Wall clock time and date at job start Tue Mar 31 2020 14:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46470 * 2 1 4 4 C 1.50696 * 109.47158 * 240.00010 * 2 1 3 5 5 H 1.08003 * 119.99663 * 274.87915 * 4 2 1 6 6 C 1.37874 * 120.00111 * 94.87548 * 4 2 1 7 7 N 1.31511 * 120.00119 * 183.87845 * 6 4 2 8 8 Si 1.86801 * 119.99886 * 3.88298 * 6 4 2 9 9 H 1.48502 * 109.47439 * 84.42381 * 8 6 4 10 10 H 1.48510 * 109.47106 * 204.41987 * 8 6 4 11 11 H 1.48500 * 109.47345 * 324.42095 * 8 6 4 12 12 N 1.46894 * 109.46943 * 119.99741 * 2 1 3 13 13 C 1.46904 * 110.99982 * 176.04815 * 12 2 1 14 14 C 1.46900 * 111.00180 * 300.00113 * 12 2 1 15 15 C 1.50700 * 109.47188 * 170.00430 * 14 12 2 16 16 C 1.40988 * 126.70786 * 95.29452 * 15 14 12 17 17 C 1.36849 * 103.88399 * 180.08915 * 16 15 14 18 18 C 1.47813 * 126.92731 * 179.90444 * 17 16 15 19 19 C 1.39585 * 120.15334 * 309.74095 * 18 17 16 20 20 C 1.37932 * 119.86353 * 179.97438 * 19 18 17 21 21 C 1.38387 * 120.17701 * 359.97438 * 20 19 18 22 22 C 1.38298 * 120.31020 * 0.02562 * 21 20 19 23 23 C 1.38121 * 120.12766 * 0.02562 * 22 21 20 24 24 Cl 1.73600 * 120.09041 * 180.27555 * 23 22 21 25 25 O 1.34503 * 106.14345 * 359.64878 * 17 16 15 26 26 N 1.20889 * 111.44585 * 0.23691 * 25 17 16 27 27 H 1.08998 * 109.47563 * 186.77010 * 1 2 3 28 28 H 1.09000 * 109.47306 * 306.76850 * 1 2 3 29 29 H 1.09000 * 109.47381 * 66.76846 * 1 2 3 30 30 H 0.97006 * 119.99992 * 180.02562 * 7 6 4 31 31 H 1.08994 * 109.47339 * 183.95482 * 13 12 2 32 32 H 1.09004 * 109.46999 * 303.95552 * 13 12 2 33 33 H 1.09003 * 109.47224 * 63.95134 * 13 12 2 34 34 H 1.08993 * 109.47487 * 50.00143 * 14 12 2 35 35 H 1.08999 * 109.47006 * 289.99925 * 14 12 2 36 36 H 1.08006 * 128.05854 * 359.97438 * 16 15 14 37 37 H 1.07997 * 120.06517 * 359.97438 * 19 18 17 38 38 H 1.07997 * 119.91061 * 179.97438 * 20 19 18 39 39 H 1.08003 * 119.84798 * 180.02562 * 21 20 19 40 40 H 1.07994 * 119.93804 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1373 -1.7853 -1.2283 6 6 2.3578 0.0119 -2.3589 7 7 2.7232 -0.6130 -3.4568 8 14 2.2799 1.8780 -2.3281 9 1 3.5484 2.4174 -1.7755 10 1 2.0852 2.3882 -3.7091 11 1 1.1443 2.3121 -1.4753 12 7 2.0196 -0.6924 1.1994 13 6 3.4851 -0.7944 1.1871 14 6 1.5486 -0.0263 2.4210 15 6 1.8579 -0.8910 3.6159 16 6 2.9867 -0.7959 4.4553 17 6 2.7978 -1.7927 5.3738 18 6 3.6909 -2.1460 6.4973 19 6 5.0548 -2.3417 6.2740 20 6 5.8829 -2.6707 7.3268 21 6 5.3651 -2.8065 8.6030 22 6 4.0150 -2.6142 8.8325 23 6 3.1740 -2.2854 7.7873 24 17 1.4806 -2.0372 8.0777 25 8 1.6327 -2.3824 5.0514 26 7 1.1317 -1.8687 4.0785 27 1 -0.3634 -1.0204 0.1211 28 1 -0.3634 0.6151 0.8232 29 1 -0.3634 0.4054 -0.9443 30 1 2.9525 -0.1048 -4.2507 31 1 3.8164 -1.3720 2.0500 32 1 3.8070 -1.2914 0.2719 33 1 3.9192 0.2045 1.2300 34 1 0.4722 0.1325 2.3564 35 1 2.0518 0.9346 2.5280 36 1 3.8098 -0.0998 4.3880 37 1 5.4608 -2.2358 5.2788 38 1 6.9382 -2.8227 7.1548 39 1 6.0185 -3.0638 9.4236 40 1 3.6174 -2.7213 9.8308 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419209330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:22 Heat of formation + Delta-G solvation = 71.465638 kcal Electronic energy + Delta-G solvation = -23853.938958 eV Core-core repulsion = 20276.423807 eV Total energy + Delta-G solvation = -3577.515151 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.103 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.90294 -40.22193 -39.09123 -37.48481 -35.58655 -34.46796 -34.04163 -31.86384 -31.77035 -30.56151 -29.19880 -26.82032 -25.42932 -24.76513 -23.89874 -23.33259 -21.63198 -20.73403 -19.24171 -18.80986 -18.61430 -17.63822 -17.05686 -16.51432 -16.34398 -16.09294 -15.69235 -15.43292 -14.93048 -14.81582 -14.71318 -14.54442 -14.45160 -14.15527 -13.58996 -13.22638 -12.95301 -12.91381 -12.71703 -12.61551 -12.56769 -12.48075 -12.23447 -12.20158 -11.93731 -11.86262 -11.81856 -11.30218 -11.00899 -10.84733 -10.76069 -9.89539 -9.59986 -9.05176 -8.29237 -6.33183 -0.30778 0.19035 0.65350 1.06803 1.20304 1.32186 1.34878 1.45054 2.05706 2.32448 2.63116 2.97976 3.14977 3.29989 3.46966 3.75650 3.95071 4.09704 4.16230 4.28298 4.32146 4.35968 4.39400 4.48111 4.53548 4.58279 4.65506 4.77903 4.82132 4.87870 4.89062 5.00660 5.07344 5.16432 5.23679 5.29572 5.40941 5.44027 5.64866 5.76717 6.03970 6.31172 6.62227 6.75075 7.29858 7.32601 8.87742 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.024417 B = 0.002872 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.460750 B = 9745.496384 C =10414.901753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.184 3.816 3 H 0.008 0.992 4 C -0.500 4.500 5 H 0.030 0.970 6 C 0.016 3.984 7 N -0.946 5.946 8 Si 0.937 3.063 9 H -0.265 1.265 10 H -0.287 1.287 11 H -0.245 1.245 12 N -0.544 5.544 13 C 0.046 3.954 14 C 0.123 3.877 15 C 0.027 3.973 16 C -0.199 4.199 17 C -0.002 4.002 18 C -0.036 4.036 19 C -0.082 4.082 20 C -0.108 4.108 21 C -0.084 4.084 22 C -0.114 4.114 23 C -0.030 4.030 24 Cl -0.073 7.073 25 O 0.107 5.893 26 N -0.377 5.377 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.045 0.955 30 H 0.267 0.733 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.025 0.975 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.196 0.804 37 H 0.146 0.854 38 H 0.167 0.833 39 H 0.171 0.829 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.791 0.225 29.148 30.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.077 3.923 3 H 0.026 0.974 4 C -0.539 4.539 5 H 0.049 0.951 6 C -0.182 4.182 7 N -0.586 5.586 8 Si 0.761 3.239 9 H -0.190 1.190 10 H -0.213 1.213 11 H -0.169 1.169 12 N -0.270 5.270 13 C -0.102 4.102 14 C -0.005 4.005 15 C -0.131 4.131 16 C -0.221 4.221 17 C -0.065 4.065 18 C -0.038 4.038 19 C -0.101 4.101 20 C -0.126 4.126 21 C -0.102 4.102 22 C -0.132 4.132 23 C -0.057 4.057 24 Cl -0.044 7.044 25 O 0.038 5.962 26 N -0.079 5.079 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.213 0.787 37 H 0.164 0.836 38 H 0.184 0.816 39 H 0.189 0.811 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.292 -0.727 28.578 29.271 hybrid contribution 0.496 1.673 -0.809 1.923 sum 6.788 0.946 27.769 28.602 Atomic orbital electron populations 1.21916 0.96486 1.00583 0.99945 1.19608 0.93249 0.91758 0.87651 0.97431 1.20959 1.42900 0.93878 0.96116 0.95134 1.25829 0.94273 1.03347 0.94723 1.70045 1.47735 1.37926 1.02928 0.85888 0.80121 0.80207 0.77680 1.19030 1.21279 1.16879 1.61962 1.11124 1.52797 1.01098 1.22109 0.87134 0.99535 1.01431 1.20468 1.01988 0.92916 0.85146 1.23447 0.93574 0.96667 0.99386 1.22837 1.01444 1.02297 0.95480 1.22670 0.89240 0.96022 0.98598 1.17634 0.92597 1.05892 0.87712 1.21467 0.89965 0.96952 1.01673 1.21602 1.01643 0.97573 0.91800 1.21745 0.94088 0.95900 0.98447 1.21344 0.93751 0.99527 0.98587 1.21308 0.85815 1.04099 0.94516 1.98402 1.14715 1.95066 1.96170 1.84978 1.29430 1.47569 1.34264 1.73804 1.22254 1.11625 1.00231 0.93835 0.92735 0.93570 0.92441 0.91665 0.92955 0.95613 0.89301 0.91336 0.78681 0.83590 0.81579 0.81121 0.82560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.62 8.76 71.98 0.63 -4.99 16 2 C 0.18 8.61 1.70 44.17 0.08 8.69 16 3 H 0.01 0.37 5.36 -2.38 -0.01 0.36 16 4 C -0.50 -28.46 7.39 25.60 0.19 -28.28 16 5 H 0.03 2.00 8.05 -2.91 -0.02 1.97 16 6 C 0.02 0.92 5.47 84.65 0.46 1.38 16 7 N -0.95 -58.70 13.96 21.45 0.30 -58.40 16 8 Si 0.94 43.16 26.95 68.60 1.85 45.01 16 9 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 10 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 11 H -0.25 -10.42 6.88 99.48 0.68 -9.74 16 12 N -0.54 -22.99 4.61 -906.05 -4.18 -27.17 16 13 C 0.05 1.81 9.08 127.69 1.16 2.97 16 14 C 0.12 4.25 5.36 85.56 0.46 4.71 16 15 C 0.03 0.89 5.98 43.46 0.26 1.15 16 16 C -0.20 -5.21 10.12 22.62 0.23 -4.98 16 17 C 0.00 -0.04 6.16 24.48 0.15 0.11 16 18 C -0.04 -0.73 5.82 -20.07 -0.12 -0.85 16 19 C -0.08 -1.18 9.73 22.52 0.22 -0.96 16 20 C -0.11 -0.94 10.03 22.23 0.22 -0.72 16 21 C -0.08 -0.62 10.04 22.32 0.22 -0.40 16 22 C -0.11 -1.34 9.82 22.26 0.22 -1.12 16 23 C -0.03 -0.56 6.35 22.59 0.14 -0.42 16 24 Cl -0.07 -1.56 27.50 -2.72 -0.07 -1.64 16 25 O 0.11 3.45 10.54 67.20 0.71 4.16 16 26 N -0.38 -13.63 12.05 -48.84 -0.59 -14.22 16 27 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.05 1.96 6.57 -2.39 -0.02 1.94 16 29 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.27 15.46 8.31 -92.70 -0.77 14.68 16 31 H 0.06 2.24 6.59 -2.39 -0.02 2.23 16 32 H 0.05 2.42 6.82 -2.38 -0.02 2.40 16 33 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.09 3.08 5.97 -2.39 -0.01 3.06 16 35 H 0.07 2.07 8.12 -2.39 -0.02 2.05 16 36 H 0.20 3.88 8.06 -2.91 -0.02 3.85 16 37 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 38 H 0.17 0.46 8.06 -2.91 -0.02 0.44 16 39 H 0.17 0.10 8.06 -2.91 -0.02 0.08 16 40 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -71.74 349.00 3.57 -68.16 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 1.03 Total: 7.79 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 4.53 Total: -23.70 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -4.47 Total: -99.79 kcal Atomic # 8 Polarization: 3.45 SS G_CDS: 0.71 Total: 4.16 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.85 Total: 45.01 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.07 Total: -1.64 kcal Total: -71.74 3.57 -68.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419209330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.628 kcal (2) G-P(sol) polarization free energy of solvation -71.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds