Wall clock time and date at job start Tue Mar 31 2020 12:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35246 * 126.06616 * 2 1 4 4 C 1.40402 * 107.86338 * 180.15609 * 3 2 1 5 5 N 1.40190 * 125.97324 * 179.82581 * 4 3 2 6 6 C 1.34774 * 119.99704 * 359.44247 * 5 4 3 7 7 O 1.21599 * 120.00263 * 0.27825 * 6 5 4 8 8 N 1.34772 * 119.99814 * 180.27032 * 6 5 4 9 9 C 1.40129 * 119.99741 * 175.62780 * 8 6 5 10 10 C 1.38699 * 120.07473 * 34.60208 * 9 8 6 11 11 C 1.38195 * 120.01663 * 179.74514 * 10 9 8 12 12 C 1.38552 * 120.17924 * 0.55480 * 11 10 9 13 13 F 1.35098 * 119.92554 * 179.72545 * 12 11 10 14 14 C 1.38343 * 120.14677 * 359.69264 * 12 11 10 15 15 C 1.38738 * 119.98097 * 0.03272 * 14 12 11 16 16 O 1.35779 * 120.08859 * 179.97438 * 15 14 12 17 17 C 1.34804 * 116.99964 * 5.42904 * 16 15 14 18 18 H 1.07998 * 120.00255 * 354.95018 * 17 16 15 19 19 C 1.38639 * 120.00000 * 174.95457 * 17 16 15 20 20 N 1.31573 * 119.99542 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99898 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47078 * 60.00268 * 21 19 17 23 23 H 1.48504 * 109.46904 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47299 * 299.99705 * 21 19 17 25 25 N 1.31215 * 108.05820 * 359.56447 * 4 3 2 26 26 N 1.34964 * 126.07039 * 179.67671 * 2 1 3 27 27 H 0.96992 * 125.97972 * 0.03361 * 26 2 1 28 28 H 1.08998 * 109.47078 * 270.34680 * 1 2 3 29 29 H 1.08992 * 109.47288 * 30.35074 * 1 2 3 30 30 H 1.09007 * 109.46791 * 150.35195 * 1 2 3 31 31 H 1.07995 * 126.06792 * 0.02562 * 3 2 1 32 32 H 0.96997 * 119.99792 * 179.71350 * 5 4 3 33 33 H 0.97000 * 120.00710 * 355.62788 * 8 6 5 34 34 H 1.07996 * 119.98985 * 0.02562 * 10 9 8 35 35 H 1.08005 * 119.91310 * 180.26834 * 11 10 9 36 36 H 1.08006 * 120.01029 * 180.02562 * 14 12 11 37 37 H 0.97001 * 119.99342 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6547 -0.0036 5 7 4.7737 1.4752 -0.0083 6 6 4.6368 2.8159 -0.0209 7 8 3.5275 3.3139 -0.0232 8 7 5.7296 3.6047 -0.0309 9 6 5.5891 4.9949 -0.1365 10 6 4.5084 5.6314 0.4557 11 6 4.3740 7.0031 0.3553 12 6 5.3104 7.7452 -0.3461 13 9 5.1709 9.0853 -0.4457 14 6 6.3884 7.1172 -0.9439 15 6 6.5327 5.7410 -0.8423 16 8 7.5895 5.1223 -1.4287 17 6 8.5220 5.9118 -1.9982 18 1 8.3689 6.9798 -2.0467 19 6 9.6775 5.3527 -2.5220 20 7 9.8642 4.0517 -2.4626 21 14 10.9693 6.4467 -3.3119 22 1 11.4659 7.4269 -2.3129 23 1 12.1004 5.6113 -3.7895 24 1 10.3690 7.1715 -4.4606 25 7 3.6337 -0.6575 0.0037 26 7 2.3017 -1.0909 0.0062 27 1 2.0027 -2.0136 0.0109 28 1 -0.3633 0.0062 1.0276 29 1 -0.3633 0.8867 -0.5192 30 1 -0.3633 -0.8932 -0.5084 31 1 1.9719 2.1211 0.0004 32 1 5.6586 1.0779 -0.0064 33 1 6.6133 3.2102 0.0351 34 1 3.7743 5.0553 0.9994 35 1 3.5341 7.4974 0.8208 36 1 7.1173 7.6979 -1.4898 37 1 10.6725 3.6605 -2.8294 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755275169.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:29 Heat of formation + Delta-G solvation = -7.155588 kcal Electronic energy + Delta-G solvation = -25786.916550 eV Core-core repulsion = 21674.115408 eV Total energy + Delta-G solvation = -4112.801142 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.80479 -42.52067 -41.61928 -40.39918 -38.15039 -36.08482 -35.68869 -34.30227 -32.99785 -31.46114 -31.01429 -29.66119 -27.93266 -27.38066 -24.65200 -23.64899 -22.57885 -22.05396 -21.31215 -20.13797 -19.66930 -19.28189 -18.34620 -17.97417 -17.24607 -16.96769 -16.76995 -16.64771 -16.53007 -15.97268 -15.88405 -15.61092 -15.38520 -15.23216 -14.90643 -14.59951 -14.05537 -13.89437 -13.77703 -13.64104 -13.41848 -13.04080 -13.02140 -12.57974 -12.34336 -12.16871 -12.07511 -11.75487 -11.63095 -11.29883 -11.00036 -10.80862 -9.74581 -9.56668 -9.41335 -8.76020 -8.49995 -6.16337 0.19387 0.49083 0.79829 1.03245 1.38047 1.46364 1.51743 1.53654 2.12363 2.16095 2.22890 2.69390 2.98475 3.06722 3.19097 3.47294 3.79105 3.96994 4.06787 4.19425 4.36876 4.40688 4.55930 4.64898 4.81371 4.92883 4.96893 5.00076 5.17561 5.20749 5.24612 5.30666 5.36967 5.56466 5.66270 5.81236 5.94109 6.06038 6.38833 6.59930 6.87898 6.94549 7.26572 7.63312 8.70042 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.013090 B = 0.003501 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.488167 B = 7995.719611 C = 9908.389815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.114 3.886 3 C -0.301 4.301 4 C 0.308 3.692 5 N -0.640 5.640 6 C 0.716 3.284 7 O -0.576 6.576 8 N -0.656 5.656 9 C 0.075 3.925 10 C -0.046 4.046 11 C -0.202 4.202 12 C 0.125 3.875 13 F -0.144 7.144 14 C -0.264 4.264 15 C 0.134 3.866 16 O -0.202 6.202 17 C -0.416 4.416 18 H 0.100 0.900 19 C -0.009 4.009 20 N -0.905 5.905 21 Si 1.010 2.990 22 H -0.259 1.259 23 H -0.272 1.272 24 H -0.262 1.262 25 N -0.351 5.351 26 N -0.458 5.458 27 H 0.455 0.545 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.160 0.840 32 H 0.422 0.578 33 H 0.416 0.584 34 H 0.158 0.842 35 H 0.160 0.840 36 H 0.137 0.863 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.632 -6.534 6.012 17.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.016 4.016 3 C -0.332 4.332 4 C 0.052 3.948 5 N -0.291 5.291 6 C 0.416 3.584 7 O -0.453 6.453 8 N -0.303 5.303 9 C -0.020 4.020 10 C -0.066 4.066 11 C -0.222 4.222 12 C 0.105 3.895 13 F -0.123 7.123 14 C -0.285 4.285 15 C 0.080 3.920 16 O -0.107 6.107 17 C -0.492 4.492 18 H 0.118 0.882 19 C -0.209 4.209 20 N -0.542 5.542 21 Si 0.830 3.170 22 H -0.183 1.183 23 H -0.196 1.196 24 H -0.186 1.186 25 N -0.183 5.183 26 N -0.171 5.171 27 H 0.303 0.697 28 H 0.117 0.883 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.177 0.823 32 H 0.259 0.741 33 H 0.253 0.747 34 H 0.175 0.825 35 H 0.178 0.822 36 H 0.154 0.846 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.640 -7.458 5.910 17.461 hybrid contribution 1.417 0.552 -0.585 1.630 sum -13.223 -6.906 5.325 15.839 Atomic orbital electron populations 1.20633 0.83560 1.05470 1.05015 1.21669 0.96541 0.86055 0.97380 1.21669 0.89975 1.01393 1.20123 1.19011 0.87688 0.89223 0.98889 1.41446 1.08232 1.03426 1.75973 1.15571 0.84489 0.80505 0.77787 1.90789 1.24035 1.73383 1.57081 1.42052 1.08837 1.04206 1.75170 1.16858 0.99137 0.81574 1.04470 1.20894 0.95806 0.93437 0.96480 1.20890 1.01730 0.93497 1.06078 1.17477 0.95851 0.76752 0.99382 1.91432 1.95710 1.30460 1.94694 1.20919 1.02476 0.94443 1.10686 1.19150 0.89983 0.91002 0.91856 1.83913 1.28433 1.35214 1.63182 1.21717 0.97829 0.91859 1.37793 0.88220 1.26374 0.99115 0.97991 0.97370 1.70117 1.28078 1.11760 1.44238 0.84750 0.76321 0.77235 0.78661 1.18312 1.19634 1.18623 1.77250 0.99003 1.09054 1.32965 1.45824 1.01794 1.09019 1.60468 0.69697 0.88267 0.89028 0.88450 0.82286 0.74083 0.74706 0.82493 0.82229 0.84586 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.88 10.43 71.24 0.74 -0.13 16 2 C 0.11 2.29 7.20 41.39 0.30 2.58 16 3 C -0.30 -8.63 9.52 22.11 0.21 -8.42 16 4 C 0.31 9.55 8.11 133.31 1.08 10.63 16 5 N -0.64 -19.75 5.45 -321.23 -1.75 -21.50 16 6 C 0.72 25.18 8.38 179.06 1.50 26.68 16 7 O -0.58 -21.73 10.88 -4.03 -0.04 -21.77 16 8 N -0.66 -24.12 5.20 -316.69 -1.65 -25.76 16 9 C 0.07 3.03 6.33 38.22 0.24 3.27 16 10 C -0.05 -1.63 8.69 22.37 0.19 -1.43 16 11 C -0.20 -6.72 10.02 22.33 0.22 -6.50 16 12 C 0.13 4.69 7.29 22.37 0.16 4.86 16 13 F -0.14 -5.11 17.26 44.97 0.78 -4.33 16 14 C -0.26 -11.36 9.14 22.41 0.20 -11.16 16 15 C 0.13 6.18 6.66 22.69 0.15 6.33 16 16 O -0.20 -10.85 9.32 -22.79 -0.21 -11.06 16 17 C -0.42 -22.43 9.49 67.92 0.64 -21.79 16 18 H 0.10 5.02 5.20 -2.91 -0.02 5.01 16 19 C -0.01 -0.46 5.49 84.83 0.47 0.00 16 20 N -0.91 -50.91 13.67 21.61 0.30 -50.62 16 21 Si 1.01 40.63 29.55 68.60 2.03 42.66 16 22 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 23 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 24 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 25 N -0.35 -9.94 12.72 -54.43 -0.69 -10.63 16 26 N -0.46 -9.12 7.35 -48.03 -0.35 -9.47 16 27 H 0.46 5.31 8.96 -213.34 -1.91 3.40 16 28 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 31 H 0.16 5.05 5.91 -2.91 -0.02 5.03 16 32 H 0.42 11.34 8.84 -92.71 -0.82 10.52 16 33 H 0.42 14.84 8.59 -92.71 -0.80 14.05 16 34 H 0.16 5.26 6.19 -2.91 -0.02 5.25 16 35 H 0.16 4.20 8.06 -2.91 -0.02 4.17 16 36 H 0.14 5.94 5.64 -2.91 -0.02 5.92 16 37 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -69.25 329.61 2.19 -67.06 By element: Atomic # 1 Polarization: 42.83 SS G_CDS: -2.33 Total: 40.51 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 6.12 Total: 4.92 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -4.15 Total: -117.98 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.26 Total: -32.83 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 0.78 Total: -4.33 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Total: -69.25 2.19 -67.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755275169.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.903 kcal (2) G-P(sol) polarization free energy of solvation -69.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds