Wall clock time and date at job start Tue Mar 31 2020 13:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53010 * 109.47029 * 2 1 4 4 C 1.50702 * 109.47042 * 240.00612 * 2 1 3 5 5 H 1.08003 * 119.99783 * 241.34422 * 4 2 1 6 6 C 1.37874 * 120.00450 * 61.34667 * 4 2 1 7 7 N 1.31517 * 120.00335 * 193.97715 * 6 4 2 8 8 Si 1.86804 * 119.99908 * 13.97246 * 6 4 2 9 9 H 1.48504 * 109.46939 * 84.55192 * 8 6 4 10 10 H 1.48500 * 109.47183 * 204.54799 * 8 6 4 11 11 H 1.48498 * 109.47346 * 324.55402 * 8 6 4 12 12 C 1.52992 * 109.47353 * 120.00229 * 2 1 3 13 13 N 1.46502 * 109.47281 * 299.99929 * 12 2 1 14 14 C 1.34775 * 120.00381 * 179.97438 * 13 12 2 15 15 O 1.21598 * 119.99516 * 0.02562 * 14 13 12 16 16 C 1.47511 * 120.00321 * 180.02562 * 14 13 12 17 17 C 1.46458 * 120.24800 * 0.02562 * 16 14 13 18 18 C 1.35566 * 119.12642 * 180.02562 * 17 16 14 19 19 C 1.41200 * 119.48421 * 0.27617 * 18 17 16 20 20 N 1.32012 * 132.78619 * 179.72269 * 19 18 17 21 21 N 1.28587 * 109.79799 * 179.97438 * 20 19 18 22 22 C 1.31332 * 110.34008 * 359.42997 * 21 20 19 23 23 S 1.76205 * 126.36911 * 179.97438 * 22 21 20 24 24 N 1.36711 * 107.25596 * 0.64497 * 22 21 20 25 25 C 1.36032 * 133.12978 * 179.28485 * 24 22 21 26 26 H 1.08996 * 109.47124 * 309.36486 * 1 2 3 27 27 H 1.09010 * 109.47069 * 69.36574 * 1 2 3 28 28 H 1.09000 * 109.46785 * 189.36428 * 1 2 3 29 29 H 1.08994 * 109.47008 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.46627 * 300.00128 * 3 2 1 31 31 H 1.09000 * 109.46663 * 60.00508 * 3 2 1 32 32 H 0.96992 * 120.00104 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.47353 * 180.02562 * 12 2 1 34 34 H 1.09004 * 109.47115 * 59.99916 * 12 2 1 35 35 H 0.96998 * 119.99519 * 0.02562 * 13 12 2 36 36 H 1.07999 * 120.43495 * 359.97438 * 17 16 14 37 37 H 1.07997 * 120.26205 * 180.02562 * 18 17 16 38 38 H 1.34503 * 102.99556 * 270.80998 * 23 22 21 39 39 H 1.07996 * 119.80250 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6352 -1.6009 -1.1317 6 6 1.7224 -0.2232 -2.4826 7 7 1.9158 -0.9723 -3.5461 8 14 1.0275 1.5008 -2.6684 9 1 2.1416 2.4819 -2.7083 10 1 0.2469 1.5867 -3.9288 11 1 0.1417 1.8044 -1.5158 12 6 2.0400 -0.7212 1.2491 13 7 1.5518 -0.0307 2.4454 14 6 1.8769 -0.4915 3.6695 15 8 2.5760 -1.4801 3.7809 16 6 1.3848 0.2035 4.8739 17 6 0.5420 1.3944 4.7460 18 6 0.1028 2.0156 5.8680 19 6 0.4703 1.5072 7.1330 20 7 0.2043 1.8942 8.3668 21 7 0.7708 1.0997 9.2042 22 6 1.4208 0.1529 8.5671 23 16 2.3448 -1.1558 9.3008 24 7 1.2598 0.3804 7.2287 25 6 1.7113 -0.2585 6.1159 26 1 -0.3633 0.6518 0.7945 27 1 -0.3634 0.3622 -0.9618 28 1 -0.3633 -1.0140 0.1672 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6974 -0.6298 -4.4269 33 1 3.1301 -0.7209 1.2494 34 1 1.6767 -1.7490 1.2491 35 1 0.9938 0.7577 2.3564 36 1 0.2747 1.7732 3.7706 37 1 -0.5200 2.8949 5.7950 38 1 3.5740 -0.6246 9.4267 39 1 2.3317 -1.1368 6.2157 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837893869.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:40 Heat of formation + Delta-G solvation = 96.073032 kcal Electronic energy + Delta-G solvation = -24001.066622 eV Core-core repulsion = 20458.954985 eV Total energy + Delta-G solvation = -3542.111637 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.94713 -40.09656 -38.06564 -36.87429 -34.67844 -33.54598 -31.96579 -31.40971 -30.01985 -26.81270 -26.50458 -25.25925 -24.41617 -24.20986 -23.31395 -21.14884 -19.52952 -19.33759 -18.36923 -17.58213 -17.30377 -17.04623 -16.29487 -15.90770 -15.44777 -15.33831 -15.21864 -15.00364 -14.24254 -13.76079 -13.54565 -13.07231 -12.87840 -12.82408 -12.67296 -12.35100 -12.19085 -12.17950 -12.12981 -11.52658 -11.43146 -11.24786 -10.59397 -10.49407 -10.30658 -10.20276 -10.07933 -10.02084 -9.26338 -8.93706 -8.89338 -8.81542 -8.73262 -8.56998 -6.24688 -4.23143 -0.09429 0.20430 0.46890 1.53219 1.81585 2.30390 2.52117 3.14637 3.15694 3.19107 3.21423 3.31046 3.54577 3.92846 4.00319 4.20391 4.25538 4.38660 4.79217 4.89396 5.05350 5.25893 5.32966 5.41560 5.59382 5.66108 5.88265 5.88970 6.09474 6.18907 6.29765 6.34068 6.45156 6.49720 6.54199 6.78403 7.06186 7.28031 7.53618 7.59358 7.84049 8.13683 8.33932 8.80117 9.38392 10.88260 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.028629 B = 0.002765 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.784209 B =10123.760933 C =10886.180022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.029 3.971 3 C -0.150 4.150 4 C -0.516 4.516 5 H 0.078 0.922 6 C 0.077 3.923 7 N -0.889 5.889 8 Si 0.885 3.115 9 H -0.285 1.285 10 H -0.304 1.304 11 H -0.249 1.249 12 C 0.140 3.860 13 N -0.707 5.707 14 C 0.561 3.439 15 O -0.535 6.535 16 C -0.142 4.142 17 C -0.056 4.056 18 C -0.084 4.084 19 C 0.223 3.777 20 N -0.283 5.283 21 N -0.192 5.192 22 C 0.106 3.894 23 S 0.033 5.967 24 N -0.380 5.380 25 C 0.134 3.866 26 H 0.021 0.979 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.028 0.972 32 H 0.266 0.734 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.397 0.603 36 H 0.158 0.842 37 H 0.169 0.831 38 H 0.077 0.923 39 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.276 4.890 19.572 20.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 C -0.206 4.206 4 C -0.554 4.554 5 H 0.096 0.904 6 C -0.127 4.127 7 N -0.525 5.525 8 Si 0.717 3.283 9 H -0.213 1.213 10 H -0.233 1.233 11 H -0.175 1.175 12 C 0.019 3.981 13 N -0.357 5.357 14 C 0.345 3.655 15 O -0.414 6.414 16 C -0.149 4.149 17 C -0.081 4.081 18 C -0.106 4.106 19 C -0.028 4.028 20 N -0.131 5.131 21 N -0.037 5.037 22 C -0.262 4.262 23 S 0.183 5.817 24 N -0.061 5.061 25 C 0.009 3.991 26 H 0.040 0.960 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.234 0.766 36 H 0.176 0.824 37 H 0.187 0.813 38 H 0.041 0.959 39 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -2.051 4.157 21.120 21.622 hybrid contribution 0.316 1.911 -1.752 2.612 sum -1.735 6.069 19.368 20.371 Atomic orbital electron populations 1.22325 0.97744 0.99959 1.00110 1.18732 0.92584 0.92270 0.93659 1.22388 1.01357 0.98262 0.98635 1.20677 1.34384 1.12462 0.87889 0.90443 1.24973 0.94609 0.97293 0.95778 1.69940 1.47817 1.35923 0.98801 0.87305 0.79346 0.85490 0.76128 1.21300 1.23300 1.17512 1.21668 0.98971 0.96036 0.81471 1.46218 1.52087 1.31634 1.05803 1.17486 0.81103 0.84128 0.82764 1.90834 1.38153 1.25799 1.86571 1.20827 1.02455 0.98310 0.93293 1.22444 0.93518 0.92330 0.99762 1.20265 1.02140 1.01998 0.86164 1.22658 0.95398 0.87343 0.97360 1.74877 1.21218 1.21561 0.95427 1.74701 1.04887 0.99078 1.24998 1.25838 1.12770 1.06902 0.80732 1.86203 1.07394 1.10063 1.78044 1.44194 1.34113 1.21000 1.06785 1.21870 0.96785 0.97625 0.82822 0.96035 0.92330 0.93217 0.92637 0.93841 0.95315 0.92429 0.91391 0.91226 0.76645 0.82410 0.81333 0.95889 0.79027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 7.53 37.16 0.28 -2.34 16 2 C 0.03 0.56 0.50 -155.66 -0.08 0.49 16 3 C -0.15 -2.71 7.52 37.16 0.28 -2.43 16 4 C -0.52 -12.97 8.62 -34.44 -0.30 -13.26 16 5 H 0.08 2.15 7.99 -52.48 -0.42 1.73 16 6 C 0.08 2.02 5.32 -17.82 -0.09 1.93 16 7 N -0.89 -25.51 13.96 55.43 0.77 -24.74 16 8 Si 0.88 19.85 22.79 -169.99 -3.87 15.98 16 9 H -0.29 -6.41 7.10 56.52 0.40 -6.00 16 10 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.25 -4.97 4.65 56.52 0.26 -4.70 16 12 C 0.14 2.45 4.49 -4.04 -0.02 2.43 16 13 N -0.71 -9.54 4.96 -61.36 -0.30 -9.84 16 14 C 0.56 7.52 7.77 -12.48 -0.10 7.42 16 15 O -0.53 -8.96 16.30 5.28 0.09 -8.88 16 16 C -0.14 -1.46 5.98 -103.45 -0.62 -2.08 16 17 C -0.06 -0.44 9.73 -37.23 -0.36 -0.80 16 18 C -0.08 -0.68 10.09 -39.41 -0.40 -1.08 16 19 C 0.22 2.52 7.91 -155.61 -1.23 1.29 16 20 N -0.28 -3.79 12.27 31.28 0.38 -3.40 16 21 N -0.19 -2.59 12.20 30.72 0.37 -2.22 16 22 C 0.11 1.22 8.45 -88.14 -0.74 0.48 16 23 S 0.03 0.28 26.19 -107.50 -2.82 -2.54 16 24 N -0.38 -4.20 2.96 -62.29 -0.18 -4.38 16 25 C 0.13 1.37 10.48 -16.33 -0.17 1.20 16 26 H 0.02 0.31 7.13 -51.93 -0.37 -0.06 16 27 H 0.06 1.16 4.30 -51.92 -0.22 0.94 16 28 H 0.05 0.90 8.12 -51.93 -0.42 0.48 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.04 0.85 2.25 -51.93 -0.12 0.73 16 31 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 32 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.40 4.39 4.36 -40.82 -0.18 4.21 16 36 H 0.16 0.84 6.58 -52.49 -0.35 0.49 16 37 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.08 0.54 9.07 97.61 0.89 1.42 16 39 H 0.19 1.79 7.58 -52.49 -0.40 1.39 16 LS Contribution 329.91 15.07 4.97 4.97 Total: -1.00 -31.15 329.91 -7.05 -38.20 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -2.91 Total: 3.62 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -3.55 Total: -6.76 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 1.04 Total: -44.59 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.88 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -3.87 Total: 15.98 kcal Atomic # 16 Polarization: 0.28 SS G_CDS: -2.82 Total: -2.54 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.15 -7.05 -38.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837893869.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.269 kcal (2) G-P(sol) polarization free energy of solvation -31.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds