43459 2.56308 3.02449 3.14476 3.56851 3.72600 3.89024 4.00316 4.05507 4.12711 4.16551 4.37605 4.46844 4.57548 4.72984 4.74858 4.75830 4.86528 4.95539 4.96329 5.04859 5.14936 5.19174 5.24919 5.34059 5.35272 5.53319 5.58555 5.82672 5.86057 6.11495 6.53226 6.64325 6.78694 7.27954 7.43882 8.89489 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.012609 B = 0.004354 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.109516 B = 6429.651865 C = 6971.438454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.057 4.057 3 C -0.109 4.109 4 C -0.089 4.089 5 C -0.132 4.132 6 C 0.551 3.449 7 O -0.568 6.568 8 N -0.588 5.588 9 C 0.260 3.740 10 C -0.541 4.541 11 H 0.056 0.944 12 C 0.013 3.987 13 N -0.925 5.925 14 Si 0.959 3.041 15 H -0.266 1.266 16 H -0.285 1.285 17 H -0.273 1.273 18 C 0.107 3.893 19 C -0.038 4.038 20 C 0.245 3.755 21 N -0.478 5.478 22 C -0.013 4.013 23 Cl -0.066 7.066 24 C -0.086 4.086 25 C -0.120 4.120 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.165 0.835 30 H 0.141 0.859 31 H 0.037 0.963 32 H 0.005 0.995 33 H 0.266 0.734 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.292 -3.671 1.749 22.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.058 4.058 3 C -0.126 4.126 4 C -0.108 4.108 5 C -0.136 4.136 6 C 0.339 3.661 7 O -0.447 6.447 8 N -0.318 5.318 9 C 0.140 3.860 10 C -0.580 4.580 11 H 0.075 0.925 12 C -0.187 4.187 13 N -0.565 5.565 14 Si 0.785 3.215 15 H -0.191 1.191 16 H -0.211 1.211 17 H -0.197 1.197 18 C -0.017 4.017 19 C -0.079 4.079 20 C -0.072 4.072 21 N -0.156 5.156 22 C -0.041 4.041 23 Cl -0.037 7.037 24 C -0.087 4.087 25 C -0.176 4.176 26 H 0.106 0.894 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.182 0.818 30 H 0.159 0.841 31 H 0.055 0.945 32 H 0.024 0.976 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.122 0.878 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -22.509 -3.420 2.614 22.917 hybrid contribution 1.686 0.261 -0.924 1.941 sum -20.823 -3.159 1.690 21.129 Atomic orbital electron populations 1.21013 0.87640 1.04724 1.03934 1.20265 0.98246 0.90979 0.96271 1.21402 0.92648 0.99509 0.99066 1.21359 0.95360 0.96000 0.98081 1.19791 0.92350 0.94275 1.07178 1.18603 0.87424 0.78468 0.81583 1.90763 1.70470 1.44727 1.38757 1.47973 1.08400 1.52075 1.23320 1.18863 0.74627 0.95694 0.96857 1.21721 0.92162 1.09151 1.34925 0.92539 1.25728 0.96391 0.99924 0.96618 1.70029 1.00700 1.39176 1.46603 0.85533 0.77422 0.79684 0.78894 1.19093 1.21112 1.19740 1.21707 0.99028 0.95935 0.85065 1.19728 1.01090 0.99185 0.87915 1.28987 0.92300 0.92432 0.93503 1.81246 1.11717 1.10367 1.12272 1.20944 0.92530 0.86003 1.04599 1.98376 1.77170 1.31507 1.96617 1.19849 0.89975 0.98109 1.00742 1.21009 1.00713 0.92136 1.03768 0.89423 0.89588 0.89549 0.81756 0.84122 0.94501 0.97646 0.92546 0.89012 0.87774 0.86295 0.85999 0.89864 0.91461 0.88095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 9.60 71.24 0.68 -0.32 16 2 C -0.06 -0.93 5.88 -19.81 -0.12 -1.05 16 3 C -0.11 -1.89 9.68 22.23 0.22 -1.67 16 4 C -0.09 -2.17 7.48 22.52 0.17 -2.00 16 5 C -0.13 -4.08 4.90 -20.07 -0.10 -4.18 16 6 C 0.55 22.35 6.54 86.76 0.57 22.91 16 7 O -0.57 -28.77 15.77 -3.92 -0.06 -28.83 16 8 N -0.59 -22.84 2.46 -829.66 -2.04 -24.88 16 9 C 0.26 12.90 5.23 85.63 0.45 13.35 16 10 C -0.54 -29.28 9.39 25.60 0.24 -29.04 16 11 H 0.06 3.00 7.81 -2.91 -0.02 2.98 16 12 C 0.01 0.70 5.46 84.66 0.46 1.16 16 13 N -0.93 -53.89 13.29 21.45 0.28 -53.60 16 14 Si 0.96 43.49 29.54 68.60 2.03 45.51 16 15 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 16 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 18 C 0.11 3.00 5.19 86.38 0.45 3.45 16 19 C -0.04 -0.88 6.02 28.79 0.17 -0.70 16 20 C 0.25 6.05 15.44 89.43 1.38 7.43 16 21 N -0.48 -13.95 18.54 20.01 0.37 -13.58 16 22 C -0.01 -0.37 6.34 22.60 0.14 -0.23 16 23 Cl -0.07 -2.00 25.75 -2.72 -0.07 -2.07 16 24 C -0.09 -1.76 5.88 -19.88 -0.12 -1.88 16 25 C -0.12 -1.78 9.19 71.24 0.65 -1.12 16 26 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.09 0.53 8.08 -2.39 -0.02 0.51 16 28 H 0.09 0.56 5.92 -2.38 -0.01 0.54 16 29 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 30 H 0.14 3.31 7.58 -2.91 -0.02 3.29 16 31 H 0.04 1.80 8.07 -2.39 -0.02 1.78 16 32 H 0.01 0.32 7.35 -2.39 -0.02 0.30 16 33 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 34 H 0.09 2.62 8.11 -2.39 -0.02 2.60 16 35 H 0.10 2.49 4.42 -2.38 -0.01 2.48 16 36 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 38 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.07 1.10 6.91 -2.39 -0.02 1.09 16 40 H 0.10 0.93 5.92 -2.39 -0.01 0.92 16 Total: -1.00 -73.40 357.98 6.84 -66.56 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: 1.07 Total: 4.79 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 5.25 Total: 6.11 kcal Atomic # 7 Polarization: -90.69 SS G_CDS: -1.38 Total: -92.07 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.06 Total: -28.83 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 17 Polarization: -2.00 SS G_CDS: -0.07 Total: -2.07 kcal Total: -73.40 6.84 -66.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341063243.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.852 kcal (2) G-P(sol) polarization free energy of solvation -73.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds