Wall clock time and date at job start Tue Mar 31 2020 13:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46941 * 2 1 4 4 H 1.09003 * 109.46801 * 184.49724 * 3 2 1 5 5 C 1.50698 * 109.47173 * 64.50657 * 3 2 1 6 6 H 1.07998 * 119.99651 * 239.99673 * 5 3 2 7 7 C 1.37874 * 120.00583 * 59.99197 * 5 3 2 8 8 N 1.31520 * 119.99619 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00310 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47202 * 90.00241 * 9 7 5 11 11 H 1.48500 * 109.47120 * 210.00058 * 9 7 5 12 12 H 1.48498 * 109.47339 * 330.00098 * 9 7 5 13 13 N 1.46892 * 109.47436 * 304.49658 * 3 2 1 14 14 C 1.46900 * 111.00474 * 270.15904 * 13 3 2 15 15 C 1.50699 * 109.47153 * 184.95471 * 14 13 3 16 16 O 1.21291 * 120.00223 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00110 * 180.02562 * 15 14 13 18 18 C 1.39641 * 119.99990 * 185.69293 * 17 15 14 19 19 C 1.36190 * 120.12120 * 24.94790 * 18 17 15 20 20 C 1.39323 * 121.49958 * 179.75244 * 19 18 17 21 21 C 1.35568 * 121.66844 * 0.55990 * 20 19 18 22 22 C 1.41832 * 120.03379 * 359.44341 * 21 20 19 23 23 N 1.32331 * 130.97205 * 180.27361 * 22 21 20 24 24 S 1.55541 * 109.39984 * 180.02562 * 23 22 21 25 25 N 1.55537 * 100.18968 * 0.02562 * 24 23 22 26 26 C 1.32226 * 109.42180 * 359.97438 * 25 24 23 27 27 H 1.09005 * 109.46504 * 304.99200 * 1 2 3 28 28 H 1.09002 * 109.47060 * 64.98994 * 1 2 3 29 29 H 1.08994 * 109.47278 * 184.99296 * 1 2 3 30 30 H 1.09004 * 109.46819 * 240.00111 * 2 1 3 31 31 H 1.08993 * 109.47400 * 120.00398 * 2 1 3 32 32 H 0.97005 * 119.99643 * 180.02562 * 8 7 5 33 33 H 1.00901 * 111.00125 * 146.20591 * 13 3 2 34 34 H 1.09003 * 109.46634 * 64.96243 * 14 13 3 35 35 H 1.08996 * 109.46921 * 304.95870 * 14 13 3 36 36 H 0.96996 * 119.99496 * 5.69346 * 17 15 14 37 37 H 1.08001 * 119.25306 * 0.03749 * 19 18 17 38 38 H 1.08006 * 119.17146 * 180.30244 * 20 19 18 39 39 H 1.07993 * 119.98130 * 179.72358 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1270 1.4435 -0.0806 5 6 1.6309 2.1199 1.2825 6 1 1.0052 2.9997 1.2526 7 6 2.0552 1.6166 2.4939 8 7 2.8174 0.5455 2.5302 9 14 1.5474 2.4560 4.0835 10 1 0.2723 1.8688 4.5679 11 1 2.6043 2.2574 5.1076 12 1 1.3619 3.9088 3.8388 13 7 1.4637 2.1656 -1.1414 14 6 2.3209 2.0450 -2.3282 15 6 1.7627 2.8961 -3.4396 16 8 0.7507 3.5402 -3.2605 17 7 2.3881 2.9415 -4.6327 18 6 1.9408 3.8192 -5.6224 19 6 1.2576 4.9461 -5.2787 20 6 0.8027 5.8440 -6.2420 21 6 1.0085 5.6329 -7.5652 22 6 1.7126 4.4808 -7.9992 23 7 2.0359 4.0679 -9.2142 24 16 2.8150 2.7254 -9.1134 25 7 2.8257 2.5287 -7.5706 26 6 2.1961 3.5385 -6.9942 27 1 -0.3632 0.5894 0.8420 28 1 -0.3633 0.4345 -0.9313 29 1 -0.3633 -1.0237 0.0894 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.1156 0.1911 3.3826 33 1 1.3001 3.1342 -0.9105 34 1 2.3527 1.0037 -2.6490 35 1 3.3286 2.3811 -2.0842 36 1 3.1488 2.3646 -4.8037 37 1 1.0681 5.1508 -4.2353 38 1 0.2690 6.7285 -5.9269 39 1 0.6400 6.3448 -8.2890 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573575230.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:08 Heat of formation + Delta-G solvation = 28.537159 kcal Electronic energy + Delta-G solvation = -23665.475536 eV Core-core repulsion = 20120.435323 eV Total energy + Delta-G solvation = -3545.040212 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.29011 -40.94532 -38.09674 -37.29043 -36.06974 -34.51936 -34.23041 -32.62409 -30.57275 -28.90988 -28.48543 -26.58311 -24.99425 -23.93113 -22.96436 -21.59131 -20.91178 -20.36174 -19.17559 -18.82308 -18.14195 -17.41172 -16.95652 -16.84630 -16.54306 -16.29511 -15.94484 -15.56550 -15.38447 -14.87988 -14.62808 -14.01431 -13.71127 -13.64665 -13.36335 -13.23799 -12.88146 -12.82693 -12.79847 -12.72130 -12.64092 -12.41488 -12.02392 -11.99045 -11.97704 -11.70871 -11.33254 -11.29540 -10.83582 -10.70835 -10.49970 -9.73492 -9.04757 -8.83857 -8.09273 -6.21316 -1.17598 0.31619 0.36819 0.59234 0.75348 1.43229 1.45404 1.52327 1.54088 1.80155 2.44374 2.57555 3.12435 3.19470 3.60812 3.70231 3.80494 3.94958 4.02551 4.34024 4.42893 4.44101 4.50370 4.66788 4.80813 4.82924 4.96696 5.21683 5.23174 5.30665 5.33943 5.38094 5.46376 5.55456 5.72319 5.82396 5.88101 5.91115 6.25274 6.30379 6.45130 6.75319 6.96745 7.03814 7.47469 8.95174 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.026308 B = 0.002535 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.042650 B =11041.466591 C =11638.618361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.102 4.102 3 C 0.224 3.776 4 H -0.019 1.019 5 C -0.528 4.528 6 H 0.054 0.946 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.952 3.048 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.270 1.270 13 N -0.672 5.672 14 C 0.047 3.953 15 C 0.522 3.478 16 O -0.529 6.529 17 N -0.655 5.655 18 C 0.183 3.817 19 C -0.134 4.134 20 C -0.057 4.057 21 C -0.097 4.097 22 C 0.082 3.918 23 N -0.621 5.621 24 S 0.875 5.125 25 N -0.617 5.617 26 C 0.045 3.955 27 H 0.033 0.967 28 H 0.048 0.952 29 H 0.032 0.968 30 H 0.025 0.975 31 H 0.062 0.938 32 H 0.262 0.738 33 H 0.338 0.662 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.424 0.576 37 H 0.147 0.853 38 H 0.171 0.829 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.520 6.618 -23.754 24.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.140 4.140 3 C 0.116 3.884 4 H -0.002 1.002 5 C -0.566 4.566 6 H 0.073 0.927 7 C -0.179 4.179 8 N -0.553 5.553 9 Si 0.778 3.222 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.194 1.194 13 N -0.304 5.304 14 C -0.086 4.086 15 C 0.310 3.690 16 O -0.404 6.404 17 N -0.299 5.299 18 C 0.081 3.919 19 C -0.161 4.161 20 C -0.081 4.081 21 C -0.122 4.122 22 C -0.075 4.075 23 N -0.474 5.474 24 S 0.921 5.079 25 N -0.470 5.470 26 C -0.114 4.114 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.156 0.844 34 H 0.125 0.875 35 H 0.086 0.914 36 H 0.262 0.738 37 H 0.165 0.835 38 H 0.188 0.812 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.397 5.073 -25.254 25.797 hybrid contribution 0.373 1.298 2.529 2.867 sum 1.769 6.371 -22.725 23.668 Atomic orbital electron populations 1.21314 0.96383 0.98288 1.00672 1.21367 0.95859 0.97723 0.99079 1.18983 0.90908 0.91770 0.86786 1.00160 1.21486 1.31308 1.12107 0.91715 0.92732 1.25563 0.94991 0.95546 1.01846 1.69993 1.35907 1.23043 1.26339 0.85644 0.77796 0.79108 0.79618 1.20429 1.20999 1.19429 1.60456 1.47090 1.18476 1.04427 1.21867 0.96031 1.00430 0.90238 1.21045 0.83091 0.81729 0.83092 1.90638 1.24229 1.44098 1.81414 1.43360 1.33989 1.40272 1.12298 1.16794 1.00406 0.91436 0.83309 1.21152 0.99904 0.92351 1.02732 1.20921 0.96885 0.99301 0.91003 1.20522 1.00120 0.94752 0.96833 1.21354 1.01908 0.99131 0.85069 1.72116 1.25179 1.21619 1.28477 1.78131 1.28177 1.05233 0.96357 1.71886 1.27330 1.30187 1.17634 1.21099 1.02287 0.92174 0.95870 0.94746 0.93295 0.94847 0.95660 0.91917 0.92923 0.84414 0.87532 0.91354 0.73813 0.83511 0.81162 0.82022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.83 9.51 71.98 0.68 -4.14 16 2 C -0.10 -4.81 5.69 30.60 0.17 -4.63 16 3 C 0.22 10.83 2.32 44.17 0.10 10.93 16 4 H -0.02 -1.00 7.65 -2.39 -0.02 -1.02 16 5 C -0.53 -28.09 7.47 25.60 0.19 -27.90 16 6 H 0.05 2.91 7.54 -2.91 -0.02 2.89 16 7 C 0.02 1.08 5.29 84.65 0.45 1.53 16 8 N -0.91 -51.04 11.30 21.45 0.24 -50.80 16 9 Si 0.95 43.00 29.54 68.60 2.03 45.03 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 13 N -0.67 -27.86 5.18 -499.49 -2.59 -30.44 16 14 C 0.05 1.52 6.06 85.56 0.52 2.04 16 15 C 0.52 16.04 7.64 87.66 0.67 16.71 16 16 O -0.53 -19.24 13.26 -3.06 -0.04 -19.28 16 17 N -0.65 -16.60 5.36 -302.97 -1.63 -18.22 16 18 C 0.18 4.69 6.46 38.44 0.25 4.94 16 19 C -0.13 -3.23 8.62 22.05 0.19 -3.04 16 20 C -0.06 -0.99 9.88 21.91 0.22 -0.78 16 21 C -0.10 -1.73 10.08 22.54 0.23 -1.50 16 22 C 0.08 1.81 7.16 41.97 0.30 2.11 16 23 N -0.62 -12.49 11.44 -72.95 -0.83 -13.32 16 24 S 0.88 13.00 23.60 -56.49 -1.33 11.67 16 25 N -0.62 -13.30 11.43 -72.83 -0.83 -14.14 16 26 C 0.04 1.08 7.08 42.12 0.30 1.38 16 27 H 0.03 1.63 7.21 -2.38 -0.02 1.62 16 28 H 0.05 2.08 7.66 -2.39 -0.02 2.07 16 29 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.02 1.08 8.02 -2.38 -0.02 1.06 16 31 H 0.06 3.34 5.96 -2.39 -0.01 3.32 16 32 H 0.26 13.97 8.31 -92.70 -0.77 13.20 16 33 H 0.34 14.52 7.62 -89.69 -0.68 13.84 16 34 H 0.11 3.23 8.02 -2.39 -0.02 3.21 16 35 H 0.07 2.09 7.93 -2.39 -0.02 2.07 16 36 H 0.42 8.97 8.79 -92.71 -0.82 8.16 16 37 H 0.15 4.02 5.68 -2.91 -0.02 4.00 16 38 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 39 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -66.04 340.35 -1.09 -67.14 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: -0.38 Total: 24.73 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 4.27 Total: -2.36 kcal Atomic # 7 Polarization: -121.29 SS G_CDS: -5.64 Total: -126.93 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.04 Total: -19.28 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: 13.00 SS G_CDS: -1.33 Total: 11.67 kcal Total: -66.04 -1.09 -67.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573575230.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.673 kcal (2) G-P(sol) polarization free energy of solvation -66.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds