Wall clock time and date at job start Tue Mar 31 2020 12:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39760 * 125.83847 * 2 1 4 4 C 1.36109 * 107.82449 * 180.15932 * 3 2 1 5 5 N 1.39479 * 126.21735 * 179.84446 * 4 3 2 6 6 C 1.34777 * 119.99460 * 359.69240 * 5 4 3 7 7 O 1.21293 * 120.00456 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.72541 * 6 5 4 9 9 C 1.53004 * 109.47208 * 180.27843 * 8 6 5 10 10 C 1.50700 * 109.47208 * 180.02562 * 9 8 6 11 11 C 1.33634 * 126.03739 * 89.71611 * 10 9 8 12 12 N 1.31786 * 114.49629 * 179.79056 * 11 10 9 13 13 C 1.29025 * 117.12806 * 0.51306 * 12 11 10 14 14 S 1.70982 * 110.16373 * 359.72250 * 13 12 11 15 15 N 1.35264 * 107.57265 * 359.58737 * 4 3 2 16 16 C 1.46490 * 126.04937 * 180.23556 * 15 4 3 17 17 C 1.50708 * 109.46990 * 90.00107 * 16 15 4 18 18 H 1.08000 * 119.99671 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00030 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99944 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 120.00077 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46926 * 90.00052 * 21 19 17 23 23 H 1.48503 * 109.47118 * 210.00020 * 21 19 17 24 24 H 1.48496 * 109.47100 * 329.99888 * 21 19 17 25 25 N 1.30848 * 125.83569 * 179.69263 * 2 1 3 26 26 H 1.09004 * 109.47206 * 270.28172 * 1 2 3 27 27 H 1.09002 * 109.46598 * 30.27555 * 1 2 3 28 28 H 1.08996 * 109.47328 * 150.27965 * 1 2 3 29 29 H 1.07998 * 126.08710 * 0.02562 * 3 2 1 30 30 H 0.97001 * 120.00055 * 179.69940 * 5 4 3 31 31 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 32 32 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 33 33 H 1.09000 * 109.46887 * 300.00372 * 9 8 6 34 34 H 1.08998 * 109.46846 * 59.99549 * 9 8 6 35 35 H 1.07999 * 122.74767 * 359.97438 * 11 10 9 36 36 H 1.07996 * 124.91901 * 179.67526 * 13 12 11 37 37 H 1.09003 * 109.47347 * 209.99472 * 16 15 4 38 38 H 1.09003 * 109.47685 * 330.00117 * 16 15 4 39 39 H 0.97003 * 119.99979 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6196 0.7121 -0.0036 5 7 4.7513 1.5274 -0.0079 6 6 4.6157 2.8683 -0.0150 7 8 3.5096 3.3661 -0.0172 8 6 5.8384 3.7492 -0.0134 9 6 5.4090 5.2178 -0.0155 10 6 6.6317 6.0987 -0.0145 11 6 7.2744 6.5528 -1.0946 12 7 8.3182 7.3125 -0.8301 13 6 8.5979 7.5161 0.4129 14 16 7.4708 6.7056 1.4110 15 7 3.6092 -0.6405 0.0035 16 6 4.7870 -1.5116 0.0076 17 6 5.1913 -1.8029 1.4299 18 1 4.6276 -1.3809 2.2488 19 6 6.2809 -2.6081 1.6857 20 7 6.6335 -2.8627 2.9269 21 14 7.2555 -3.3386 0.2694 22 1 8.3469 -2.4070 -0.1129 23 1 7.8384 -4.6387 0.6881 24 1 6.3560 -3.5509 -0.8929 25 7 2.2730 -1.0608 0.0057 26 1 -0.3634 0.0051 1.0277 27 1 -0.3632 0.8875 -0.5181 28 1 -0.3634 -0.8924 -0.5095 29 1 1.9902 2.1597 0.0004 30 1 5.6359 1.1293 -0.0058 31 1 6.4319 3.5456 0.8780 32 1 6.4354 3.5440 -0.9020 33 1 4.8155 5.4214 -0.9068 34 1 4.8120 5.4230 0.8731 35 1 6.9620 6.3190 -2.1016 36 1 9.4246 8.1116 0.7711 37 1 4.5496 -2.4460 -0.5011 38 1 5.6082 -1.0149 -0.5091 39 1 7.3998 -3.4295 3.1069 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562413171.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:56 Heat of formation + Delta-G solvation = 61.013063 kcal Electronic energy + Delta-G solvation = -23412.133503 eV Core-core repulsion = 19868.501551 eV Total energy + Delta-G solvation = -3543.631952 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.45382 -40.80463 -40.38163 -36.30842 -35.59709 -35.22575 -33.98798 -31.31041 -30.73810 -29.51758 -28.02074 -26.91125 -24.79062 -24.21549 -22.49730 -21.26595 -20.92579 -20.68697 -19.27141 -19.02151 -18.47761 -17.77310 -17.03272 -16.62792 -16.45601 -16.04188 -15.70948 -15.52041 -15.13399 -14.85548 -14.84500 -14.42440 -14.36762 -14.16405 -13.78162 -13.65375 -13.50497 -13.22929 -13.13345 -12.91753 -12.65134 -12.54801 -12.13197 -11.87390 -11.84896 -11.75876 -11.48408 -10.95450 -10.92026 -10.58506 -10.19916 -9.86155 -9.62343 -9.07591 -8.43274 -6.56019 -0.23383 0.44882 0.77377 0.84184 1.29484 1.32295 1.39308 1.47181 1.63158 1.89042 2.05176 2.21475 2.24042 2.88324 3.35924 3.56493 3.78399 3.90321 4.01801 4.10187 4.26324 4.40622 4.45376 4.48710 4.58150 4.59031 4.68073 4.87688 4.88663 4.94827 4.98033 5.07109 5.13736 5.19042 5.22403 5.25329 5.86583 5.98654 6.20826 6.33409 6.48426 6.76578 6.93321 7.01147 7.09340 8.73103 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.010632 B = 0.003394 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.914423 B = 8247.664589 C =10217.829099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.059 3.941 3 C -0.307 4.307 4 C 0.302 3.698 5 N -0.641 5.641 6 C 0.522 3.478 7 O -0.538 6.538 8 C -0.121 4.121 9 C -0.020 4.020 10 C -0.220 4.220 11 C 0.025 3.975 12 N -0.503 5.503 13 C 0.016 3.984 14 S 0.137 5.863 15 N -0.368 5.368 16 C 0.239 3.761 17 C -0.554 4.554 18 H 0.022 0.978 19 C 0.026 3.974 20 N -0.934 5.934 21 Si 0.949 3.051 22 H -0.244 1.244 23 H -0.280 1.280 24 H -0.248 1.248 25 N -0.331 5.331 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.171 0.829 30 H 0.423 0.577 31 H 0.113 0.887 32 H 0.129 0.871 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.188 0.812 36 H 0.225 0.775 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.675 19.209 -7.885 20.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 C -0.339 4.339 4 C 0.079 3.921 5 N -0.290 5.290 6 C 0.311 3.689 7 O -0.414 6.414 8 C -0.161 4.161 9 C -0.060 4.060 10 C -0.342 4.342 11 C -0.126 4.126 12 N -0.217 5.217 13 C -0.281 4.281 14 S 0.390 5.610 15 N -0.153 5.153 16 C 0.119 3.881 17 C -0.592 4.592 18 H 0.040 0.960 19 C -0.175 4.175 20 N -0.572 5.572 21 Si 0.770 3.230 22 H -0.168 1.168 23 H -0.205 1.205 24 H -0.171 1.171 25 N -0.155 5.155 26 H 0.100 0.900 27 H 0.116 0.884 28 H 0.095 0.905 29 H 0.188 0.812 30 H 0.260 0.740 31 H 0.132 0.868 32 H 0.147 0.853 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.205 0.795 36 H 0.241 0.759 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.484 18.369 -7.089 19.845 hybrid contribution 0.806 -0.345 -0.596 1.060 sum 3.290 18.024 -7.684 19.868 Atomic orbital electron populations 1.20233 0.83957 1.04196 1.03605 1.22903 0.98758 0.90159 0.98785 1.21511 0.89097 1.00876 1.22369 1.18359 0.89799 0.82707 1.01200 1.43076 1.07446 1.06224 1.72211 1.21412 0.92561 0.80585 0.74356 1.90625 1.28420 1.73822 1.48528 1.21722 0.94084 0.92847 1.07489 1.19679 0.91657 0.89330 1.05332 1.25966 1.04682 1.08093 0.95411 1.22057 0.92194 0.97245 1.01073 1.66383 1.17852 1.17129 1.20352 1.28897 1.04566 1.03763 0.90860 1.84232 1.21985 1.43698 1.11093 1.48822 1.06080 1.02828 1.57550 1.19738 0.80581 0.90718 0.97081 1.21222 1.14067 1.32980 0.90971 0.95951 1.25815 0.97568 0.95136 0.98942 1.70034 1.27841 1.37793 1.21493 0.85711 0.79518 0.78930 0.78884 1.16787 1.20545 1.17130 1.77305 0.86322 1.23580 1.28330 0.89984 0.88397 0.90526 0.81228 0.73958 0.86842 0.85331 0.88248 0.90133 0.79497 0.75883 0.93170 0.91451 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.68 10.44 71.24 0.74 -0.94 16 2 C 0.06 2.32 7.21 43.07 0.31 2.63 16 3 C -0.31 -12.09 9.58 22.14 0.21 -11.88 16 4 C 0.30 12.21 7.66 131.31 1.01 13.21 16 5 N -0.64 -20.27 5.42 -308.55 -1.67 -21.94 16 6 C 0.52 13.96 7.79 87.66 0.68 14.64 16 7 O -0.54 -17.29 13.11 -3.07 -0.04 -17.33 16 8 C -0.12 -2.03 5.68 29.85 0.17 -1.86 16 9 C -0.02 -0.32 5.04 29.85 0.15 -0.17 16 10 C -0.22 -3.48 5.85 24.64 0.14 -3.33 16 11 C 0.02 0.42 11.25 83.65 0.94 1.36 16 12 N -0.50 -9.50 10.54 -203.75 -2.15 -11.65 16 13 C 0.02 0.22 12.23 130.65 1.60 1.82 16 14 S 0.14 1.93 23.22 -56.49 -1.31 0.62 16 15 N -0.37 -16.80 3.60 -348.71 -1.26 -18.06 16 16 C 0.24 10.98 5.07 85.64 0.43 11.42 16 17 C -0.55 -30.81 9.94 25.60 0.25 -30.55 16 18 H 0.02 1.46 8.06 -2.91 -0.02 1.44 16 19 C 0.03 1.40 5.47 84.65 0.46 1.86 16 20 N -0.93 -55.13 13.96 21.45 0.30 -54.83 16 21 Si 0.95 38.94 27.47 68.60 1.88 40.83 16 22 H -0.24 -8.97 7.11 99.48 0.71 -8.26 16 23 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.25 -9.51 6.54 99.48 0.65 -8.86 16 25 N -0.33 -15.26 12.56 -47.45 -0.60 -15.86 16 26 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 27 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.17 6.38 5.83 -2.91 -0.02 6.37 16 30 H 0.42 11.80 7.96 -92.71 -0.74 11.06 16 31 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.10 1.57 8.10 -2.39 -0.02 1.55 16 34 H 0.08 1.45 8.10 -2.39 -0.02 1.43 16 35 H 0.19 2.46 8.06 -2.91 -0.02 2.44 16 36 H 0.22 1.60 8.06 -2.91 -0.02 1.58 16 37 H 0.05 2.34 7.20 -2.39 -0.02 2.32 16 38 H 0.07 2.63 6.93 -2.39 -0.02 2.61 16 39 H 0.27 14.91 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -76.27 351.17 2.57 -73.70 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: 0.30 Total: 26.32 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 7.11 Total: -1.80 kcal Atomic # 7 Polarization: -116.96 SS G_CDS: -5.37 Total: -122.34 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.04 Total: -17.33 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 1.88 Total: 40.83 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -1.31 Total: 0.62 kcal Total: -76.27 2.57 -73.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562413171.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.717 kcal (2) G-P(sol) polarization free energy of solvation -76.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds