Wall clock time and date at job start Tue Mar 31 2020 12:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38044 * 126.28914 * 2 1 4 4 C 1.47420 * 126.41925 * 0.02562 * 3 2 1 5 5 O 1.21613 * 119.99914 * 359.97438 * 4 3 2 6 6 N 1.34770 * 120.00430 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00609 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.47231 * 325.00422 * 7 6 4 9 9 C 1.53002 * 109.46886 * 84.99726 * 7 6 4 10 10 C 1.50691 * 109.47507 * 205.00172 * 7 6 4 11 11 C 1.33639 * 126.03915 * 140.00160 * 10 7 6 12 12 N 1.31784 * 114.50230 * 179.97438 * 11 10 7 13 13 C 1.29023 * 117.12236 * 0.02562 * 12 11 10 14 14 S 1.70979 * 110.17115 * 359.97438 * 13 12 11 15 15 C 1.41294 * 107.16495 * 180.26268 * 3 2 1 16 16 N 1.30453 * 108.02405 * 359.59010 * 15 3 2 17 17 N 1.34255 * 126.29088 * 180.02562 * 2 1 3 18 18 C 1.46501 * 125.75354 * 359.97396 * 17 2 1 19 19 C 1.50701 * 109.47035 * 90.00319 * 18 17 2 20 20 H 1.08003 * 120.00188 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99908 * 179.97438 * 19 18 17 22 22 N 1.31504 * 120.00166 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99716 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47472 * 59.99782 * 23 21 19 25 25 H 1.48492 * 109.46941 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46822 * 299.99739 * 23 21 19 27 27 H 1.08995 * 109.46989 * 89.97244 * 1 2 3 28 28 H 1.08996 * 109.47205 * 209.97713 * 1 2 3 29 29 H 1.08999 * 109.47024 * 329.97548 * 1 2 3 30 30 H 0.97004 * 119.99680 * 359.97438 * 6 4 3 31 31 H 1.09004 * 109.47074 * 60.00532 * 9 7 6 32 32 H 1.08999 * 109.46884 * 180.02562 * 9 7 6 33 33 H 1.08999 * 109.47222 * 300.00092 * 9 7 6 34 34 H 1.07999 * 122.75182 * 359.92431 * 11 10 7 35 35 H 1.08009 * 124.91541 * 179.97438 * 13 12 11 36 36 H 1.07996 * 125.98796 * 179.73564 * 15 3 2 37 37 H 1.09002 * 109.47591 * 210.00095 * 18 17 2 38 38 H 1.09003 * 109.47531 * 330.00653 * 18 17 2 39 39 H 0.97006 * 120.00475 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8859 2.5203 0.0005 5 8 0.6996 2.7878 0.0006 6 7 2.8000 3.5106 0.0010 7 6 2.3646 4.9094 0.0009 8 1 1.4530 5.0062 -0.5888 9 6 2.0923 5.3588 1.4379 10 6 3.4449 5.7719 -0.5990 11 6 3.2576 6.8055 -1.4251 12 7 4.3664 7.4024 -1.8136 13 6 5.4785 6.9296 -1.3616 14 16 5.1781 5.5958 -0.3349 15 6 3.6591 0.6498 -0.0062 16 7 3.6340 -0.6545 -0.0008 17 7 2.3017 -1.0821 -0.0005 18 6 1.8501 -2.4758 -0.0006 19 6 1.6948 -2.9534 -1.4214 20 1 1.9113 -2.2858 -2.2423 21 6 1.2773 -4.2431 -1.6734 22 7 1.0142 -5.0562 -0.6740 23 14 1.0855 -4.8353 -3.4347 24 1 2.3914 -4.7377 -4.1349 25 1 0.6276 -6.2479 -3.4349 26 1 0.0843 -3.9909 -4.1346 27 1 -0.3633 0.0005 -1.0276 28 1 -0.3633 -0.8901 0.5135 29 1 -0.3633 0.8898 0.5142 30 1 3.7462 3.2973 0.0013 31 1 3.0039 5.2621 2.0277 32 1 1.7679 6.3994 1.4379 33 1 1.3108 4.7350 1.8718 34 1 2.2780 7.1249 -1.7486 35 1 6.4576 7.3198 -1.5976 36 1 4.5449 1.2675 -0.0118 37 1 2.5849 -3.0960 0.5129 38 1 0.8915 -2.5472 0.5135 39 1 0.7201 -5.9635 -0.8512 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889518259.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:08 Heat of formation + Delta-G solvation = 52.496562 kcal Electronic energy + Delta-G solvation = -23610.540773 eV Core-core repulsion = 20066.539519 eV Total energy + Delta-G solvation = -3544.001255 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.33378 -40.81702 -40.08900 -36.75262 -35.81573 -33.94831 -32.96424 -32.34574 -30.01960 -29.04958 -28.15220 -26.49844 -25.44830 -24.19094 -22.80804 -21.64366 -21.02147 -20.41373 -19.19298 -18.86495 -18.43275 -17.04777 -16.79209 -16.49486 -16.32589 -16.02442 -15.68954 -15.43649 -15.18280 -14.86730 -14.70471 -14.37737 -14.31288 -14.06451 -13.74378 -13.68115 -13.57257 -13.10185 -13.01788 -12.97547 -12.69096 -12.60136 -12.30485 -12.18625 -11.88205 -11.73481 -10.89933 -10.76095 -10.62832 -10.34974 -10.27525 -10.17488 -9.88819 -9.46855 -8.38069 -6.54502 -0.28829 0.36218 0.66949 0.76495 1.30970 1.38537 1.39000 1.47512 1.63147 1.83309 2.29032 2.33645 2.52047 2.94292 3.39064 3.64046 3.73834 3.76054 4.09817 4.16219 4.22065 4.30322 4.40118 4.50196 4.55997 4.63082 4.74653 4.79003 4.87723 4.93808 5.08694 5.15219 5.17514 5.24863 5.45243 5.49182 5.65912 5.74642 6.03929 6.50415 6.54247 6.72670 6.83266 7.16618 7.28937 8.69645 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.021754 B = 0.002712 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.815095 B =10322.735621 C =10664.306694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.148 3.852 3 C -0.332 4.332 4 C 0.611 3.389 5 O -0.574 6.574 6 N -0.716 5.716 7 C 0.228 3.772 8 H 0.098 0.902 9 C -0.153 4.153 10 C -0.240 4.240 11 C 0.037 3.963 12 N -0.501 5.501 13 C 0.021 3.979 14 S 0.163 5.837 15 C 0.078 3.922 16 N -0.335 5.335 17 N -0.338 5.338 18 C 0.267 3.733 19 C -0.557 4.557 20 H 0.052 0.948 21 C 0.025 3.975 22 N -0.916 5.916 23 Si 0.970 3.030 24 H -0.273 1.273 25 H -0.273 1.273 26 H -0.267 1.267 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.406 0.594 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.185 0.815 35 H 0.229 0.771 36 H 0.223 0.777 37 H 0.032 0.968 38 H 0.051 0.949 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.148 23.050 2.584 24.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.012 3.988 3 C -0.348 4.348 4 C 0.401 3.599 5 O -0.455 6.455 6 N -0.368 5.368 7 C 0.121 3.879 8 H 0.116 0.884 9 C -0.212 4.212 10 C -0.362 4.362 11 C -0.114 4.114 12 N -0.215 5.215 13 C -0.276 4.276 14 S 0.416 5.584 15 C -0.109 4.109 16 N -0.154 5.154 17 N -0.115 5.115 18 C 0.149 3.851 19 C -0.595 4.595 20 H 0.070 0.930 21 C -0.177 4.177 22 N -0.554 5.554 23 Si 0.794 3.206 24 H -0.198 1.198 25 H -0.198 1.198 26 H -0.192 1.192 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.122 0.878 30 H 0.242 0.758 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.202 0.798 35 H 0.246 0.754 36 H 0.240 0.760 37 H 0.050 0.950 38 H 0.069 0.931 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.637 21.624 2.848 23.109 hybrid contribution -0.887 0.118 -1.088 1.409 sum 6.749 21.741 1.760 22.833 Atomic orbital electron populations 1.20564 0.85794 1.04146 1.03947 1.21973 0.95956 0.86672 0.94215 1.19918 0.93266 0.92989 1.28593 1.17042 0.85008 0.83647 0.74191 1.90691 1.17577 1.84549 1.52653 1.45779 1.09735 1.04889 1.76438 1.19122 0.93699 0.77690 0.97392 0.88421 1.22171 1.02559 1.02436 0.94045 1.26098 0.98383 1.04427 1.07266 1.21976 0.98675 0.93975 0.96818 1.66402 0.98480 1.31206 1.25378 1.29018 1.02211 0.97634 0.98743 1.83932 0.98748 1.31018 1.44709 1.24467 0.97621 0.91654 0.97132 1.77101 0.98336 1.14347 1.25625 1.49112 1.03380 1.07787 1.51190 1.19367 0.95318 0.72324 0.98108 1.21372 1.48062 0.98503 0.91596 0.92996 1.25713 0.93804 0.95922 1.02222 1.69981 1.44734 1.07614 1.33092 0.85421 0.78828 0.77691 0.78683 1.19831 1.19766 1.19162 0.89923 0.91063 0.87778 0.75804 0.91389 0.89834 0.92488 0.79772 0.75441 0.76029 0.95029 0.93094 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.11 9.57 71.24 0.68 -2.43 16 2 C 0.15 5.95 7.01 42.14 0.30 6.24 16 3 C -0.33 -11.50 6.13 -20.15 -0.12 -11.62 16 4 C 0.61 18.52 7.78 86.66 0.67 19.20 16 5 O -0.57 -20.08 14.50 -4.07 -0.06 -20.14 16 6 N -0.72 -15.52 5.06 -449.39 -2.27 -17.79 16 7 C 0.23 4.22 3.03 44.24 0.13 4.35 16 8 H 0.10 2.07 7.57 -2.39 -0.02 2.05 16 9 C -0.15 -2.50 9.47 71.98 0.68 -1.82 16 10 C -0.24 -3.82 5.51 24.64 0.14 -3.69 16 11 C 0.04 0.63 11.24 83.66 0.94 1.57 16 12 N -0.50 -9.01 10.54 -203.74 -2.15 -11.15 16 13 C 0.02 0.26 12.23 130.66 1.60 1.85 16 14 S 0.16 1.93 22.29 -56.49 -1.26 0.67 16 15 C 0.08 2.53 11.50 85.65 0.99 3.52 16 16 N -0.33 -14.14 12.50 -56.27 -0.70 -14.84 16 17 N -0.34 -15.39 3.56 -336.68 -1.20 -16.59 16 18 C 0.27 13.70 5.97 85.63 0.51 14.21 16 19 C -0.56 -30.54 9.39 25.60 0.24 -30.30 16 20 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 21 C 0.02 1.34 5.46 84.66 0.46 1.80 16 22 N -0.92 -51.04 13.29 21.45 0.28 -50.75 16 23 Si 0.97 42.42 29.54 68.60 2.03 44.45 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 27 H 0.08 2.95 8.14 -2.39 -0.02 2.94 16 28 H 0.07 2.54 7.05 -2.39 -0.02 2.52 16 29 H 0.10 3.49 6.50 -2.39 -0.02 3.47 16 30 H 0.41 7.09 6.70 -92.71 -0.62 6.47 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.19 2.61 8.06 -2.91 -0.02 2.58 16 35 H 0.23 1.19 8.06 -2.91 -0.02 1.16 16 36 H 0.22 4.61 7.50 -2.91 -0.02 4.59 16 37 H 0.03 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.05 2.61 7.02 -2.39 -0.02 2.59 16 39 H 0.27 14.32 8.31 -92.70 -0.77 13.55 16 Total: -1.00 -68.37 352.16 2.36 -66.01 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.47 Total: 17.25 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 7.22 Total: 2.89 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -6.04 Total: -111.12 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.06 Total: -20.14 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -1.26 Total: 0.67 kcal Total: -68.37 2.36 -66.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889518259.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.504 kcal (2) G-P(sol) polarization free energy of solvation -68.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds