Wall clock time and date at job start Tue Mar 31 2020 12:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33394 * 122.53419 * 2 1 4 4 S 1.75891 * 109.58653 * 180.23738 * 3 2 1 5 5 C 1.75878 * 90.97069 * 359.73357 * 4 3 2 6 6 C 1.33384 * 109.59742 * 359.97438 * 5 4 3 7 7 C 1.50697 * 122.53920 * 180.02562 * 6 5 4 8 8 N 1.46501 * 109.46970 * 260.02534 * 7 6 5 9 9 C 1.34779 * 120.00032 * 179.97438 * 8 7 6 10 10 O 1.21840 * 120.00106 * 0.02562 * 9 8 7 11 11 N 1.33828 * 120.00127 * 179.97438 * 9 8 7 12 12 C 1.32938 * 120.00285 * 180.02562 * 11 9 8 13 13 C 1.41205 * 126.37378 * 0.02562 * 12 11 9 14 14 C 1.34954 * 108.24138 * 179.97438 * 13 12 11 15 15 N 1.36456 * 108.95218 * 0.02562 * 14 13 12 16 16 C 1.46495 * 125.85647 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47426 * 85.02217 * 16 15 14 18 18 H 1.08001 * 119.99569 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00060 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99918 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00042 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46928 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46952 * 120.00219 * 21 19 17 24 24 H 1.48491 * 109.47110 * 240.00220 * 21 19 17 25 25 N 1.37424 * 126.37995 * 180.02562 * 12 11 9 26 26 H 0.96995 * 126.36196 * 0.02562 * 25 12 11 27 27 H 1.08992 * 109.47371 * 270.25118 * 1 2 3 28 28 H 1.09003 * 109.46924 * 30.26088 * 1 2 3 29 29 H 1.09007 * 109.46320 * 150.25336 * 1 2 3 30 30 H 1.07999 * 125.20972 * 359.96964 * 3 2 1 31 31 H 1.08003 * 125.19784 * 179.97438 * 5 4 3 32 32 H 1.09004 * 109.47339 * 140.02961 * 7 6 5 33 33 H 1.09001 * 109.47714 * 20.02545 * 7 6 5 34 34 H 0.96995 * 119.99995 * 0.02562 * 8 7 6 35 35 H 1.08002 * 125.88050 * 359.96219 * 13 12 11 36 36 H 1.08005 * 125.52759 * 179.74253 * 14 13 12 37 37 H 1.08997 * 109.46982 * 205.02314 * 16 15 14 38 38 H 1.09004 * 109.47194 * 325.01875 * 16 15 14 39 39 H 0.97007 * 120.00218 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2244 1.1246 0.0000 4 16 3.9386 0.7305 -0.0069 5 6 3.5737 -0.9900 -0.0012 6 6 2.2516 -1.1669 0.0057 7 6 1.6167 -2.5335 0.0125 8 7 1.1873 -2.8792 -1.3449 9 6 0.5896 -4.0638 -1.5815 10 8 0.4060 -4.8471 -0.6665 11 7 0.1969 -4.3794 -2.8213 12 6 -0.3931 -5.5476 -3.0547 13 6 -0.6713 -6.5506 -2.1005 14 6 -1.2755 -7.5787 -2.7323 15 7 -1.3961 -7.2754 -4.0572 16 6 -1.9975 -8.1319 -5.0823 17 6 -3.4900 -7.9234 -5.0989 18 1 -3.9449 -7.2226 -4.4145 19 6 -4.2744 -8.6265 -5.9884 20 7 -3.7203 -9.4794 -6.8221 21 14 -6.1245 -8.3686 -6.0085 22 1 -6.4953 -7.3637 -4.9799 23 1 -6.5419 -7.8823 -7.3481 24 1 -6.8066 -9.6542 -5.7139 25 7 -0.8458 -6.0039 -4.2693 26 1 -0.7939 -5.5336 -5.1160 27 1 -0.3634 0.0045 1.0276 28 1 -0.3633 0.8877 -0.5179 29 1 -0.3632 -0.8924 -0.5100 30 1 1.8154 2.1241 -0.0005 31 1 4.3078 -1.7821 -0.0031 32 1 0.7526 -2.5295 0.6769 33 1 2.3409 -3.2690 0.3628 34 1 1.3339 -2.2558 -2.0734 35 1 -0.4401 -6.5032 -1.0466 36 1 -1.6056 -8.4952 -2.2658 37 1 -1.5841 -7.8760 -6.0578 38 1 -1.7790 -9.1758 -4.8576 39 1 -4.2723 -9.9744 -7.4477 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488542454.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:36 Heat of formation + Delta-G solvation = 85.468206 kcal Electronic energy + Delta-G solvation = -22971.986303 eV Core-core repulsion = 19429.414806 eV Total energy + Delta-G solvation = -3542.571497 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.22936 -40.56475 -39.43679 -36.06572 -35.20345 -34.51313 -32.47285 -32.38495 -31.89837 -29.40688 -28.27884 -26.65229 -24.86203 -23.42007 -22.86771 -22.59291 -21.16431 -19.45051 -18.86285 -18.59725 -18.37715 -17.50470 -17.09925 -16.59397 -16.46457 -15.99041 -15.78706 -15.46930 -15.26306 -14.68626 -14.53062 -14.43553 -14.25964 -14.08468 -13.88920 -13.63738 -13.40065 -13.08157 -12.91154 -12.77564 -12.74441 -12.48389 -12.32021 -12.02654 -11.69815 -11.24511 -11.18510 -10.76450 -10.47456 -9.93139 -9.89515 -9.66579 -9.21698 -8.52838 -8.18033 -6.54219 0.02862 0.34841 0.63521 0.74127 1.03858 1.37896 1.43264 1.52186 1.53721 1.71503 2.31677 2.56611 2.95308 3.11542 3.18174 3.86673 3.94751 3.95938 4.27868 4.34552 4.44753 4.49682 4.56918 4.62256 4.71449 4.80291 4.84274 4.88855 5.01545 5.06179 5.17939 5.28953 5.50859 5.53389 5.58625 5.72693 5.76122 5.98872 6.16854 6.38456 6.62305 6.93373 7.03764 7.19628 8.15987 8.67937 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.028588 B = 0.002068 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.207591 B =13537.112527 C =13923.705778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.103 4.103 3 C -0.220 4.220 4 S 0.124 5.876 5 C -0.196 4.196 6 C -0.127 4.127 7 C 0.206 3.794 8 N -0.712 5.712 9 C 0.674 3.326 10 O -0.660 6.660 11 N -0.722 5.722 12 C 0.472 3.528 13 C -0.346 4.346 14 C 0.177 3.823 15 N -0.351 5.351 16 C 0.268 3.732 17 C -0.563 4.563 18 H 0.059 0.941 19 C 0.029 3.971 20 N -0.913 5.913 21 Si 0.964 3.036 22 H -0.273 1.273 23 H -0.279 1.279 24 H -0.274 1.274 25 N -0.467 5.467 26 H 0.451 0.549 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.053 0.947 30 H 0.185 0.815 31 H 0.177 0.823 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.403 0.597 35 H 0.173 0.827 36 H 0.223 0.777 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.803 15.448 10.366 21.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C -0.355 4.355 4 S 0.389 5.611 5 C -0.332 4.332 6 C -0.140 4.140 7 C 0.079 3.921 8 N -0.366 5.366 9 C 0.373 3.627 10 O -0.545 6.545 11 N -0.488 5.488 12 C 0.218 3.782 13 C -0.379 4.379 14 C 0.033 3.967 15 N -0.137 5.137 16 C 0.151 3.849 17 C -0.602 4.602 18 H 0.077 0.923 19 C -0.173 4.173 20 N -0.551 5.551 21 Si 0.789 3.211 22 H -0.198 1.198 23 H -0.205 1.205 24 H -0.199 1.199 25 N -0.191 5.191 26 H 0.300 0.700 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.202 0.798 31 H 0.194 0.806 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.237 0.763 35 H 0.190 0.810 36 H 0.239 0.761 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.083 16.146 9.964 22.494 hybrid contribution -2.195 -0.832 -0.477 2.396 sum 9.888 15.314 9.486 20.549 Atomic orbital electron populations 1.20555 0.89333 1.02923 1.02771 1.18927 0.98001 0.91540 1.02971 1.25695 0.95920 1.02901 1.11004 1.84136 1.05988 0.98820 1.72137 1.25799 0.99010 1.00666 1.07750 1.18791 0.93254 0.95084 1.06887 1.19548 0.97941 0.91272 0.83298 1.44659 1.63665 1.17884 1.10376 1.16898 0.78618 0.82379 0.84853 1.90705 1.63184 1.51252 1.49326 1.68096 1.37584 1.19342 1.23732 1.18922 0.85663 0.89881 0.83732 1.22296 1.17051 0.96065 1.02451 1.23333 0.91914 1.00457 0.81039 1.47835 1.50832 1.05349 1.09654 1.19727 0.91993 0.88335 0.84881 1.21645 0.92015 1.25699 1.20802 0.92278 1.25602 1.03366 0.94135 0.94244 1.69968 1.37849 1.25920 1.21389 0.85402 0.79399 0.78281 0.77991 1.19758 1.20467 1.19893 1.44411 1.55293 1.09293 1.10085 0.70039 0.90564 0.90153 0.92759 0.79801 0.80599 0.92041 0.91965 0.76251 0.80987 0.76072 0.93887 0.91075 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.77 9.61 71.24 0.68 -1.09 16 2 C -0.10 -1.99 5.80 -20.92 -0.12 -2.11 16 3 C -0.22 -3.48 10.98 66.72 0.73 -2.75 16 4 S 0.12 1.86 23.34 -56.49 -1.32 0.54 16 5 C -0.20 -3.58 10.95 66.72 0.73 -2.85 16 6 C -0.13 -2.71 5.17 -20.92 -0.11 -2.82 16 7 C 0.21 5.46 5.11 85.63 0.44 5.90 16 8 N -0.71 -22.16 5.27 -482.82 -2.54 -24.70 16 9 C 0.67 26.73 8.47 179.35 1.52 28.25 16 10 O -0.66 -29.17 13.26 -4.80 -0.06 -29.24 16 11 N -0.72 -28.92 10.59 -322.55 -3.42 -32.33 16 12 C 0.47 18.47 8.07 133.95 1.08 19.55 16 13 C -0.35 -12.95 9.52 22.24 0.21 -12.74 16 14 C 0.18 5.79 11.45 83.22 0.95 6.74 16 15 N -0.35 -12.75 3.63 -350.84 -1.28 -14.03 16 16 C 0.27 10.95 6.19 85.64 0.53 11.48 16 17 C -0.56 -26.33 9.39 25.60 0.24 -26.09 16 18 H 0.06 2.86 7.81 -2.91 -0.02 2.84 16 19 C 0.03 1.38 5.46 84.65 0.46 1.84 16 20 N -0.91 -45.77 13.29 21.45 0.28 -45.49 16 21 Si 0.96 38.88 29.54 68.60 2.03 40.91 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 25 N -0.47 -16.63 7.38 -54.78 -0.40 -17.04 16 26 H 0.45 14.23 8.96 -213.29 -1.91 12.32 16 27 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.08 1.20 8.12 -2.39 -0.02 1.18 16 29 H 0.05 1.23 7.11 -2.38 -0.02 1.21 16 30 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 31 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.06 1.73 7.71 -2.38 -0.02 1.72 16 33 H 0.06 1.70 8.07 -2.39 -0.02 1.68 16 34 H 0.40 11.54 8.56 -92.71 -0.79 10.75 16 35 H 0.17 6.91 5.77 -2.91 -0.02 6.89 16 36 H 0.22 5.40 8.06 -2.91 -0.02 5.38 16 37 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.07 2.89 8.14 -2.39 -0.02 2.88 16 39 H 0.27 13.00 8.31 -92.70 -0.77 12.23 16 Total: -1.00 -61.10 352.82 -0.95 -62.05 By element: Atomic # 1 Polarization: 37.61 SS G_CDS: -1.60 Total: 36.02 kcal Atomic # 6 Polarization: 15.95 SS G_CDS: 7.35 Total: 23.31 kcal Atomic # 7 Polarization: -126.23 SS G_CDS: -7.36 Total: -133.59 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.06 Total: -29.24 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -1.32 Total: 0.54 kcal Total: -61.10 -0.95 -62.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488542454.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.521 kcal (2) G-P(sol) polarization free energy of solvation -61.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds