Wall clock time and date at job start Tue Mar 31 2020 13:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50695 * 120.00120 * 2 1 4 4 N 1.46496 * 109.47171 * 126.05756 * 3 2 1 5 5 C 1.46497 * 120.00155 * 276.98999 * 4 3 2 6 6 C 1.50702 * 109.47351 * 269.99914 * 5 4 3 7 7 H 1.07996 * 119.99795 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00069 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00092 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99537 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47536 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46681 * 120.00675 * 10 8 6 13 13 H 1.48501 * 109.47250 * 239.99776 * 10 8 6 14 14 C 1.34783 * 120.00168 * 96.99015 * 4 3 2 15 15 O 1.21508 * 120.00278 * 185.41338 * 14 4 3 16 16 C 1.48153 * 119.99756 * 5.41509 * 14 4 3 17 17 C 1.39789 * 120.91331 * 312.61625 * 16 14 4 18 18 C 1.38303 * 118.99036 * 179.70137 * 17 16 14 19 19 Cl 1.73591 * 119.57162 * 180.27677 * 18 17 16 20 20 N 1.31920 * 120.85835 * 0.30011 * 18 17 16 21 21 C 1.31823 * 122.03428 * 359.97438 * 20 18 17 22 22 C 1.50697 * 119.54332 * 179.97438 * 21 20 18 23 23 C 1.52995 * 117.49866 * 163.62395 * 22 21 20 24 24 C 1.52995 * 117.49853 * 94.99981 * 22 21 20 25 25 C 1.38125 * 120.91103 * 0.02562 * 21 20 18 26 26 H 1.07994 * 120.00530 * 180.02562 * 1 2 3 27 27 H 1.08006 * 119.99644 * 359.97438 * 1 2 3 28 28 H 1.07999 * 119.99247 * 180.02562 * 2 1 3 29 29 H 1.09006 * 109.47372 * 6.05665 * 3 2 1 30 30 H 1.09001 * 109.47194 * 246.05772 * 3 2 1 31 31 H 1.09003 * 109.46880 * 30.00257 * 5 4 3 32 32 H 1.09001 * 109.47566 * 149.99680 * 5 4 3 33 33 H 0.96996 * 119.99496 * 179.97438 * 9 8 6 34 34 H 1.08005 * 120.50392 * 359.97438 * 17 16 14 35 35 H 1.09006 * 115.54859 * 309.32896 * 22 21 20 36 36 H 1.09004 * 117.49885 * 359.97438 * 23 22 21 37 37 H 1.08999 * 117.50183 * 145.01698 * 23 22 21 38 38 H 1.09008 * 117.49790 * 214.97558 * 24 22 21 39 39 H 1.08994 * 117.49934 * 359.97438 * 24 22 21 40 40 H 1.08003 * 120.48282 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 3.0118 1.3215 1.1166 5 6 2.5577 1.6975 2.4577 6 6 2.7062 3.1861 2.6394 7 1 3.0990 3.7916 1.8360 8 6 2.3395 3.7752 3.8308 9 7 1.8606 3.0379 4.8089 10 14 2.5242 5.6204 4.0561 11 1 3.0825 6.2171 2.8161 12 1 1.1953 6.2199 4.3387 13 1 3.4411 5.8910 5.1925 14 6 4.3019 0.9906 0.9100 15 8 5.0663 0.9085 1.8510 16 6 4.7882 0.7271 -0.4644 17 6 4.0759 -0.1076 -1.3305 18 6 4.5629 -0.3211 -2.6072 19 17 3.6867 -1.3491 -3.6975 20 7 5.6850 0.2459 -3.0069 21 6 6.3889 1.0348 -2.2197 22 6 7.6633 1.6529 -2.7343 23 6 8.2382 2.8379 -1.9560 24 6 7.5784 3.0647 -3.3176 25 6 5.9750 1.3020 -0.9292 26 1 -0.5401 -0.9352 0.0004 27 1 -0.5400 0.9354 0.0004 28 1 1.8499 -0.9354 -0.0004 29 1 1.3602 2.1308 0.1084 30 1 2.6064 1.4112 -0.9392 31 1 1.5107 1.4193 2.5781 32 1 3.1595 1.1786 3.2039 33 1 1.6030 3.4524 5.6472 34 1 3.1568 -0.5751 -1.0090 35 1 8.3699 0.9607 -3.1923 36 1 7.6944 3.1709 -1.0719 37 1 9.3233 2.9256 -1.9016 38 1 8.2295 3.3015 -4.1592 39 1 6.6007 3.5463 -3.3296 40 1 6.5569 1.9497 -0.2903 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848119455.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:38 Heat of formation + Delta-G solvation = 33.817818 kcal Electronic energy + Delta-G solvation = -24291.141132 eV Core-core repulsion = 20711.993448 eV Total energy + Delta-G solvation = -3579.147683 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.103 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.13024 -40.47357 -38.28981 -37.51228 -37.44421 -35.26001 -33.99631 -33.74893 -31.96154 -29.73366 -27.30655 -26.29267 -25.79046 -24.34171 -23.12958 -22.43119 -21.46208 -20.19074 -18.72028 -18.63264 -18.32581 -17.46647 -17.08357 -16.85277 -16.55107 -16.24152 -15.93012 -15.74689 -15.42125 -15.20000 -14.51720 -14.45546 -14.18446 -13.45139 -13.34571 -13.12108 -13.02287 -12.95298 -12.88724 -12.62666 -12.46658 -12.33950 -12.27427 -12.22776 -11.73921 -11.65938 -11.41426 -11.40356 -11.02128 -10.66497 -10.64144 -10.39350 -9.97073 -9.64888 -8.25202 -6.39882 -0.48447 -0.35922 0.55920 1.24208 1.36934 1.38706 1.49220 1.55559 2.06291 2.35097 2.38398 2.76135 3.05431 3.05857 3.24009 3.60732 3.62789 3.85372 3.92741 3.99897 4.02785 4.05108 4.11028 4.26800 4.36773 4.44785 4.71269 4.76032 4.81873 4.93371 5.00665 5.01657 5.11840 5.17299 5.17619 5.23675 5.40671 5.64911 5.69912 5.85149 6.00385 6.44200 6.46594 6.67857 7.05737 7.31761 8.82760 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.011316 B = 0.004494 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.702838 B = 6228.483117 C = 8033.471508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.199 4.199 3 C 0.125 3.875 4 N -0.581 5.581 5 C 0.263 3.737 6 C -0.546 4.546 7 H 0.055 0.945 8 C 0.013 3.987 9 N -0.925 5.925 10 Si 0.966 3.034 11 H -0.266 1.266 12 H -0.270 1.270 13 H -0.281 1.281 14 C 0.545 3.455 15 O -0.574 6.574 16 C -0.063 4.063 17 C -0.138 4.138 18 C 0.175 3.825 19 Cl -0.008 7.008 20 N -0.472 5.472 21 C 0.182 3.818 22 C -0.122 4.122 23 C -0.168 4.168 24 C -0.150 4.150 25 C -0.127 4.127 26 H 0.122 0.878 27 H 0.103 0.897 28 H 0.117 0.883 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.030 0.970 32 H 0.004 0.996 33 H 0.268 0.732 34 H 0.171 0.829 35 H 0.140 0.860 36 H 0.090 0.910 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.087 0.913 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.656 -4.339 -19.171 20.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.217 4.217 3 C 0.004 3.996 4 N -0.309 5.309 5 C 0.143 3.857 6 C -0.585 4.585 7 H 0.073 0.927 8 C -0.187 4.187 9 N -0.564 5.564 10 Si 0.791 3.209 11 H -0.191 1.191 12 H -0.195 1.195 13 H -0.207 1.207 14 C 0.333 3.667 15 O -0.455 6.455 16 C -0.074 4.074 17 C -0.159 4.159 18 C 0.011 3.989 19 Cl 0.021 6.979 20 N -0.183 5.183 21 C 0.044 3.956 22 C -0.141 4.141 23 C -0.205 4.205 24 C -0.187 4.187 25 C -0.148 4.148 26 H 0.140 0.860 27 H 0.121 0.879 28 H 0.135 0.865 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.048 0.952 32 H 0.022 0.978 33 H 0.077 0.923 34 H 0.188 0.812 35 H 0.158 0.842 36 H 0.108 0.892 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.105 0.895 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.137 -4.620 -19.418 20.610 hybrid contribution -0.517 0.687 1.536 1.761 sum 4.620 -3.933 -17.882 18.883 Atomic orbital electron populations 1.24115 0.95167 1.03366 0.96160 1.23245 0.97044 0.97628 1.03830 1.21014 0.92330 0.97209 0.89077 1.48140 1.07622 1.63701 1.11486 1.18841 0.94281 0.94533 0.78074 1.21677 1.43369 0.93281 1.00129 0.92721 1.25804 0.94358 1.03388 0.95124 1.70052 1.43568 1.37580 1.05205 0.85385 0.78207 0.79109 0.78229 1.19063 1.19504 1.20666 1.18546 0.82588 0.77566 0.88024 1.90747 1.56211 1.53974 1.44535 1.20279 0.95867 0.97908 0.93374 1.22473 1.02101 0.99222 0.92057 1.21526 0.92195 0.95564 0.89590 1.98410 1.72138 1.63733 1.63616 1.66642 1.05564 1.08523 1.37597 1.20485 0.94755 0.91991 0.88353 1.20878 0.93948 0.92312 1.06968 1.23244 1.02370 0.99172 0.95724 1.23084 1.02906 0.94813 0.97936 1.22227 0.95020 1.00375 0.97160 0.85965 0.87867 0.86538 0.89732 0.88644 0.95164 0.97773 0.92300 0.81233 0.84193 0.89191 0.85509 0.85607 0.89474 0.83233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 14.32 67.77 0.97 -2.46 16 2 C -0.20 -5.29 8.52 25.64 0.22 -5.07 16 3 C 0.13 4.03 5.35 85.63 0.46 4.49 16 4 N -0.58 -24.70 2.44 -833.58 -2.04 -26.74 16 5 C 0.26 13.91 5.21 85.63 0.45 14.36 16 6 C -0.55 -30.68 9.39 25.60 0.24 -30.44 16 7 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 8 C 0.01 0.72 5.46 84.65 0.46 1.18 16 9 N -0.92 -54.63 13.29 21.45 0.28 -54.34 16 10 Si 0.97 43.76 29.54 68.60 2.03 45.78 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 14 C 0.55 23.41 7.31 86.88 0.63 24.05 16 15 O -0.57 -29.88 16.58 -3.74 -0.06 -29.95 16 16 C -0.06 -2.10 5.02 -19.88 -0.10 -2.19 16 17 C -0.14 -3.79 7.35 22.66 0.17 -3.63 16 18 C 0.18 4.52 7.27 84.70 0.62 5.14 16 19 Cl -0.01 -0.16 29.10 -2.72 -0.08 -0.24 16 20 N -0.47 -12.57 10.22 -175.01 -1.79 -14.36 16 21 C 0.18 4.67 6.46 42.53 0.27 4.94 16 22 C -0.12 -2.33 6.21 -11.54 -0.07 -2.40 16 23 C -0.17 -2.77 9.79 30.59 0.30 -2.47 16 24 C -0.15 -2.37 10.23 30.59 0.31 -2.06 16 25 C -0.13 -3.79 9.08 22.63 0.21 -3.59 16 26 H 0.12 2.21 8.06 -2.91 -0.02 2.19 16 27 H 0.10 2.32 7.85 -2.91 -0.02 2.30 16 28 H 0.12 2.89 6.55 -2.91 -0.02 2.87 16 29 H 0.08 2.79 7.78 -2.38 -0.02 2.77 16 30 H 0.10 2.70 5.25 -2.39 -0.01 2.69 16 31 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 32 H 0.00 0.25 7.35 -2.39 -0.02 0.24 16 33 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 34 H 0.17 4.24 4.12 -2.91 -0.01 4.22 16 35 H 0.14 2.27 8.14 -2.38 -0.02 2.25 16 36 H 0.09 1.75 6.39 -2.38 -0.02 1.74 16 37 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.13 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.15 4.44 6.25 -2.91 -0.02 4.43 16 Total: -1.00 -69.55 355.83 4.55 -65.00 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 1.07 Total: 15.01 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 5.13 Total: -0.16 kcal Atomic # 7 Polarization: -91.90 SS G_CDS: -3.54 Total: -95.44 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.06 Total: -29.95 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.08 Total: -0.24 kcal Total: -69.55 4.55 -65.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848119455.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.815 kcal (2) G-P(sol) polarization free energy of solvation -69.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds