Wall clock time and date at job start Tue Mar 31 2020 13:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47720 * 2 1 4 4 N 1.46502 * 109.47681 * 179.97438 * 3 2 1 5 5 C 1.36804 * 119.99857 * 263.88961 * 4 3 2 6 6 H 1.08001 * 119.99811 * 187.54831 * 5 4 3 7 7 C 1.39058 * 120.00491 * 7.55762 * 5 4 3 8 8 N 1.31363 * 119.99679 * 30.96772 * 7 5 4 9 9 Si 1.86800 * 120.00225 * 210.97524 * 7 5 4 10 10 H 1.48497 * 109.47412 * 94.99085 * 9 7 5 11 11 H 1.48499 * 109.46864 * 214.99576 * 9 7 5 12 12 H 1.48498 * 109.47018 * 334.99030 * 9 7 5 13 13 C 1.34779 * 119.99917 * 83.88932 * 4 3 2 14 14 O 1.21695 * 119.99965 * 184.86322 * 13 4 3 15 15 C 1.46904 * 119.99841 * 4.86501 * 13 4 3 16 16 N 1.38145 * 125.44076 * 257.22746 * 15 13 4 17 17 H 0.97001 * 125.60960 * 359.97438 * 16 15 13 18 18 C 1.37569 * 108.77446 * 180.02562 * 16 15 13 19 19 C 1.40870 * 107.40520 * 359.97438 * 18 16 15 20 20 C 1.40114 * 119.67378 * 180.02562 * 19 18 16 21 21 C 1.36463 * 119.85144 * 359.97438 * 20 19 18 22 22 C 1.38892 * 120.62326 * 359.97438 * 21 20 19 23 23 C 1.37836 * 120.63734 * 0.27725 * 22 21 20 24 24 Cl 1.73598 * 120.10399 * 179.74328 * 23 22 21 25 25 C 1.36010 * 125.43880 * 77.22869 * 15 13 4 26 26 C 1.50703 * 126.13494 * 359.97438 * 25 15 13 27 27 H 1.09002 * 109.46811 * 59.99748 * 1 2 3 28 28 H 1.08997 * 109.47092 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47000 * 300.00112 * 1 2 3 30 30 H 1.09005 * 109.47523 * 239.99496 * 2 1 3 31 31 H 1.09002 * 109.46811 * 120.00252 * 2 1 3 32 32 H 1.09006 * 109.47143 * 59.99737 * 3 2 1 33 33 H 1.09002 * 109.47184 * 300.00023 * 3 2 1 34 34 H 0.97002 * 119.99908 * 179.97438 * 8 7 5 35 35 H 1.08000 * 120.07227 * 179.97438 * 20 19 18 36 36 H 1.08001 * 119.68897 * 180.02562 * 21 20 19 37 37 H 1.08000 * 119.68389 * 179.97438 * 22 21 20 38 38 H 1.08998 * 109.47119 * 270.00432 * 26 25 15 39 39 H 1.09000 * 109.47006 * 30.00020 * 26 25 15 40 40 H 1.09002 * 109.47229 * 150.00037 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1886 1.5687 1.1789 6 1 5.2616 1.6912 1.1703 7 6 3.5020 1.5390 2.3878 8 7 2.4034 0.8279 2.5018 9 14 4.1416 2.5105 3.8494 10 1 3.4626 3.8301 3.9022 11 1 3.8650 1.7609 5.1012 12 1 5.6059 2.7126 3.7069 13 6 4.1795 1.3179 -1.1597 14 8 5.3932 1.2289 -1.1515 15 6 3.4495 1.2899 -2.4342 16 7 3.1858 0.1584 -3.1816 17 1 3.4523 -0.7454 -2.9512 18 6 2.4842 0.5245 -4.3068 19 6 2.3067 1.9211 -4.2568 20 6 1.6162 2.5699 -5.2890 21 6 1.1213 1.8464 -6.3349 22 6 1.2955 0.4694 -6.3878 23 6 1.9665 -0.1929 -5.3823 24 17 2.1705 -1.9151 -5.4593 25 6 2.9251 2.3738 -3.0667 26 6 2.9906 3.8008 -2.5866 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 1.9246 0.8069 3.3451 35 1 1.4761 3.6403 -5.2570 36 1 0.5899 2.3492 -7.1293 37 1 0.8972 -0.0884 -7.2224 38 1 2.1230 4.0142 -1.9622 39 1 3.9011 3.9472 -2.0055 40 1 2.9950 4.4730 -3.4446 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413204148.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:02 Heat of formation + Delta-G solvation = 15.778896 kcal Electronic energy + Delta-G solvation = -25200.320309 eV Core-core repulsion = 21620.390399 eV Total energy + Delta-G solvation = -3579.929910 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.103 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.36932 -38.59066 -36.94301 -36.15746 -35.35888 -32.92657 -32.48615 -31.47770 -29.70916 -29.33344 -26.68182 -25.91941 -24.87690 -23.02678 -22.02330 -20.88395 -20.09095 -18.79218 -17.66060 -17.05324 -16.43068 -16.23309 -15.26016 -14.69439 -14.54298 -14.30339 -14.17788 -14.07111 -13.75433 -13.39759 -12.88013 -12.85252 -12.42997 -12.27105 -12.17300 -12.06912 -11.85753 -11.52247 -11.44376 -11.21789 -11.15949 -11.08375 -10.97580 -10.83113 -10.53070 -10.43811 -10.27387 -9.74709 -9.28210 -9.01556 -8.72143 -8.05474 -7.95531 -7.35147 -6.59805 -3.91977 1.00217 1.66711 2.17104 2.73896 2.89344 3.14766 3.18941 3.24305 3.83763 3.89726 4.01815 4.66749 4.87665 4.89095 4.95988 5.21800 5.26354 5.36331 5.58688 5.66799 5.86004 5.88245 5.91803 5.96421 6.07895 6.14349 6.19467 6.30154 6.32172 6.43191 6.56675 6.63841 6.68529 6.76184 6.77074 6.98359 7.12367 7.21908 7.30642 7.58443 7.64661 7.90764 8.31515 8.97698 9.21570 9.78015 10.40713 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.017997 B = 0.004256 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.412444 B = 6577.233208 C = 6956.331086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.125 4.125 3 C 0.121 3.879 4 N -0.407 5.407 5 C -0.319 4.319 6 H 0.110 0.890 7 C 0.042 3.958 8 N -0.842 5.842 9 Si 0.916 3.084 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.476 3.524 14 O -0.583 6.583 15 C 0.104 3.896 16 N -0.560 5.560 17 H 0.421 0.579 18 C 0.099 3.901 19 C -0.082 4.082 20 C -0.064 4.064 21 C -0.143 4.143 22 C -0.098 4.098 23 C -0.040 4.040 24 Cl -0.083 7.083 25 C -0.154 4.154 26 C -0.078 4.078 27 H 0.038 0.962 28 H 0.041 0.959 29 H 0.054 0.946 30 H 0.027 0.973 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.045 0.955 34 H 0.271 0.729 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.263 1.184 -11.745 13.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.163 4.163 3 C -0.002 4.002 4 N -0.122 5.122 5 C -0.447 4.447 6 H 0.127 0.873 7 C -0.164 4.164 8 N -0.479 5.479 9 Si 0.741 3.259 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.263 3.737 14 O -0.468 6.468 15 C -0.009 4.009 16 N -0.162 5.162 17 H 0.259 0.741 18 C -0.012 4.012 19 C -0.087 4.087 20 C -0.083 4.083 21 C -0.163 4.163 22 C -0.118 4.118 23 C -0.069 4.069 24 Cl -0.054 7.054 25 C -0.161 4.161 26 C -0.135 4.135 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.121 0.879 32 H 0.114 0.886 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.735 0.804 -11.466 13.322 hybrid contribution 0.178 -0.447 0.764 0.903 sum -6.556 0.357 -10.701 12.555 Atomic orbital electron populations 1.21582 0.97030 1.00208 1.00631 1.21886 0.94315 0.97937 1.02151 1.21554 0.80225 0.97218 1.01223 1.43687 1.05557 1.58064 1.04880 1.19743 0.94503 1.48710 0.81694 0.87255 1.25250 0.96280 0.96001 0.98897 1.70134 1.18549 1.32249 1.26921 0.86082 0.79930 0.80001 0.79840 1.20120 1.20991 1.19079 1.16698 0.86785 0.88185 0.82033 1.90690 1.13078 1.56912 1.86155 1.20470 0.99904 0.85527 0.94964 1.41981 1.46963 1.09380 1.17845 0.74118 1.17863 0.99760 0.93862 0.89687 1.17977 1.03002 0.91017 0.96736 1.20412 0.95924 0.99699 0.92259 1.20442 1.03401 0.92995 0.99468 1.20649 0.99297 0.94632 0.97203 1.19854 1.06652 0.83622 0.96737 1.98349 1.96510 1.12226 1.98325 1.19303 1.05576 0.95430 0.95799 1.20137 1.02536 0.90326 1.00489 0.94331 0.93957 0.92687 0.95458 0.87869 0.88630 0.93704 0.91807 0.85635 0.85494 0.85135 0.91687 0.91385 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.91 37.16 0.37 -1.97 16 2 C -0.12 -2.53 5.75 -26.73 -0.15 -2.69 16 3 C 0.12 2.60 4.38 -4.04 -0.02 2.59 16 4 N -0.41 -9.86 2.63 -116.22 -0.31 -10.17 16 5 C -0.32 -8.33 9.37 -15.03 -0.14 -8.48 16 6 H 0.11 3.05 7.37 -52.49 -0.39 2.67 16 7 C 0.04 1.02 4.73 -17.45 -0.08 0.94 16 8 N -0.84 -20.05 8.94 55.50 0.50 -19.56 16 9 Si 0.92 19.13 29.65 -169.99 -5.04 14.09 16 10 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 11 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 12 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 13 C 0.48 11.55 6.90 -12.75 -0.09 11.46 16 14 O -0.58 -16.28 16.71 5.19 0.09 -16.19 16 15 C 0.10 2.11 5.09 -82.31 -0.42 1.69 16 16 N -0.56 -10.13 6.05 -7.34 -0.04 -10.18 16 17 H 0.42 7.20 8.96 -40.82 -0.37 6.84 16 18 C 0.10 1.64 7.05 -83.91 -0.59 1.05 16 19 C -0.08 -1.33 6.11 -106.93 -0.65 -1.98 16 20 C -0.06 -0.83 10.06 -39.52 -0.40 -1.23 16 21 C -0.14 -1.62 9.96 -39.98 -0.40 -2.02 16 22 C -0.10 -1.18 9.80 -39.49 -0.39 -1.57 16 23 C -0.04 -0.57 6.34 -39.35 -0.25 -0.82 16 24 Cl -0.08 -1.10 28.97 -51.86 -1.50 -2.60 16 25 C -0.15 -2.78 5.27 -104.16 -0.55 -3.33 16 26 C -0.08 -1.23 9.99 36.01 0.36 -0.87 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.03 0.55 7.73 -51.93 -0.40 0.14 16 31 H 0.10 2.39 6.26 -51.93 -0.32 2.06 16 32 H 0.10 2.17 5.99 -51.93 -0.31 1.86 16 33 H 0.04 0.90 6.06 -51.93 -0.31 0.59 16 34 H 0.27 6.12 8.31 -40.82 -0.34 5.78 16 35 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 38 H 0.06 0.97 8.01 -51.93 -0.42 0.56 16 39 H 0.07 1.19 7.85 -51.93 -0.41 0.79 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 348.25 15.07 5.25 5.25 Total: -1.00 -28.17 348.25 -9.48 -37.65 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -5.02 Total: 8.92 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -3.40 Total: -7.22 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.15 Total: -39.90 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: 0.09 Total: -16.19 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.04 Total: 14.09 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.50 Total: -2.60 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.17 -9.48 -37.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413204148.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.433 kcal (2) G-P(sol) polarization free energy of solvation -28.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds