Wall clock time and date at job start Tue Mar 31 2020 13:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46941 * 2 1 4 4 H 1.09003 * 109.46801 * 184.49724 * 3 2 1 5 5 C 1.50698 * 109.47173 * 64.50657 * 3 2 1 6 6 H 1.07998 * 119.99651 * 239.99673 * 5 3 2 7 7 C 1.37874 * 120.00583 * 59.99197 * 5 3 2 8 8 N 1.31520 * 119.99619 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00310 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47202 * 90.00241 * 9 7 5 11 11 H 1.48500 * 109.47120 * 210.00058 * 9 7 5 12 12 H 1.48498 * 109.47339 * 330.00098 * 9 7 5 13 13 N 1.46892 * 109.47436 * 304.49658 * 3 2 1 14 14 C 1.46900 * 111.00474 * 270.15904 * 13 3 2 15 15 C 1.50699 * 109.47153 * 184.95471 * 14 13 3 16 16 O 1.21291 * 120.00223 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00110 * 180.02562 * 15 14 13 18 18 C 1.39641 * 119.99990 * 185.69293 * 17 15 14 19 19 C 1.36190 * 120.12120 * 24.94790 * 18 17 15 20 20 C 1.39323 * 121.49958 * 179.75244 * 19 18 17 21 21 C 1.35568 * 121.66844 * 0.55990 * 20 19 18 22 22 C 1.41832 * 120.03379 * 359.44341 * 21 20 19 23 23 N 1.32331 * 130.97205 * 180.27361 * 22 21 20 24 24 S 1.55541 * 109.39984 * 180.02562 * 23 22 21 25 25 N 1.55537 * 100.18968 * 0.02562 * 24 23 22 26 26 C 1.32226 * 109.42180 * 359.97438 * 25 24 23 27 27 H 1.09005 * 109.46504 * 304.99200 * 1 2 3 28 28 H 1.09002 * 109.47060 * 64.98994 * 1 2 3 29 29 H 1.08994 * 109.47278 * 184.99296 * 1 2 3 30 30 H 1.09004 * 109.46819 * 240.00111 * 2 1 3 31 31 H 1.08993 * 109.47400 * 120.00398 * 2 1 3 32 32 H 0.97005 * 119.99643 * 180.02562 * 8 7 5 33 33 H 1.00901 * 111.00125 * 146.20591 * 13 3 2 34 34 H 1.09003 * 109.46634 * 64.96243 * 14 13 3 35 35 H 1.08996 * 109.46921 * 304.95870 * 14 13 3 36 36 H 0.96996 * 119.99496 * 5.69346 * 17 15 14 37 37 H 1.08001 * 119.25306 * 0.03749 * 19 18 17 38 38 H 1.08006 * 119.17146 * 180.30244 * 20 19 18 39 39 H 1.07993 * 119.98130 * 179.72358 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1270 1.4435 -0.0806 5 6 1.6309 2.1199 1.2825 6 1 1.0052 2.9997 1.2526 7 6 2.0552 1.6166 2.4939 8 7 2.8174 0.5455 2.5302 9 14 1.5474 2.4560 4.0835 10 1 0.2723 1.8688 4.5679 11 1 2.6043 2.2574 5.1076 12 1 1.3619 3.9088 3.8388 13 7 1.4637 2.1656 -1.1414 14 6 2.3209 2.0450 -2.3282 15 6 1.7627 2.8961 -3.4396 16 8 0.7507 3.5402 -3.2605 17 7 2.3881 2.9415 -4.6327 18 6 1.9408 3.8192 -5.6224 19 6 1.2576 4.9461 -5.2787 20 6 0.8027 5.8440 -6.2420 21 6 1.0085 5.6329 -7.5652 22 6 1.7126 4.4808 -7.9992 23 7 2.0359 4.0679 -9.2142 24 16 2.8150 2.7254 -9.1134 25 7 2.8257 2.5287 -7.5706 26 6 2.1961 3.5385 -6.9942 27 1 -0.3632 0.5894 0.8420 28 1 -0.3633 0.4345 -0.9313 29 1 -0.3633 -1.0237 0.0894 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.1156 0.1911 3.3826 33 1 1.3001 3.1342 -0.9105 34 1 2.3527 1.0037 -2.6490 35 1 3.3286 2.3811 -2.0842 36 1 3.1488 2.3646 -4.8037 37 1 1.0681 5.1508 -4.2353 38 1 0.2690 6.7285 -5.9269 39 1 0.6400 6.3448 -8.2890 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573575230.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:09 Heat of formation + Delta-G solvation = 49.904356 kcal Electronic energy + Delta-G solvation = -23664.548984 eV Core-core repulsion = 20120.435323 eV Total energy + Delta-G solvation = -3544.113661 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.40085 -39.83567 -36.74818 -35.96219 -35.10290 -33.39041 -32.62353 -30.83573 -29.51667 -27.76656 -27.11629 -24.94180 -23.19073 -23.00615 -21.95960 -20.51665 -19.55431 -19.07961 -17.99154 -17.84977 -16.67706 -16.14402 -15.98183 -15.57208 -15.22533 -15.15584 -14.75550 -14.09790 -13.76522 -13.25766 -12.99986 -12.81517 -12.58498 -12.34713 -12.05368 -11.99388 -11.89719 -11.83773 -11.49522 -11.22000 -11.15557 -10.96927 -10.79641 -10.43626 -10.30387 -10.14312 -9.90481 -9.52830 -9.38823 -8.96238 -8.83430 -8.49258 -7.93551 -7.35074 -6.05965 -4.12127 -0.36156 1.14012 1.17435 1.46862 1.50847 2.66356 2.85745 3.28777 3.35536 3.38779 3.43644 3.97365 4.38097 4.60477 4.69471 4.74430 4.92257 5.12619 5.22444 5.31854 5.38451 5.65845 5.77027 5.79591 5.98812 6.07461 6.21770 6.33422 6.50476 6.65894 6.77041 6.83242 7.14825 7.22290 7.31629 7.43481 7.69995 7.75337 7.80211 8.14438 8.21036 8.30287 8.58587 8.96766 9.53290 10.99604 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.026308 B = 0.002535 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.042650 B =11041.466591 C =11638.618361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 C 0.217 3.783 4 H 0.004 0.996 5 C -0.515 4.515 6 H 0.061 0.939 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.895 3.105 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.669 5.669 14 C 0.046 3.954 15 C 0.513 3.487 16 O -0.498 6.498 17 N -0.668 5.668 18 C 0.210 3.790 19 C -0.134 4.134 20 C -0.054 4.054 21 C -0.107 4.107 22 C 0.103 3.897 23 N -0.600 5.600 24 S 0.787 5.213 25 N -0.589 5.589 26 C 0.063 3.937 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.014 0.986 30 H 0.009 0.991 31 H 0.090 0.910 32 H 0.261 0.739 33 H 0.343 0.657 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.416 0.584 37 H 0.163 0.837 38 H 0.141 0.859 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.720 6.081 -21.957 22.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.143 4.143 3 C 0.109 3.891 4 H 0.022 0.978 5 C -0.554 4.554 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.723 3.277 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.303 5.303 14 C -0.087 4.087 15 C 0.302 3.698 16 O -0.370 6.370 17 N -0.312 5.312 18 C 0.106 3.894 19 C -0.161 4.161 20 C -0.079 4.079 21 C -0.132 4.132 22 C -0.056 4.056 23 N -0.451 5.451 24 S 0.833 5.167 25 N -0.440 5.440 26 C -0.099 4.099 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.033 0.967 30 H 0.027 0.973 31 H 0.108 0.892 32 H 0.071 0.929 33 H 0.162 0.838 34 H 0.114 0.886 35 H 0.074 0.926 36 H 0.252 0.748 37 H 0.180 0.820 38 H 0.159 0.841 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.593 4.511 -23.439 23.922 hybrid contribution 0.235 1.505 2.203 2.678 sum 1.828 6.016 -21.236 22.147 Atomic orbital electron populations 1.21452 0.97444 0.97509 1.01454 1.21474 0.95021 0.98117 0.99694 1.19205 0.92341 0.91281 0.86234 0.97793 1.21218 1.31591 1.12184 0.90389 0.92090 1.24881 0.94890 0.94973 0.99063 1.69878 1.35069 1.22039 1.25774 0.86542 0.78235 0.79910 0.83015 1.20572 1.21329 1.19889 1.60589 1.46239 1.19103 1.04330 1.21864 0.96123 0.99362 0.91345 1.21415 0.83466 0.82259 0.82635 1.90644 1.22864 1.42770 1.80745 1.43650 1.34125 1.40290 1.13086 1.16651 0.98905 0.90876 0.82942 1.21085 1.00283 0.91931 1.02806 1.20682 0.96844 0.98850 0.91530 1.20173 1.01525 0.95163 0.96332 1.21136 1.01010 0.98417 0.85040 1.72241 1.24387 1.20115 1.28389 1.78509 1.31589 1.07762 0.98795 1.72064 1.26595 1.29686 1.15684 1.21150 1.01265 0.91444 0.95991 0.92600 0.93778 0.96702 0.97256 0.89194 0.92887 0.83843 0.88601 0.92563 0.74802 0.81973 0.84100 0.84399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 9.51 37.16 0.35 -2.36 16 2 C -0.10 -2.47 5.69 -26.73 -0.15 -2.62 16 3 C 0.22 5.18 2.32 -68.87 -0.16 5.02 16 4 H 0.00 0.11 7.65 -51.93 -0.40 -0.28 16 5 C -0.52 -13.54 7.47 -34.44 -0.26 -13.79 16 6 H 0.06 1.61 7.54 -52.49 -0.40 1.21 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.54 11.30 55.43 0.63 -23.91 16 9 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 13 N -0.67 -13.78 5.18 -109.23 -0.57 -14.35 16 14 C 0.05 0.75 6.06 -4.98 -0.03 0.72 16 15 C 0.51 7.90 7.64 -10.98 -0.08 7.81 16 16 O -0.50 -8.95 13.26 5.55 0.07 -8.88 16 17 N -0.67 -8.53 5.36 -9.70 -0.05 -8.58 16 18 C 0.21 2.72 6.46 -83.47 -0.54 2.18 16 19 C -0.13 -1.63 8.62 -39.91 -0.34 -1.97 16 20 C -0.05 -0.51 9.88 -40.13 -0.40 -0.91 16 21 C -0.11 -1.05 10.08 -39.16 -0.39 -1.45 16 22 C 0.10 1.22 7.16 -83.17 -0.60 0.62 16 23 N -0.60 -6.67 11.44 25.59 0.29 -6.38 16 24 S 0.79 6.73 23.60 -107.50 -2.54 4.19 16 25 N -0.59 -6.78 11.43 25.63 0.29 -6.48 16 26 C 0.06 0.79 7.08 -83.01 -0.59 0.20 16 27 H 0.05 1.34 7.21 -51.93 -0.37 0.96 16 28 H 0.04 0.96 7.66 -51.93 -0.40 0.56 16 29 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.01 0.19 8.02 -51.93 -0.42 -0.22 16 31 H 0.09 2.37 5.96 -51.93 -0.31 2.06 16 32 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.34 7.24 7.62 -39.29 -0.30 6.94 16 34 H 0.10 1.49 8.02 -51.93 -0.42 1.08 16 35 H 0.06 0.87 7.93 -51.93 -0.41 0.45 16 36 H 0.42 4.49 8.79 -40.82 -0.36 4.13 16 37 H 0.16 2.18 5.68 -52.49 -0.30 1.88 16 38 H 0.14 0.94 8.06 -52.48 -0.42 0.51 16 39 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 340.35 15.07 5.13 5.13 Total: -1.00 -30.78 340.35 -9.52 -40.30 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -4.48 Total: 8.05 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -3.28 Total: -4.93 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: 0.59 Total: -59.70 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.07 Total: -8.88 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 6.73 SS G_CDS: -2.54 Total: 4.19 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.78 -9.52 -40.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573575230.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.205 kcal (2) G-P(sol) polarization free energy of solvation -30.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds