Wall clock time and date at job start Tue Mar 31 2020 13:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46931 * 2 1 4 4 H 1.09007 * 109.47034 * 305.00289 * 3 2 1 5 5 C 1.50697 * 109.47205 * 185.00418 * 3 2 1 6 6 H 1.07999 * 119.99846 * 240.00364 * 5 3 2 7 7 C 1.37882 * 120.00015 * 59.99830 * 5 3 2 8 8 N 1.31510 * 119.99960 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99862 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47006 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47236 * 120.00007 * 9 7 5 12 12 H 1.48496 * 109.47057 * 240.00027 * 9 7 5 13 13 O 1.45196 * 109.47064 * 65.00190 * 3 2 1 14 14 C 1.34229 * 116.99841 * 269.99797 * 13 3 2 15 15 O 1.20820 * 120.00569 * 0.02562 * 14 13 3 16 16 C 1.50708 * 119.99602 * 180.02562 * 14 13 3 17 17 H 1.08996 * 109.46993 * 299.99501 * 16 14 13 18 18 C 1.52997 * 109.47141 * 60.00329 * 16 14 13 19 19 N 1.46506 * 109.46796 * 180.02562 * 16 14 13 20 20 C 1.34947 * 126.03209 * 274.99606 * 19 16 14 21 21 C 1.35318 * 107.74312 * 179.97438 * 20 19 16 22 22 C 1.39871 * 107.91885 * 0.02562 * 21 20 19 23 23 C 1.50705 * 125.89765 * 179.97438 * 22 21 20 24 24 F 1.39899 * 109.47389 * 90.00020 * 23 22 21 25 25 F 1.39902 * 109.46875 * 210.00269 * 23 22 21 26 26 F 1.39897 * 109.46953 * 329.99715 * 23 22 21 27 27 N 1.30835 * 108.20201 * 359.73895 * 22 21 20 28 28 H 1.08995 * 109.46798 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46834 * 299.99986 * 1 2 3 30 30 H 1.08996 * 109.47385 * 60.00135 * 1 2 3 31 31 H 1.08996 * 109.47257 * 240.00398 * 2 1 3 32 32 H 1.08996 * 109.47385 * 119.99865 * 2 1 3 33 33 H 0.97000 * 120.00300 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.47153 * 299.99670 * 18 16 14 35 35 H 1.09001 * 109.46832 * 179.97438 * 18 16 14 36 36 H 1.09004 * 109.47261 * 59.99842 * 18 16 14 37 37 H 1.07994 * 126.13332 * 359.96608 * 20 19 16 38 38 H 1.07995 * 126.04244 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8890 0.6522 7 6 4.1432 0.8785 -1.2281 8 7 3.4061 0.3376 -2.1734 9 14 6.0049 0.8803 -1.3814 10 1 6.5987 1.5444 -0.1934 11 1 6.4962 -0.5188 -1.4629 12 1 6.3998 1.6159 -2.6094 13 8 1.6559 2.0917 1.2407 14 6 0.4727 2.7254 1.2559 15 8 -0.2193 2.7370 0.2656 16 6 0.0075 3.4226 2.5085 17 1 -0.0712 2.6985 3.3194 18 6 1.0139 4.5096 2.8910 19 7 -1.3032 4.0321 2.2699 20 6 -1.5268 5.2450 1.7223 21 6 -2.8656 5.4358 1.6753 22 6 -3.4812 4.3009 2.2132 23 6 -4.9658 4.0854 2.3572 24 9 -5.4619 3.4703 1.2027 25 9 -5.2130 3.2669 3.4646 26 9 -5.6007 5.3188 2.5380 27 7 -2.5458 3.4566 2.5651 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8291 -0.0608 -2.9501 34 1 1.9889 4.0557 3.0686 35 1 0.6772 5.0140 3.7966 36 1 1.0925 5.2336 2.0799 37 1 -0.7725 5.9391 1.3825 38 1 -3.3698 6.3100 1.2906 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870310410.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:59 Heat of formation + Delta-G solvation = -177.206077 kcal Electronic energy + Delta-G solvation = -27465.358586 eV Core-core repulsion = 22894.494315 eV Total energy + Delta-G solvation = -4570.864271 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.25747 -48.77516 -48.76367 -42.76543 -41.39983 -37.90720 -36.08869 -35.48177 -33.40744 -31.89151 -31.25834 -29.38953 -27.61121 -26.24147 -25.08943 -23.39610 -22.26417 -21.97845 -21.14763 -19.64592 -19.43821 -19.20973 -18.80800 -18.64687 -17.96835 -17.55878 -16.88424 -16.45413 -15.80861 -15.61968 -15.39958 -15.26226 -15.18042 -14.93353 -14.90309 -14.89437 -14.81904 -14.46677 -14.16020 -13.94170 -13.56390 -13.41944 -13.27618 -13.20102 -13.13338 -12.86789 -12.72092 -12.60512 -12.17366 -12.13526 -11.83067 -11.63836 -11.42955 -10.90745 -10.86993 -10.56364 -9.95618 -8.28792 -6.45887 0.28841 0.71463 1.13464 1.26098 1.42931 1.43850 1.56563 1.61405 1.97719 2.39448 2.53048 2.85218 3.01747 3.26648 3.39446 3.62309 3.71288 3.79817 4.18003 4.28651 4.30936 4.42415 4.46617 4.56676 4.63390 4.66775 4.76198 4.99475 5.08935 5.10284 5.12792 5.27488 5.49390 5.61107 5.67447 5.90645 6.05146 6.15197 6.57471 6.83606 7.25319 8.78087 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.025402 B = 0.003062 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.010490 B = 9141.708809 C = 9664.591243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.131 4.131 3 C 0.229 3.771 4 H 0.007 0.993 5 C -0.545 4.545 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.916 5.916 9 Si 0.981 3.019 10 H -0.259 1.259 11 H -0.276 1.276 12 H -0.278 1.278 13 O -0.349 6.349 14 C 0.435 3.565 15 O -0.532 6.532 16 C 0.171 3.829 17 H 0.154 0.846 18 C -0.150 4.150 19 N -0.343 5.343 20 C 0.082 3.918 21 C -0.234 4.234 22 C -0.031 4.031 23 C 0.563 3.437 24 F -0.174 7.174 25 F -0.173 7.173 26 F -0.156 7.156 27 N -0.271 5.271 28 H 0.058 0.942 29 H 0.031 0.969 30 H 0.031 0.969 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.270 0.730 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.219 0.781 38 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.435 11.652 11.375 18.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.169 4.169 3 C 0.176 3.824 4 H 0.025 0.975 5 C -0.582 4.582 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.804 3.196 10 H -0.183 1.183 11 H -0.201 1.201 12 H -0.204 1.204 13 O -0.265 6.265 14 C 0.277 3.723 15 O -0.422 6.422 16 C 0.068 3.932 17 H 0.171 0.829 18 C -0.208 4.208 19 N -0.127 5.127 20 C -0.062 4.062 21 C -0.262 4.262 22 C -0.198 4.198 23 C 0.507 3.493 24 F -0.156 7.156 25 F -0.155 7.155 26 F -0.137 7.137 27 N -0.095 5.095 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.099 0.901 37 H 0.236 0.764 38 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -9.246 10.331 11.416 17.960 hybrid contribution 0.131 0.137 -1.145 1.161 sum -9.115 10.468 10.272 17.268 Atomic orbital electron populations 1.21687 0.96769 1.00407 0.99628 1.21901 0.93870 0.98556 1.02587 1.20404 0.94742 0.88930 0.78343 0.97481 1.21345 0.90114 1.39887 1.06897 0.90873 1.25810 1.04159 0.93907 0.94434 1.70023 1.37447 1.37992 1.09945 0.85158 0.77750 0.78167 0.78497 1.18276 1.20128 1.20376 1.86446 1.34710 1.62556 1.42742 1.24274 0.80368 0.77038 0.90583 1.90678 1.55617 1.58771 1.37133 1.21087 0.79493 0.99258 0.93378 0.82884 1.22225 0.97688 0.96299 1.04558 1.48511 1.04041 1.13287 1.46831 1.23252 0.98720 0.88410 0.95859 1.21568 0.92647 1.01101 1.10916 1.22270 0.93185 0.97491 1.06832 1.16767 0.84501 0.74218 0.73854 1.93241 1.88877 1.83304 1.50161 1.93219 1.95139 1.73310 1.53811 1.93228 1.83194 1.42299 1.95003 1.77262 0.89188 1.20602 1.22404 0.92261 0.94945 0.94964 0.89496 0.93205 0.92106 0.87481 0.86920 0.90113 0.76437 0.79290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.70 8.57 71.98 0.62 -5.08 16 2 C -0.13 -6.46 5.49 30.60 0.17 -6.30 16 3 C 0.23 11.81 2.25 29.85 0.07 11.87 16 4 H 0.01 0.43 7.16 -2.38 -0.02 0.42 16 5 C -0.54 -29.08 8.90 25.60 0.23 -28.86 16 6 H 0.07 3.76 7.81 -2.91 -0.02 3.74 16 7 C 0.02 0.88 5.29 84.66 0.45 1.33 16 8 N -0.92 -51.06 11.29 21.45 0.24 -50.82 16 9 Si 0.98 41.00 29.54 68.60 2.03 43.02 16 10 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 11 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 12 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 13 O -0.35 -15.08 9.71 -51.41 -0.50 -15.57 16 14 C 0.44 16.46 5.78 71.24 0.41 16.87 16 15 O -0.53 -24.04 13.56 21.98 0.30 -23.74 16 16 C 0.17 4.38 3.83 44.25 0.17 4.55 16 17 H 0.15 3.46 8.14 -2.39 -0.02 3.44 16 18 C -0.15 -2.47 8.77 71.98 0.63 -1.84 16 19 N -0.34 -9.24 3.02 -331.05 -1.00 -10.24 16 20 C 0.08 1.75 10.58 83.54 0.88 2.64 16 21 C -0.23 -5.04 10.43 21.99 0.23 -4.81 16 22 C -0.03 -0.84 6.56 43.10 0.28 -0.56 16 23 C 0.56 13.91 3.55 71.24 0.25 14.16 16 24 F -0.17 -4.69 17.30 44.97 0.78 -3.91 16 25 F -0.17 -4.51 17.25 44.97 0.78 -3.74 16 26 F -0.16 -3.25 17.04 44.97 0.77 -2.49 16 27 N -0.27 -8.41 12.51 -47.38 -0.59 -9.00 16 28 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.03 1.40 6.06 -2.38 -0.01 1.38 16 30 H 0.03 1.54 7.80 -2.39 -0.02 1.52 16 31 H 0.09 4.72 5.95 -2.39 -0.01 4.70 16 32 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 34 H 0.11 1.81 8.11 -2.39 -0.02 1.79 16 35 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.08 1.23 7.16 -2.38 -0.02 1.22 16 37 H 0.22 2.94 7.26 -2.91 -0.02 2.92 16 38 H 0.19 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -68.58 338.76 8.29 -60.29 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 1.10 Total: 12.21 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 4.39 Total: 3.98 kcal Atomic # 7 Polarization: -68.71 SS G_CDS: -1.35 Total: -70.06 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -0.20 Total: -39.32 kcal Atomic # 9 Polarization: -12.45 SS G_CDS: 2.32 Total: -10.13 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.02 kcal Total: -68.58 8.29 -60.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870310410.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.912 kcal (2) G-P(sol) polarization free energy of solvation -68.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds