Wall clock time and date at job start Tue Mar 31 2020 13:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47720 * 2 1 4 4 N 1.46502 * 109.47681 * 179.97438 * 3 2 1 5 5 C 1.36804 * 119.99857 * 263.88961 * 4 3 2 6 6 H 1.08001 * 119.99811 * 187.54831 * 5 4 3 7 7 C 1.39058 * 120.00491 * 7.55762 * 5 4 3 8 8 N 1.31363 * 119.99679 * 30.96772 * 7 5 4 9 9 Si 1.86800 * 120.00225 * 210.97524 * 7 5 4 10 10 H 1.48497 * 109.47412 * 94.99085 * 9 7 5 11 11 H 1.48499 * 109.46864 * 214.99576 * 9 7 5 12 12 H 1.48498 * 109.47018 * 334.99030 * 9 7 5 13 13 C 1.34779 * 119.99917 * 83.88932 * 4 3 2 14 14 O 1.21695 * 119.99965 * 184.86322 * 13 4 3 15 15 C 1.46904 * 119.99841 * 4.86501 * 13 4 3 16 16 N 1.38145 * 125.44076 * 257.22746 * 15 13 4 17 17 H 0.97001 * 125.60960 * 359.97438 * 16 15 13 18 18 C 1.37569 * 108.77446 * 180.02562 * 16 15 13 19 19 C 1.40870 * 107.40520 * 359.97438 * 18 16 15 20 20 C 1.40114 * 119.67378 * 180.02562 * 19 18 16 21 21 C 1.36463 * 119.85144 * 359.97438 * 20 19 18 22 22 C 1.38892 * 120.62326 * 359.97438 * 21 20 19 23 23 C 1.37836 * 120.63734 * 0.27725 * 22 21 20 24 24 Cl 1.73598 * 120.10399 * 179.74328 * 23 22 21 25 25 C 1.36010 * 125.43880 * 77.22869 * 15 13 4 26 26 C 1.50703 * 126.13494 * 359.97438 * 25 15 13 27 27 H 1.09002 * 109.46811 * 59.99748 * 1 2 3 28 28 H 1.08997 * 109.47092 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47000 * 300.00112 * 1 2 3 30 30 H 1.09005 * 109.47523 * 239.99496 * 2 1 3 31 31 H 1.09002 * 109.46811 * 120.00252 * 2 1 3 32 32 H 1.09006 * 109.47143 * 59.99737 * 3 2 1 33 33 H 1.09002 * 109.47184 * 300.00023 * 3 2 1 34 34 H 0.97002 * 119.99908 * 179.97438 * 8 7 5 35 35 H 1.08000 * 120.07227 * 179.97438 * 20 19 18 36 36 H 1.08001 * 119.68897 * 180.02562 * 21 20 19 37 37 H 1.08000 * 119.68389 * 179.97438 * 22 21 20 38 38 H 1.08998 * 109.47119 * 270.00432 * 26 25 15 39 39 H 1.09000 * 109.47006 * 30.00020 * 26 25 15 40 40 H 1.09002 * 109.47229 * 150.00037 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1886 1.5687 1.1789 6 1 5.2616 1.6912 1.1703 7 6 3.5020 1.5390 2.3878 8 7 2.4034 0.8279 2.5018 9 14 4.1416 2.5105 3.8494 10 1 3.4626 3.8301 3.9022 11 1 3.8650 1.7609 5.1012 12 1 5.6059 2.7126 3.7069 13 6 4.1795 1.3179 -1.1597 14 8 5.3932 1.2289 -1.1515 15 6 3.4495 1.2899 -2.4342 16 7 3.1858 0.1584 -3.1816 17 1 3.4523 -0.7454 -2.9512 18 6 2.4842 0.5245 -4.3068 19 6 2.3067 1.9211 -4.2568 20 6 1.6162 2.5699 -5.2890 21 6 1.1213 1.8464 -6.3349 22 6 1.2955 0.4694 -6.3878 23 6 1.9665 -0.1929 -5.3823 24 17 2.1705 -1.9151 -5.4593 25 6 2.9251 2.3738 -3.0667 26 6 2.9906 3.8008 -2.5866 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 1.9246 0.8069 3.3451 35 1 1.4761 3.6403 -5.2570 36 1 0.5899 2.3492 -7.1293 37 1 0.8972 -0.0884 -7.2224 38 1 2.1230 4.0142 -1.9622 39 1 3.9011 3.9472 -2.0055 40 1 2.9950 4.4730 -3.4446 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413204148.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:02 Heat of formation + Delta-G solvation = 1.309217 kcal Electronic energy + Delta-G solvation = -25200.947761 eV Core-core repulsion = 21620.390399 eV Total energy + Delta-G solvation = -3580.557362 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.103 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.64754 -40.30295 -38.09965 -37.32283 -37.13432 -34.35527 -34.09880 -33.26945 -30.80036 -30.55382 -28.18475 -27.50315 -26.50089 -24.44425 -23.15106 -22.50147 -21.47392 -20.25914 -19.08599 -18.81307 -17.96331 -17.51990 -16.83529 -16.27137 -15.74356 -15.71212 -15.66782 -15.40454 -15.18864 -15.01540 -14.46407 -14.16194 -13.86273 -13.77389 -13.55569 -13.31027 -13.18048 -13.14902 -12.81086 -12.63561 -12.58312 -12.25776 -12.20015 -12.16250 -12.12995 -12.07995 -11.90797 -11.45238 -10.87865 -10.66416 -10.39850 -9.84508 -9.22456 -8.59067 -8.48427 -5.90665 -0.11547 0.60769 1.12039 1.21918 1.40536 1.46441 1.55520 1.59430 2.19126 2.31075 2.83292 2.90170 3.05555 3.72739 3.80171 3.92841 4.08416 4.22729 4.30817 4.40458 4.45607 4.54251 4.59927 4.72084 4.76180 4.84831 4.93447 4.96674 5.05062 5.09468 5.10741 5.24454 5.37351 5.39230 5.47235 5.57236 5.68507 5.72030 5.81071 5.94944 6.06212 6.33085 6.42237 7.05560 7.32238 7.90653 8.50735 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.017997 B = 0.004256 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.412444 B = 6577.233208 C = 6956.331086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.117 4.117 3 C 0.131 3.869 4 N -0.411 5.411 5 C -0.365 4.365 6 H 0.076 0.924 7 C 0.022 3.978 8 N -0.844 5.844 9 Si 0.978 3.022 10 H -0.263 1.263 11 H -0.273 1.273 12 H -0.279 1.279 13 C 0.471 3.529 14 O -0.638 6.638 15 C 0.060 3.940 16 N -0.566 5.566 17 H 0.417 0.583 18 C 0.089 3.911 19 C -0.104 4.104 20 C -0.060 4.060 21 C -0.132 4.132 22 C -0.079 4.079 23 C -0.062 4.062 24 Cl -0.081 7.081 25 C -0.142 4.142 26 C -0.077 4.077 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.022 0.978 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.280 0.720 35 H 0.154 0.846 36 H 0.170 0.830 37 H 0.161 0.839 38 H 0.074 0.926 39 H 0.039 0.961 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.319 2.316 -13.811 17.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.155 4.155 3 C 0.008 3.992 4 N -0.124 5.124 5 C -0.492 4.492 6 H 0.094 0.906 7 C -0.185 4.185 8 N -0.479 5.479 9 Si 0.802 3.198 10 H -0.188 1.188 11 H -0.198 1.198 12 H -0.204 1.204 13 C 0.259 3.741 14 O -0.528 6.528 15 C -0.051 4.051 16 N -0.167 5.167 17 H 0.255 0.745 18 C -0.021 4.021 19 C -0.110 4.110 20 C -0.079 4.079 21 C -0.151 4.151 22 C -0.099 4.099 23 C -0.091 4.091 24 Cl -0.052 7.052 25 C -0.150 4.150 26 C -0.134 4.134 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.172 0.828 36 H 0.188 0.812 37 H 0.179 0.821 38 H 0.093 0.907 39 H 0.058 0.942 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.849 1.929 -13.528 16.845 hybrid contribution 1.040 -0.834 1.269 1.840 sum -8.810 1.095 -12.259 15.136 Atomic orbital electron populations 1.21487 0.94110 1.01464 1.01315 1.21746 0.96742 0.96650 1.00400 1.21536 0.78644 0.97966 1.01021 1.43835 1.06613 1.57408 1.04577 1.19577 0.93676 1.52403 0.83507 0.90606 1.25893 0.96520 0.95701 1.00415 1.70183 1.18605 1.31211 1.27904 0.85171 0.78659 0.79059 0.76945 1.18772 1.19778 1.20364 1.17230 0.86402 0.87025 0.83397 1.90615 1.15608 1.59234 1.87372 1.19855 1.03321 0.87409 0.94539 1.41859 1.47791 1.08646 1.18452 0.74541 1.18230 0.99649 0.94662 0.89543 1.18174 1.04497 0.91061 0.97221 1.20810 0.94483 1.01298 0.91263 1.20954 1.02006 0.92533 0.99593 1.21176 0.96704 0.95388 0.96621 1.20089 1.07937 0.84037 0.97078 1.98348 1.96601 1.11976 1.98305 1.19618 1.03969 0.95403 0.96001 1.20204 1.01493 0.90094 1.01639 0.92904 0.92445 0.92625 0.95883 0.90885 0.89946 0.92313 0.90936 0.82821 0.81211 0.82125 0.90728 0.94175 0.88586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 9.91 71.98 0.71 -3.44 16 2 C -0.12 -4.85 5.75 30.59 0.18 -4.67 16 3 C 0.13 5.78 4.38 86.38 0.38 6.16 16 4 N -0.41 -21.13 2.63 -639.84 -1.68 -22.81 16 5 C -0.36 -20.26 9.37 84.11 0.79 -19.47 16 6 H 0.08 4.63 7.37 -2.91 -0.02 4.61 16 7 C 0.02 1.09 4.73 84.96 0.40 1.49 16 8 N -0.84 -40.71 8.94 21.68 0.19 -40.52 16 9 Si 0.98 39.91 29.65 68.60 2.03 41.94 16 10 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 11 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 12 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 13 C 0.47 24.53 6.90 86.51 0.60 25.13 16 14 O -0.64 -38.84 16.71 -4.33 -0.07 -38.92 16 15 C 0.06 2.56 5.09 39.90 0.20 2.76 16 16 N -0.57 -21.21 6.05 -177.12 -1.07 -22.29 16 17 H 0.42 15.27 8.96 -92.71 -0.83 14.44 16 18 C 0.09 2.88 7.05 39.13 0.28 3.16 16 19 C -0.10 -3.20 6.11 -21.36 -0.13 -3.33 16 20 C -0.06 -1.30 10.06 22.31 0.22 -1.07 16 21 C -0.13 -2.25 9.96 22.01 0.22 -2.03 16 22 C -0.08 -1.56 9.80 22.33 0.22 -1.34 16 23 C -0.06 -1.65 6.34 22.42 0.14 -1.51 16 24 Cl -0.08 -2.05 28.97 -2.72 -0.08 -2.13 16 25 C -0.14 -5.12 5.27 -19.56 -0.10 -5.23 16 26 C -0.08 -2.41 9.99 71.24 0.71 -1.70 16 27 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.02 0.95 7.73 -2.38 -0.02 0.93 16 31 H 0.07 3.48 6.26 -2.39 -0.01 3.47 16 32 H 0.08 3.81 5.99 -2.38 -0.01 3.80 16 33 H 0.06 2.39 6.06 -2.39 -0.01 2.38 16 34 H 0.28 12.49 8.31 -92.71 -0.77 11.72 16 35 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 36 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 37 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 38 H 0.07 2.16 8.01 -2.39 -0.02 2.15 16 39 H 0.04 1.46 7.85 -2.39 -0.02 1.44 16 40 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -66.38 348.25 4.39 -61.99 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: 0.25 Total: 27.82 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 4.82 Total: -5.09 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -2.56 Total: -85.61 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -0.07 Total: -38.92 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Atomic # 17 Polarization: -2.05 SS G_CDS: -0.08 Total: -2.13 kcal Total: -66.38 4.39 -61.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413204148.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.299 kcal (2) G-P(sol) polarization free energy of solvation -66.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds