Wall clock time and date at job start Tue Mar 31 2020 12:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33394 * 122.53419 * 2 1 4 4 S 1.75891 * 109.58653 * 180.23738 * 3 2 1 5 5 C 1.75878 * 90.97069 * 359.73357 * 4 3 2 6 6 C 1.33384 * 109.59742 * 359.97438 * 5 4 3 7 7 C 1.50697 * 122.53920 * 180.02562 * 6 5 4 8 8 N 1.46501 * 109.46970 * 260.02534 * 7 6 5 9 9 C 1.34779 * 120.00032 * 179.97438 * 8 7 6 10 10 O 1.21840 * 120.00106 * 0.02562 * 9 8 7 11 11 N 1.33828 * 120.00127 * 179.97438 * 9 8 7 12 12 C 1.32938 * 120.00285 * 180.02562 * 11 9 8 13 13 C 1.41205 * 126.37378 * 0.02562 * 12 11 9 14 14 C 1.34954 * 108.24138 * 179.97438 * 13 12 11 15 15 N 1.36456 * 108.95218 * 0.02562 * 14 13 12 16 16 C 1.46495 * 125.85647 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47426 * 85.02217 * 16 15 14 18 18 H 1.08001 * 119.99569 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00060 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99918 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00042 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46928 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46952 * 120.00219 * 21 19 17 24 24 H 1.48491 * 109.47110 * 240.00220 * 21 19 17 25 25 N 1.37424 * 126.37995 * 180.02562 * 12 11 9 26 26 H 0.96995 * 126.36196 * 0.02562 * 25 12 11 27 27 H 1.08992 * 109.47371 * 270.25118 * 1 2 3 28 28 H 1.09003 * 109.46924 * 30.26088 * 1 2 3 29 29 H 1.09007 * 109.46320 * 150.25336 * 1 2 3 30 30 H 1.07999 * 125.20972 * 359.96964 * 3 2 1 31 31 H 1.08003 * 125.19784 * 179.97438 * 5 4 3 32 32 H 1.09004 * 109.47339 * 140.02961 * 7 6 5 33 33 H 1.09001 * 109.47714 * 20.02545 * 7 6 5 34 34 H 0.96995 * 119.99995 * 0.02562 * 8 7 6 35 35 H 1.08002 * 125.88050 * 359.96219 * 13 12 11 36 36 H 1.08005 * 125.52759 * 179.74253 * 14 13 12 37 37 H 1.08997 * 109.46982 * 205.02314 * 16 15 14 38 38 H 1.09004 * 109.47194 * 325.01875 * 16 15 14 39 39 H 0.97007 * 120.00218 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2244 1.1246 0.0000 4 16 3.9386 0.7305 -0.0069 5 6 3.5737 -0.9900 -0.0012 6 6 2.2516 -1.1669 0.0057 7 6 1.6167 -2.5335 0.0125 8 7 1.1873 -2.8792 -1.3449 9 6 0.5896 -4.0638 -1.5815 10 8 0.4060 -4.8471 -0.6665 11 7 0.1969 -4.3794 -2.8213 12 6 -0.3931 -5.5476 -3.0547 13 6 -0.6713 -6.5506 -2.1005 14 6 -1.2755 -7.5787 -2.7323 15 7 -1.3961 -7.2754 -4.0572 16 6 -1.9975 -8.1319 -5.0823 17 6 -3.4900 -7.9234 -5.0989 18 1 -3.9449 -7.2226 -4.4145 19 6 -4.2744 -8.6265 -5.9884 20 7 -3.7203 -9.4794 -6.8221 21 14 -6.1245 -8.3686 -6.0085 22 1 -6.4953 -7.3637 -4.9799 23 1 -6.5419 -7.8823 -7.3481 24 1 -6.8066 -9.6542 -5.7139 25 7 -0.8458 -6.0039 -4.2693 26 1 -0.7939 -5.5336 -5.1160 27 1 -0.3634 0.0045 1.0276 28 1 -0.3633 0.8877 -0.5179 29 1 -0.3632 -0.8924 -0.5100 30 1 1.8154 2.1241 -0.0005 31 1 4.3078 -1.7821 -0.0031 32 1 0.7526 -2.5295 0.6769 33 1 2.3409 -3.2690 0.3628 34 1 1.3339 -2.2558 -2.0734 35 1 -0.4401 -6.5032 -1.0466 36 1 -1.6056 -8.4952 -2.2658 37 1 -1.5841 -7.8760 -6.0578 38 1 -1.7790 -9.1758 -4.8576 39 1 -4.2723 -9.9744 -7.4477 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488542454.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:37 Heat of formation + Delta-G solvation = 103.191782 kcal Electronic energy + Delta-G solvation = -22971.217751 eV Core-core repulsion = 19429.414806 eV Total energy + Delta-G solvation = -3541.802945 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.74729 -39.42326 -38.28994 -34.54581 -33.76759 -32.87432 -31.29846 -31.00416 -30.55694 -28.41706 -26.73868 -25.60764 -23.22531 -22.43930 -21.53700 -21.16849 -19.73267 -18.41301 -17.84150 -17.25267 -16.87376 -16.11039 -15.68461 -15.22710 -14.93884 -14.79521 -14.35660 -14.19253 -14.04837 -13.68091 -13.33891 -13.17043 -13.09344 -12.71208 -12.57355 -12.39998 -12.16310 -11.95261 -11.89477 -11.66548 -11.32154 -11.07870 -10.95467 -10.53078 -10.36574 -9.73177 -9.54167 -9.00044 -8.95150 -8.91706 -8.57885 -8.51721 -8.30104 -6.86684 -6.47120 -4.64393 0.78191 1.45757 1.77002 1.81985 2.09886 2.38062 3.05046 3.14455 3.17814 3.20983 3.85363 4.07775 4.52849 4.63310 4.72626 4.73298 4.82480 5.09987 5.23402 5.29946 5.34568 5.45612 5.52885 5.68361 5.81978 5.85454 6.00274 6.03331 6.25851 6.29664 6.37412 6.55321 6.58062 6.75335 7.08809 7.38767 7.42221 7.52915 7.66000 7.89219 8.32525 8.45541 8.49674 9.06203 9.65044 10.53510 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.028588 B = 0.002068 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.207591 B =13537.112527 C =13923.705778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.085 4.085 3 C -0.221 4.221 4 S 0.088 5.912 5 C -0.189 4.189 6 C -0.114 4.114 7 C 0.201 3.799 8 N -0.726 5.726 9 C 0.685 3.315 10 O -0.633 6.633 11 N -0.713 5.713 12 C 0.487 3.513 13 C -0.334 4.334 14 C 0.161 3.839 15 N -0.346 5.346 16 C 0.255 3.745 17 C -0.556 4.556 18 H 0.070 0.930 19 C 0.069 3.931 20 N -0.887 5.887 21 Si 0.909 3.091 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.278 1.278 25 N -0.472 5.472 26 H 0.444 0.556 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.163 0.837 31 H 0.167 0.833 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.397 0.603 35 H 0.183 0.817 36 H 0.186 0.814 37 H 0.051 0.949 38 H 0.068 0.932 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.649 14.423 10.097 20.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.097 4.097 3 C -0.356 4.356 4 S 0.353 5.647 5 C -0.326 4.326 6 C -0.127 4.127 7 C 0.074 3.926 8 N -0.381 5.381 9 C 0.384 3.616 10 O -0.515 6.515 11 N -0.478 5.478 12 C 0.233 3.767 13 C -0.367 4.367 14 C 0.016 3.984 15 N -0.132 5.132 16 C 0.138 3.862 17 C -0.595 4.595 18 H 0.088 0.912 19 C -0.136 4.136 20 N -0.524 5.524 21 Si 0.736 3.264 22 H -0.194 1.194 23 H -0.205 1.205 24 H -0.204 1.204 25 N -0.195 5.195 26 H 0.291 0.709 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.181 0.819 31 H 0.184 0.816 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.231 0.769 35 H 0.200 0.800 36 H 0.203 0.797 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.907 15.082 9.695 21.523 hybrid contribution -2.228 -0.586 -0.425 2.343 sum 9.679 14.497 9.271 19.743 Atomic orbital electron populations 1.20599 0.89476 1.03386 1.02500 1.18862 0.97679 0.91369 1.01788 1.25390 0.95606 1.02273 1.12378 1.84222 1.06636 1.00514 1.73285 1.25572 0.99165 0.99128 1.08691 1.18947 0.92700 0.96067 1.04971 1.19572 0.98364 0.89861 0.84818 1.44690 1.65001 1.19182 1.09190 1.16598 0.78280 0.81489 0.85183 1.90731 1.61906 1.50121 1.48753 1.68042 1.37192 1.19037 1.23509 1.18704 0.85352 0.89560 0.83077 1.22390 1.15996 0.95419 1.02852 1.22801 0.93660 0.99855 0.82056 1.47965 1.50659 1.05206 1.09398 1.20033 0.93422 0.87956 0.84746 1.21464 0.90464 1.26262 1.21268 0.91168 1.24961 1.00001 0.94233 0.94402 1.69907 1.36640 1.25106 1.20720 0.86245 0.83375 0.78478 0.78336 1.19388 1.20548 1.20412 1.44439 1.55504 1.09463 1.10051 0.70922 0.91117 0.91573 0.90525 0.81948 0.81593 0.91116 0.91459 0.76916 0.79997 0.79674 0.93131 0.91439 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 9.61 36.01 0.35 -0.61 16 2 C -0.08 -0.87 5.80 -106.25 -0.62 -1.48 16 3 C -0.22 -1.99 10.98 29.04 0.32 -1.67 16 4 S 0.09 0.76 23.34 -107.50 -2.51 -1.75 16 5 C -0.19 -1.85 10.95 29.04 0.32 -1.53 16 6 C -0.11 -1.25 5.17 -106.25 -0.55 -1.80 16 7 C 0.20 2.63 5.11 -5.19 -0.03 2.60 16 8 N -0.73 -11.15 5.27 -66.61 -0.35 -11.50 16 9 C 0.69 13.38 8.47 -87.76 -0.74 12.64 16 10 O -0.63 -13.69 13.26 5.06 0.07 -13.62 16 11 N -0.71 -14.15 10.59 -15.79 -0.17 -14.32 16 12 C 0.49 9.52 8.07 -155.28 -1.25 8.27 16 13 C -0.33 -6.28 9.52 -39.62 -0.38 -6.66 16 14 C 0.16 2.74 11.45 -16.66 -0.19 2.55 16 15 N -0.35 -6.46 3.63 -62.24 -0.23 -6.69 16 16 C 0.25 5.32 6.19 -5.19 -0.03 5.29 16 17 C -0.56 -13.25 9.39 -34.44 -0.32 -13.57 16 18 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 19 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -22.55 13.29 55.43 0.74 -21.81 16 21 Si 0.91 19.29 29.54 -169.99 -5.02 14.27 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 25 N -0.47 -8.49 7.38 31.33 0.23 -8.26 16 26 H 0.44 7.06 8.96 -182.56 -1.64 5.42 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 29 H 0.08 0.86 7.11 -51.92 -0.37 0.49 16 30 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.17 1.39 8.06 -52.48 -0.42 0.97 16 32 H 0.07 0.96 7.71 -51.93 -0.40 0.56 16 33 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 34 H 0.40 5.67 8.56 -40.82 -0.35 5.32 16 35 H 0.18 3.61 5.77 -52.49 -0.30 3.31 16 36 H 0.19 2.49 8.06 -52.48 -0.42 2.07 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 39 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 LS Contribution 352.82 15.07 5.32 5.32 Total: -1.00 -29.14 352.82 -11.13 -40.28 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -5.98 Total: 12.47 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -3.23 Total: 5.61 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: 0.22 Total: -62.58 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.07 Total: -13.62 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.51 Total: -1.75 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.14 -11.13 -40.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488542454.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.467 kcal (2) G-P(sol) polarization free energy of solvation -29.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds