Wall clock time and date at job start Tue Mar 31 2020 12:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33422 * 122.71474 * 2 1 4 4 S 1.76175 * 108.06543 * 179.97438 * 3 2 1 5 5 C 1.70968 * 90.34027 * 0.27447 * 4 3 2 6 6 N 1.38924 * 124.94279 * 179.84223 * 5 4 3 7 7 C 1.46499 * 119.99679 * 180.02562 * 6 5 4 8 8 C 1.34778 * 119.99698 * 359.97438 * 6 5 4 9 9 O 1.21605 * 120.00573 * 6.52140 * 8 6 5 10 10 C 1.47398 * 119.99779 * 186.51560 * 8 6 5 11 11 C 1.41312 * 126.41445 * 7.91696 * 10 8 6 12 12 N 1.30447 * 108.01832 * 179.81792 * 11 10 8 13 13 N 1.39933 * 108.90365 * 0.44411 * 12 11 10 14 14 C 1.46505 * 125.74722 * 179.75022 * 13 12 11 15 15 C 1.50698 * 109.47013 * 269.95711 * 14 13 12 16 16 H 1.08003 * 119.99978 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00165 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99621 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00190 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47275 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47108 * 119.99659 * 19 17 15 22 22 H 1.48496 * 109.47146 * 239.99770 * 19 17 15 23 23 C 1.34261 * 108.49753 * 359.71302 * 13 12 11 24 24 C 1.50699 * 126.29373 * 179.97438 * 23 13 12 25 25 N 1.29635 * 110.11232 * 359.84270 * 5 4 3 26 26 H 1.09004 * 109.47099 * 269.73582 * 1 2 3 27 27 H 1.08998 * 109.47408 * 149.72844 * 1 2 3 28 28 H 1.09007 * 109.46799 * 29.73127 * 1 2 3 29 29 H 1.08004 * 125.97090 * 0.03810 * 3 2 1 30 30 H 1.09000 * 109.47135 * 95.87198 * 7 6 5 31 31 H 1.09002 * 109.46838 * 215.86597 * 7 6 5 32 32 H 1.08992 * 109.47139 * 335.86981 * 7 6 5 33 33 H 1.07997 * 125.98945 * 359.97438 * 11 10 8 34 34 H 1.08997 * 109.47307 * 29.95949 * 14 13 12 35 35 H 1.09007 * 109.46558 * 149.95890 * 14 13 12 36 36 H 0.97001 * 120.00165 * 180.02562 * 18 17 15 37 37 H 1.09001 * 109.46964 * 270.00117 * 24 23 13 38 38 H 1.09002 * 109.47154 * 29.99940 * 24 23 13 39 39 H 1.09004 * 109.47036 * 150.00568 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2281 1.1226 0.0000 4 16 3.9326 0.6770 0.0007 5 6 3.5101 -0.9796 -0.0072 6 7 4.4169 -2.0320 -0.0135 7 6 3.9338 -3.4151 -0.0206 8 6 5.7410 -1.7806 -0.0142 9 8 6.1434 -0.6399 0.1103 10 6 6.7014 -2.8885 -0.1657 11 6 6.3904 -4.2321 -0.4737 12 7 7.5077 -4.9034 -0.5245 13 7 8.5704 -4.0369 -0.2455 14 6 9.9872 -4.4069 -0.2000 15 6 10.3514 -4.8289 1.2001 16 1 9.6023 -4.8226 1.9781 17 6 11.6409 -5.2232 1.4879 18 7 12.5529 -5.2314 0.5404 19 14 12.0925 -5.7456 3.2235 20 1 10.8955 -5.6485 4.0970 21 1 12.5801 -7.1482 3.2072 22 1 13.1607 -4.8562 3.7460 23 6 8.0728 -2.8091 -0.0275 24 6 8.8655 -1.5718 0.3072 25 7 2.2204 -1.1107 -0.0065 26 1 -0.3633 -0.0047 1.0277 27 1 -0.3634 -0.8875 -0.5180 28 1 -0.3633 0.8925 -0.5097 29 1 1.8356 2.1287 0.0006 30 1 3.9125 -3.7873 -1.0448 31 1 4.6007 -4.0359 0.5777 32 1 2.9289 -3.4511 0.4001 33 1 5.4013 -4.6324 -0.6404 34 1 10.1693 -5.2329 -0.8874 35 1 10.5958 -3.5508 -0.4914 36 1 13.4600 -5.5091 0.7427 37 1 8.9676 -1.4875 1.3891 38 1 9.8541 -1.6398 -0.1468 39 1 8.3480 -0.6934 -0.0785 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888275783.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:17 Heat of formation + Delta-G solvation = 100.944348 kcal Electronic energy + Delta-G solvation = -23958.984813 eV Core-core repulsion = 20417.084412 eV Total energy + Delta-G solvation = -3541.900401 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.26687 -40.14469 -39.07479 -35.92989 -34.00315 -32.31201 -31.76646 -31.05412 -28.17652 -27.71985 -27.32769 -26.75769 -24.56702 -23.40098 -21.70087 -20.69649 -19.50738 -18.78173 -17.89846 -16.92645 -16.59587 -16.54130 -16.19308 -15.48652 -14.79462 -14.69691 -14.53849 -14.20627 -13.82723 -13.64930 -13.17306 -13.09512 -12.81420 -12.71786 -12.62524 -12.53966 -12.34045 -12.02449 -11.68785 -11.58272 -11.25476 -11.14572 -10.96188 -10.43712 -10.35440 -10.32802 -9.99149 -9.72692 -9.67234 -9.13492 -8.78020 -8.73815 -8.30217 -7.95887 -6.40474 -4.48741 0.76309 1.17013 1.85400 1.94958 2.51859 2.56432 2.84083 3.12686 3.18148 3.21492 3.29545 3.55832 4.18616 4.30279 4.77195 4.95614 5.00442 5.03255 5.11617 5.23864 5.26057 5.30353 5.43313 5.51852 5.57942 5.62310 5.65670 5.72859 5.97078 6.01339 6.28797 6.32037 6.41055 6.64289 6.80743 6.88097 7.01763 7.45752 7.64029 7.68971 7.75499 7.97925 8.22377 8.56485 9.18730 10.67841 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.028105 B = 0.002835 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.015072 B = 9873.802808 C =10147.845451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.090 3.910 3 C -0.334 4.334 4 S 0.232 5.768 5 C 0.263 3.737 6 N -0.517 5.517 7 C 0.069 3.931 8 C 0.603 3.397 9 O -0.519 6.519 10 C -0.332 4.332 11 C 0.046 3.954 12 N -0.290 5.290 13 N -0.310 5.310 14 C 0.249 3.751 15 C -0.541 4.541 16 H 0.066 0.934 17 C 0.068 3.932 18 N -0.888 5.888 19 Si 0.908 3.092 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.279 1.279 23 C 0.178 3.822 24 C -0.098 4.098 25 N -0.522 5.522 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.170 0.830 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.195 0.805 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.270 0.730 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.093 9.778 -1.905 20.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.043 4.043 3 C -0.475 4.475 4 S 0.484 5.516 5 C -0.103 4.103 6 N -0.245 5.245 7 C -0.075 4.075 8 C 0.397 3.603 9 O -0.397 6.397 10 C -0.348 4.348 11 C -0.141 4.141 12 N -0.110 5.110 13 N -0.086 5.086 14 C 0.132 3.868 15 C -0.580 4.580 16 H 0.084 0.916 17 C -0.136 4.136 18 N -0.525 5.525 19 Si 0.735 3.265 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.205 1.205 23 C 0.039 3.961 24 C -0.156 4.156 25 N -0.246 5.246 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.188 0.812 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.211 0.789 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.109 9.053 -2.094 18.597 hybrid contribution -1.037 0.123 1.016 1.457 sum -17.146 9.176 -1.079 19.477 Atomic orbital electron populations 1.20320 0.87527 1.02990 1.02658 1.19778 0.97472 0.86161 1.00851 1.27154 0.98994 1.03579 1.17731 1.84975 1.02019 0.96530 1.68031 1.23436 0.90561 0.94210 1.02123 1.44705 1.04149 1.05696 1.69912 1.22554 1.02258 0.79627 1.03051 1.17643 0.79609 0.88533 0.74508 1.90630 1.76496 1.22460 1.50072 1.19202 0.91967 0.94270 1.29357 1.24683 0.98507 0.91264 0.99673 1.77224 0.93713 1.17855 1.22168 1.49484 1.09211 1.04063 1.45793 1.19933 0.68507 0.98533 0.99794 1.21258 0.96006 1.46973 0.93738 0.91564 1.24925 0.95717 0.94657 0.98327 1.69916 1.03500 1.46390 1.32744 0.86259 0.78638 0.78473 0.83113 1.19509 1.20516 1.20504 1.21468 0.92228 0.89173 0.93231 1.20656 0.99222 0.92496 1.03268 1.66152 1.02341 1.32411 1.23704 0.90907 0.90863 0.90920 0.81219 0.90915 0.88573 0.89183 0.78889 0.92299 0.92395 0.92075 0.89549 0.90406 0.88524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.31 36.01 0.37 -0.25 16 2 C 0.09 1.07 6.74 -84.20 -0.57 0.50 16 3 C -0.33 -3.73 11.11 29.05 0.32 -3.41 16 4 S 0.23 3.09 20.24 -107.50 -2.18 0.91 16 5 C 0.26 3.83 7.69 -87.42 -0.67 3.16 16 6 N -0.52 -7.44 3.07 -126.04 -0.39 -7.83 16 7 C 0.07 0.76 8.52 59.85 0.51 1.27 16 8 C 0.60 9.86 7.61 -12.53 -0.10 9.77 16 9 O -0.52 -9.02 12.32 5.27 0.06 -8.95 16 10 C -0.33 -5.78 5.92 -105.06 -0.62 -6.40 16 11 C 0.05 0.75 9.87 -16.97 -0.17 0.58 16 12 N -0.29 -5.93 12.50 30.87 0.39 -5.54 16 13 N -0.31 -6.66 3.56 -57.77 -0.21 -6.86 16 14 C 0.25 5.95 5.97 -5.19 -0.03 5.92 16 15 C -0.54 -14.09 9.39 -34.44 -0.32 -14.41 16 16 H 0.07 1.77 7.81 -52.48 -0.41 1.36 16 17 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -23.96 13.29 55.43 0.74 -23.22 16 19 Si 0.91 20.31 29.54 -169.99 -5.02 15.29 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 C 0.18 3.40 7.00 -81.59 -0.57 2.83 16 24 C -0.10 -1.65 9.66 36.01 0.35 -1.30 16 25 N -0.52 -7.27 9.71 -11.29 -0.11 -7.38 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 29 H 0.17 1.41 8.06 -52.48 -0.42 0.99 16 30 H 0.07 0.69 7.27 -51.93 -0.38 0.31 16 31 H 0.10 1.03 5.43 -51.93 -0.28 0.75 16 32 H 0.09 0.95 7.46 -51.93 -0.39 0.56 16 33 H 0.19 2.34 4.52 -52.49 -0.24 2.10 16 34 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.06 1.37 7.02 -51.92 -0.36 1.01 16 36 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 37 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.08 1.27 7.05 -51.93 -0.37 0.91 16 39 H 0.10 1.52 6.37 -51.93 -0.33 1.19 16 LS Contribution 340.76 15.07 5.14 5.14 Total: -1.00 -30.05 340.76 -7.60 -37.65 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -4.43 Total: 0.87 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -1.60 Total: -0.06 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: 0.42 Total: -50.84 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.06 Total: -8.95 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -2.18 Total: 0.91 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.05 -7.60 -37.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888275783.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.594 kcal (2) G-P(sol) polarization free energy of solvation -30.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds