Wall clock time and date at job start Tue Mar 31 2020 13:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46887 * 2 1 4 4 H 1.08997 * 109.47163 * 55.10401 * 3 2 1 5 5 C 1.50703 * 109.46968 * 175.10080 * 3 2 1 6 6 H 1.08006 * 119.99977 * 120.00201 * 5 3 2 7 7 C 1.37874 * 120.00174 * 299.99917 * 5 3 2 8 8 N 1.31518 * 119.99903 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00125 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47152 * 90.00422 * 9 7 5 11 11 H 1.48497 * 109.47185 * 209.99984 * 9 7 5 12 12 H 1.48493 * 109.47562 * 330.00305 * 9 7 5 13 13 N 1.46904 * 109.47393 * 295.09882 * 3 2 1 14 14 C 1.46901 * 110.99900 * 154.21315 * 13 3 2 15 15 C 1.50697 * 109.46761 * 185.21408 * 14 13 3 16 16 C 1.35228 * 126.66321 * 90.31873 * 15 14 13 17 17 C 1.42285 * 103.93860 * 180.16034 * 16 15 14 18 18 C 1.48420 * 126.93907 * 179.85374 * 17 16 15 19 19 C 1.39330 * 120.10954 * 179.70617 * 18 17 16 20 20 C 1.37987 * 119.89737 * 180.02562 * 19 18 17 21 21 C 1.38442 * 120.10125 * 0.02562 * 20 19 18 22 22 Cl 1.73602 * 119.89258 * 179.97438 * 21 20 19 23 23 C 1.38450 * 120.21813 * 0.25177 * 21 20 19 24 24 C 1.37989 * 120.10052 * 359.44868 * 23 21 20 25 25 N 1.30995 * 106.12559 * 359.58659 * 17 16 15 26 26 O 1.20915 * 111.42064 * 0.26680 * 25 17 16 27 27 H 1.08999 * 109.46663 * 180.30967 * 1 2 3 28 28 H 1.08998 * 109.46880 * 300.30425 * 1 2 3 29 29 H 1.08997 * 109.46845 * 60.30270 * 1 2 3 30 30 H 1.09004 * 109.47191 * 240.00276 * 2 1 3 31 31 H 1.08997 * 109.47547 * 120.00152 * 2 1 3 32 32 H 0.97005 * 120.00012 * 179.97438 * 8 7 5 33 33 H 1.00899 * 110.99639 * 278.17154 * 13 3 2 34 34 H 1.09007 * 109.46937 * 65.21427 * 14 13 3 35 35 H 1.08996 * 109.47328 * 305.21799 * 14 13 3 36 36 H 1.07999 * 128.02962 * 0.02562 * 16 15 14 37 37 H 1.08009 * 120.05113 * 0.04542 * 19 18 17 38 38 H 1.07993 * 119.94993 * 180.02562 * 20 19 18 39 39 H 1.07996 * 119.94615 * 179.70071 * 23 21 20 40 40 H 1.08003 * 120.05139 * 180.26993 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9810 0.8429 5 6 3.5421 1.4443 0.1213 6 1 4.1461 1.8894 -0.6556 7 6 4.1453 0.8778 1.2241 8 7 3.4098 0.3354 2.1699 9 14 6.0073 0.8793 1.3742 10 1 6.4463 2.1118 2.0767 11 1 6.4427 -0.3122 2.1462 12 1 6.6132 0.8396 0.0191 13 7 1.6493 2.1001 -1.2542 14 6 1.5526 3.5552 -1.0778 15 6 1.0278 4.1809 -2.3443 16 6 -0.2682 4.4099 -2.6550 17 6 -0.2112 5.0052 -3.9460 18 6 -1.3589 5.4593 -4.7703 19 6 -1.1378 6.0324 -6.0209 20 6 -2.2080 6.4536 -6.7833 21 6 -3.4998 6.3080 -6.3072 22 17 -4.8422 6.8405 -7.2706 23 6 -3.7243 5.7444 -5.0626 24 6 -2.6609 5.3146 -4.2956 25 7 1.0590 5.0768 -4.2579 26 8 1.7556 4.6237 -3.3795 27 1 -0.3632 -1.0277 0.0056 28 1 -0.3633 0.5185 0.8872 29 1 -0.3633 0.5091 -0.8927 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.8342 -0.0635 2.9456 33 1 2.2893 1.8678 -1.9988 34 1 2.5395 3.9605 -0.8541 35 1 0.8736 3.7771 -0.2545 36 1 -1.1435 4.1897 -2.0618 37 1 -0.1304 6.1465 -6.3931 38 1 -2.0377 6.8975 -7.7530 39 1 -4.7336 5.6374 -4.6934 40 1 -2.8372 4.8711 -3.3267 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577527192.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:35 Heat of formation + Delta-G solvation = 55.097977 kcal Electronic energy + Delta-G solvation = -23105.807615 eV Core-core repulsion = 19527.582709 eV Total energy + Delta-G solvation = -3578.224906 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.103 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.86382 -40.30626 -38.17506 -37.55842 -35.39934 -34.96014 -33.49481 -32.29941 -31.80702 -31.14727 -28.62715 -26.30174 -25.14573 -24.45886 -23.96164 -23.07835 -21.45416 -21.08435 -18.80399 -18.58431 -18.44167 -17.79818 -16.86639 -16.76620 -16.36613 -15.93101 -15.54439 -15.23281 -14.75625 -14.70585 -14.63758 -14.50919 -14.10367 -13.89804 -13.34079 -13.11605 -13.05703 -12.95439 -12.88249 -12.80782 -12.66238 -12.52771 -12.22850 -12.03406 -11.80328 -11.51945 -11.48529 -11.44952 -11.01869 -10.44328 -10.42468 -10.14067 -9.49150 -9.15213 -8.05341 -6.25672 -0.39073 0.22889 0.55126 1.06668 1.39930 1.40534 1.43555 1.51173 2.07876 2.42267 2.65929 2.94039 3.16314 3.32438 3.77398 3.82971 3.85473 4.05131 4.20122 4.24374 4.29550 4.50436 4.56072 4.61570 4.73196 4.81328 4.85882 4.90255 4.97550 4.98905 5.13701 5.19368 5.20774 5.38154 5.47578 5.53665 5.64080 5.64737 5.78845 6.10016 6.16673 6.33304 6.70732 6.97147 7.19359 7.45633 8.91887 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.028368 B = 0.002211 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.806837 B =12658.236026 C =13413.621391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C 0.225 3.775 4 H 0.015 0.985 5 C -0.562 4.562 6 H 0.051 0.949 7 C 0.024 3.976 8 N -0.907 5.907 9 Si 0.945 3.055 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.674 5.674 14 C 0.145 3.855 15 C -0.008 4.008 16 C -0.203 4.203 17 C 0.050 3.950 18 C -0.030 4.030 19 C -0.092 4.092 20 C -0.110 4.110 21 C -0.033 4.033 22 Cl -0.063 7.063 23 C -0.106 4.106 24 C -0.078 4.078 25 N -0.382 5.382 26 O 0.083 5.917 27 H 0.041 0.959 28 H 0.036 0.964 29 H 0.059 0.941 30 H 0.025 0.975 31 H 0.063 0.937 32 H 0.262 0.738 33 H 0.332 0.668 34 H 0.044 0.956 35 H 0.110 0.890 36 H 0.199 0.801 37 H 0.132 0.868 38 H 0.153 0.847 39 H 0.162 0.838 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.331 11.516 -13.628 23.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.143 4.143 3 C 0.116 3.884 4 H 0.033 0.967 5 C -0.601 4.601 6 H 0.069 0.931 7 C -0.176 4.176 8 N -0.546 5.546 9 Si 0.772 3.228 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.304 5.304 14 C 0.015 3.985 15 C -0.071 4.071 16 C -0.225 4.225 17 C -0.106 4.106 18 C -0.031 4.031 19 C -0.111 4.111 20 C -0.129 4.129 21 C -0.060 4.060 22 Cl -0.034 7.034 23 C -0.125 4.125 24 C -0.098 4.098 25 N -0.088 5.088 26 O 0.017 5.983 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.148 0.852 34 H 0.063 0.937 35 H 0.128 0.872 36 H 0.216 0.784 37 H 0.150 0.850 38 H 0.171 0.829 39 H 0.180 0.820 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -15.399 11.817 -14.478 24.215 hybrid contribution 1.740 -0.122 0.806 1.921 sum -13.659 11.695 -13.672 22.589 Atomic orbital electron populations 1.21569 0.96180 0.99750 1.00812 1.21374 0.94599 0.98221 1.00056 1.18957 0.91615 0.91658 0.86135 0.96690 1.22172 0.94102 1.38226 1.05572 0.93076 1.25576 1.01653 0.94796 0.95619 1.69982 1.36244 1.38582 1.09776 0.85757 0.81591 0.77482 0.77979 1.20372 1.21049 1.19818 1.60899 1.54993 1.05355 1.09147 1.20283 1.00540 0.88891 0.88778 1.24621 0.91313 0.99042 0.92121 1.22684 0.98313 1.05280 0.96257 1.22230 0.91458 1.01821 0.95125 1.17958 0.90586 1.00726 0.93859 1.21244 0.99832 0.96924 0.93108 1.21144 0.90000 1.00455 1.01293 1.21229 0.89071 1.01723 0.94022 1.98384 1.45246 1.88750 1.71044 1.21257 1.01019 0.97917 0.92285 1.21353 0.89661 0.97806 1.00958 1.74080 1.04814 1.18088 1.11782 1.84767 1.34843 1.57354 1.21305 0.94003 0.94501 0.92216 0.95606 0.91905 0.92852 0.85197 0.93739 0.87228 0.78396 0.84998 0.82886 0.82004 0.82388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 9.80 71.98 0.71 -3.94 16 2 C -0.10 -4.67 5.45 30.60 0.17 -4.50 16 3 C 0.22 10.24 1.98 44.17 0.09 10.33 16 4 H 0.02 0.75 7.70 -2.39 -0.02 0.73 16 5 C -0.56 -28.65 8.47 25.60 0.22 -28.43 16 6 H 0.05 2.60 7.73 -2.91 -0.02 2.57 16 7 C 0.02 1.26 5.29 84.65 0.45 1.71 16 8 N -0.91 -49.40 11.29 21.45 0.24 -49.16 16 9 Si 0.95 41.99 29.54 68.60 2.03 44.02 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 13 N -0.67 -25.39 5.66 -499.45 -2.83 -28.22 16 14 C 0.15 4.72 6.07 85.56 0.52 5.24 16 15 C -0.01 -0.23 7.03 24.99 0.18 -0.06 16 16 C -0.20 -5.12 10.45 22.58 0.24 -4.88 16 17 C 0.05 1.34 7.06 42.99 0.30 1.64 16 18 C -0.03 -0.66 5.88 -20.04 -0.12 -0.78 16 19 C -0.09 -1.87 9.70 22.47 0.22 -1.65 16 20 C -0.11 -1.83 9.81 22.26 0.22 -1.61 16 21 C -0.03 -0.53 6.32 22.37 0.14 -0.38 16 22 Cl -0.06 -0.91 28.95 -2.72 -0.08 -0.99 16 23 C -0.11 -1.53 9.81 22.26 0.22 -1.31 16 24 C -0.08 -1.30 9.60 22.48 0.22 -1.08 16 25 N -0.38 -11.89 11.82 -49.44 -0.58 -12.48 16 26 O 0.08 2.67 11.18 71.39 0.80 3.47 16 27 H 0.04 1.39 8.14 -2.39 -0.02 1.38 16 28 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 2.06 7.76 -2.39 -0.02 2.04 16 30 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.06 3.22 5.95 -2.39 -0.01 3.21 16 32 H 0.26 13.70 8.31 -92.70 -0.77 12.93 16 33 H 0.33 12.89 8.45 -89.69 -0.76 12.13 16 34 H 0.04 1.55 8.11 -2.38 -0.02 1.53 16 35 H 0.11 3.29 7.92 -2.39 -0.02 3.27 16 36 H 0.20 3.74 7.58 -2.91 -0.02 3.72 16 37 H 0.13 2.76 7.89 -2.91 -0.02 2.74 16 38 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 40 H 0.16 1.95 7.23 -2.91 -0.02 1.93 16 Total: -1.00 -57.19 357.64 3.64 -53.55 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.31 Total: 19.53 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 3.75 Total: -29.71 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -3.17 Total: -89.86 kcal Atomic # 8 Polarization: 2.67 SS G_CDS: 0.80 Total: 3.47 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -57.19 3.64 -53.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577527192.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.645 kcal (2) G-P(sol) polarization free energy of solvation -57.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds