Wall clock time and date at job start Tue Mar 31 2020 12:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33422 * 122.71474 * 2 1 4 4 S 1.76175 * 108.06543 * 179.97438 * 3 2 1 5 5 C 1.70968 * 90.34027 * 0.27447 * 4 3 2 6 6 N 1.38924 * 124.94279 * 179.84223 * 5 4 3 7 7 C 1.46499 * 119.99679 * 180.02562 * 6 5 4 8 8 C 1.34778 * 119.99698 * 359.97438 * 6 5 4 9 9 O 1.21605 * 120.00573 * 6.52140 * 8 6 5 10 10 C 1.47398 * 119.99779 * 186.51560 * 8 6 5 11 11 C 1.41312 * 126.41445 * 7.91696 * 10 8 6 12 12 N 1.30447 * 108.01832 * 179.81792 * 11 10 8 13 13 N 1.39933 * 108.90365 * 0.44411 * 12 11 10 14 14 C 1.46505 * 125.74722 * 179.75022 * 13 12 11 15 15 C 1.50698 * 109.47013 * 269.95711 * 14 13 12 16 16 H 1.08003 * 119.99978 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00165 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99621 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00190 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47275 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47108 * 119.99659 * 19 17 15 22 22 H 1.48496 * 109.47146 * 239.99770 * 19 17 15 23 23 C 1.34261 * 108.49753 * 359.71302 * 13 12 11 24 24 C 1.50699 * 126.29373 * 179.97438 * 23 13 12 25 25 N 1.29635 * 110.11232 * 359.84270 * 5 4 3 26 26 H 1.09004 * 109.47099 * 269.73582 * 1 2 3 27 27 H 1.08998 * 109.47408 * 149.72844 * 1 2 3 28 28 H 1.09007 * 109.46799 * 29.73127 * 1 2 3 29 29 H 1.08004 * 125.97090 * 0.03810 * 3 2 1 30 30 H 1.09000 * 109.47135 * 95.87198 * 7 6 5 31 31 H 1.09002 * 109.46838 * 215.86597 * 7 6 5 32 32 H 1.08992 * 109.47139 * 335.86981 * 7 6 5 33 33 H 1.07997 * 125.98945 * 359.97438 * 11 10 8 34 34 H 1.08997 * 109.47307 * 29.95949 * 14 13 12 35 35 H 1.09007 * 109.46558 * 149.95890 * 14 13 12 36 36 H 0.97001 * 120.00165 * 180.02562 * 18 17 15 37 37 H 1.09001 * 109.46964 * 270.00117 * 24 23 13 38 38 H 1.09002 * 109.47154 * 29.99940 * 24 23 13 39 39 H 1.09004 * 109.47036 * 150.00568 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2281 1.1226 0.0000 4 16 3.9326 0.6770 0.0007 5 6 3.5101 -0.9796 -0.0072 6 7 4.4169 -2.0320 -0.0135 7 6 3.9338 -3.4151 -0.0206 8 6 5.7410 -1.7806 -0.0142 9 8 6.1434 -0.6399 0.1103 10 6 6.7014 -2.8885 -0.1657 11 6 6.3904 -4.2321 -0.4737 12 7 7.5077 -4.9034 -0.5245 13 7 8.5704 -4.0369 -0.2455 14 6 9.9872 -4.4069 -0.2000 15 6 10.3514 -4.8289 1.2001 16 1 9.6023 -4.8226 1.9781 17 6 11.6409 -5.2232 1.4879 18 7 12.5529 -5.2314 0.5404 19 14 12.0925 -5.7456 3.2235 20 1 10.8955 -5.6485 4.0970 21 1 12.5801 -7.1482 3.2072 22 1 13.1607 -4.8562 3.7460 23 6 8.0728 -2.8091 -0.0275 24 6 8.8655 -1.5718 0.3072 25 7 2.2204 -1.1107 -0.0065 26 1 -0.3633 -0.0047 1.0277 27 1 -0.3634 -0.8875 -0.5180 28 1 -0.3633 0.8925 -0.5097 29 1 1.8356 2.1287 0.0006 30 1 3.9125 -3.7873 -1.0448 31 1 4.6007 -4.0359 0.5777 32 1 2.9289 -3.4511 0.4001 33 1 5.4013 -4.6324 -0.6404 34 1 10.1693 -5.2329 -0.8874 35 1 10.5958 -3.5508 -0.4914 36 1 13.4600 -5.5091 0.7427 37 1 8.9676 -1.4875 1.3891 38 1 9.8541 -1.6398 -0.1468 39 1 8.3480 -0.6934 -0.0785 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888275783.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:16 Heat of formation + Delta-G solvation = 83.499090 kcal Electronic energy + Delta-G solvation = -23959.741296 eV Core-core repulsion = 20417.084412 eV Total energy + Delta-G solvation = -3542.656884 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.64744 -41.29140 -40.19832 -37.06974 -35.81878 -33.94690 -33.02913 -32.23656 -29.58874 -28.74911 -28.34999 -28.23734 -25.90506 -25.01626 -22.96449 -21.97609 -20.56207 -20.17814 -19.07304 -18.82655 -17.88952 -17.61568 -17.32807 -16.91271 -16.49604 -16.05489 -15.68560 -15.33110 -15.19391 -14.75251 -14.40836 -14.23530 -14.13653 -14.01600 -13.83365 -13.62753 -13.40141 -13.26807 -13.15842 -13.00908 -12.77300 -12.69006 -12.31639 -12.20523 -11.84783 -11.76606 -11.30621 -10.95151 -10.76890 -10.71964 -10.32568 -10.14907 -9.70951 -9.03364 -8.38943 -6.54855 -0.27064 0.17792 0.52624 0.98618 1.18072 1.36345 1.36697 1.39650 1.50544 1.71399 1.81541 2.28082 2.32235 2.93958 3.40674 3.52641 3.64908 3.86261 4.09319 4.14034 4.30556 4.38156 4.45756 4.49388 4.58781 4.73796 4.75778 4.83326 4.85570 4.89394 4.93775 5.00510 5.11361 5.17046 5.46922 5.48469 5.53186 5.73264 5.78565 5.96341 6.53612 6.66037 6.75034 6.85265 7.16452 8.69319 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.028105 B = 0.002835 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.015072 B = 9873.802808 C =10147.845451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.070 3.930 3 C -0.315 4.315 4 S 0.207 5.793 5 C 0.238 3.762 6 N -0.516 5.516 7 C 0.062 3.938 8 C 0.604 3.396 9 O -0.534 6.534 10 C -0.330 4.330 11 C 0.067 3.933 12 N -0.330 5.330 13 N -0.334 5.334 14 C 0.265 3.735 15 C -0.554 4.554 16 H 0.053 0.947 17 C 0.025 3.975 18 N -0.916 5.916 19 Si 0.971 3.029 20 H -0.272 1.272 21 H -0.275 1.275 22 H -0.269 1.269 23 C 0.163 3.837 24 C -0.093 4.093 25 N -0.526 5.526 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.201 0.799 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.238 0.762 34 H 0.034 0.966 35 H 0.054 0.946 36 H 0.274 0.726 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.400 10.556 -1.296 23.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.062 4.062 3 C -0.455 4.455 4 S 0.458 5.542 5 C -0.127 4.127 6 N -0.243 5.243 7 C -0.080 4.080 8 C 0.397 3.603 9 O -0.412 6.412 10 C -0.345 4.345 11 C -0.119 4.119 12 N -0.149 5.149 13 N -0.110 5.110 14 C 0.147 3.853 15 C -0.592 4.592 16 H 0.071 0.929 17 C -0.177 4.177 18 N -0.554 5.554 19 Si 0.795 3.205 20 H -0.196 1.196 21 H -0.200 1.200 22 H -0.194 1.194 23 C 0.026 3.974 24 C -0.151 4.151 25 N -0.251 5.251 26 H 0.101 0.899 27 H 0.091 0.909 28 H 0.114 0.886 29 H 0.218 0.782 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.253 0.747 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.460 9.837 -1.491 20.970 hybrid contribution -0.533 -0.015 0.791 0.954 sum -18.993 9.822 -0.700 21.394 Atomic orbital electron populations 1.20428 0.84884 1.04151 1.03669 1.20417 0.99162 0.85754 1.00828 1.27460 0.97166 1.04922 1.15928 1.85019 1.04303 0.96685 1.68145 1.23580 0.90897 0.94412 1.03820 1.44632 1.03476 1.06862 1.69342 1.22744 1.02607 0.78193 1.04473 1.17419 0.80265 0.87884 0.74743 1.90625 1.77172 1.22780 1.50668 1.19372 0.91581 0.95084 1.28465 1.25404 0.99089 0.90583 0.96851 1.77183 0.94470 1.18959 1.24254 1.49206 1.08598 1.05087 1.48099 1.19446 0.70377 0.97310 0.98181 1.21402 0.96045 1.47356 0.94400 0.92853 1.25703 0.95554 0.94463 1.01961 1.69994 1.03930 1.46967 1.34514 0.85309 0.78308 0.78301 0.78604 1.19647 1.19996 1.19446 1.21937 0.93400 0.88971 0.93121 1.20667 0.99017 0.92022 1.03353 1.66191 1.02137 1.33579 1.23177 0.89870 0.90930 0.88601 0.78177 0.88874 0.88280 0.88409 0.74689 0.94817 0.92824 0.91657 0.89353 0.90581 0.87497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.31 71.24 0.73 -0.22 16 2 C 0.07 1.48 6.74 41.44 0.28 1.76 16 3 C -0.31 -6.18 11.11 66.73 0.74 -5.44 16 4 S 0.21 5.25 20.24 -56.49 -1.14 4.11 16 5 C 0.24 6.61 7.69 179.23 1.38 7.99 16 6 N -0.52 -14.10 3.07 -670.93 -2.06 -16.16 16 7 C 0.06 1.24 8.52 127.77 1.09 2.33 16 8 C 0.60 19.24 7.61 86.66 0.66 19.89 16 9 O -0.53 -18.32 12.32 -4.05 -0.05 -18.37 16 10 C -0.33 -11.27 5.92 -20.15 -0.12 -11.39 16 11 C 0.07 2.15 9.87 85.65 0.85 2.99 16 12 N -0.33 -13.54 12.50 -56.26 -0.70 -14.25 16 13 N -0.33 -14.72 3.56 -336.67 -1.20 -15.92 16 14 C 0.27 13.18 5.97 85.63 0.51 13.69 16 15 C -0.55 -29.52 9.39 25.60 0.24 -29.28 16 16 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 17 C 0.02 1.30 5.46 84.66 0.46 1.76 16 18 N -0.92 -50.11 13.29 21.45 0.28 -49.83 16 19 Si 0.97 41.71 29.54 68.60 2.03 43.74 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 22 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 23 C 0.16 6.31 7.00 42.15 0.30 6.60 16 24 C -0.09 -3.14 9.66 71.24 0.69 -2.46 16 25 N -0.53 -13.63 9.71 -189.64 -1.84 -15.47 16 26 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.10 0.82 8.12 -2.38 -0.02 0.80 16 29 H 0.20 2.56 8.06 -2.91 -0.02 2.54 16 30 H 0.09 1.48 7.27 -2.39 -0.02 1.46 16 31 H 0.10 1.91 5.43 -2.39 -0.01 1.89 16 32 H 0.10 1.84 7.46 -2.39 -0.02 1.82 16 33 H 0.24 5.10 4.52 -2.91 -0.01 5.08 16 34 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.05 2.66 7.02 -2.38 -0.02 2.64 16 36 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 37 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.08 2.57 7.05 -2.39 -0.02 2.55 16 39 H 0.11 3.37 6.37 -2.38 -0.02 3.36 16 Total: -1.00 -65.38 340.76 4.21 -61.16 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 1.10 Total: 12.75 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 7.80 Total: 8.22 kcal Atomic # 7 Polarization: -106.10 SS G_CDS: -5.52 Total: -111.62 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.05 Total: -18.37 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Atomic # 16 Polarization: 5.25 SS G_CDS: -1.14 Total: 4.11 kcal Total: -65.38 4.21 -61.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888275783.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.663 kcal (2) G-P(sol) polarization free energy of solvation -65.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds