Wall clock time and date at job start Tue Mar 31 2020 13:02:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52999 * 109.47000 * 2 1
4 4 C 1.52997 * 109.47089 * 239.99527 * 2 1 3
5 5 H 1.09002 * 110.51909 * 57.37703 * 4 2 1
6 6 C 1.51621 * 110.58227 * 180.33162 * 4 2 1
7 7 O 1.21308 * 127.33904 * 298.49763 * 6 4 2
8 8 N 1.34871 * 105.33190 * 118.55077 * 6 4 2
9 9 C 1.46506 * 124.36713 * 180.02562 * 8 6 4
10 10 C 1.50704 * 109.47062 * 90.02203 * 9 8 6
11 11 H 1.08000 * 119.99935 * 359.97438 * 10 9 8
12 12 C 1.37872 * 119.99685 * 180.02562 * 10 9 8
13 13 N 1.31508 * 120.00347 * 359.97438 * 12 10 9
14 14 Si 1.86804 * 119.99622 * 180.02562 * 12 10 9
15 15 H 1.48491 * 109.47222 * 359.97438 * 14 12 10
16 16 H 1.48505 * 109.47143 * 119.99813 * 14 12 10
17 17 H 1.48503 * 109.46772 * 239.99447 * 14 12 10
18 18 N 1.39162 * 111.27269 * 359.97438 * 8 6 4
19 19 C 1.29399 * 112.77840 * 0.02562 * 18 8 6
20 20 C 1.47480 * 126.52450 * 180.02562 * 19 18 8
21 21 C 1.39708 * 120.14919 * 33.12406 * 20 19 18
22 22 C 1.37925 * 119.86246 * 179.74272 * 21 20 19
23 23 C 1.38366 * 120.17213 * 0.50331 * 22 21 20
24 24 C 1.38455 * 120.30533 * 359.77107 * 23 22 21
25 25 Cl 1.73600 * 119.93739 * 179.97438 * 24 23 22
26 26 C 1.38077 * 120.12859 * 359.97373 * 24 23 22
27 27 H 1.08999 * 109.47067 * 188.12382 * 1 2 3
28 28 H 1.09004 * 109.46891 * 308.11689 * 1 2 3
29 29 H 1.08994 * 109.47438 * 68.11877 * 1 2 3
30 30 H 1.09002 * 109.46986 * 119.99775 * 2 1 3
31 31 H 1.09002 * 109.47067 * 299.99725 * 3 2 1
32 32 H 1.08999 * 109.47610 * 59.99853 * 3 2 1
33 33 H 1.09000 * 109.46944 * 180.02562 * 3 2 1
34 34 H 1.09001 * 109.47247 * 210.02002 * 9 8 6
35 35 H 1.08997 * 109.46805 * 330.02080 * 9 8 6
36 36 H 0.97006 * 120.00259 * 180.02562 * 13 12 10
37 37 H 1.07992 * 120.06762 * 359.97438 * 21 20 19
38 38 H 1.08003 * 119.91069 * 180.23239 * 22 21 20
39 39 H 1.08004 * 119.84748 * 179.74065 * 23 22 21
40 40 H 1.08006 * 120.08819 * 180.02562 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 -1.2492
5 1 1.6485 -0.2486 -2.1499
6 6 3.5559 -0.7432 -1.2705
7 8 4.3051 0.2103 -1.3044
8 7 3.8942 -2.0485 -1.2450
9 6 5.2721 -2.5461 -1.2527
10 6 5.7643 -2.6843 0.1649
11 1 5.1157 -2.4268 0.9892
12 6 7.0429 -3.1384 0.4095
13 7 7.8328 -3.4514 -0.5942
14 14 7.6527 -3.3104 2.1669
15 1 6.5792 -2.8973 3.1060
16 1 8.0210 -4.7253 2.4268
17 1 8.8430 -2.4447 2.3646
18 7 2.7656 -2.8619 -1.2092
19 6 1.6615 -2.1871 -1.2091
20 6 0.2947 -2.7402 -1.1755
21 6 0.0341 -3.9250 -0.4826
22 6 -1.2473 -4.4342 -0.4505
23 6 -2.2722 -3.7802 -1.1112
24 6 -2.0207 -2.6086 -1.8048
25 17 -3.3136 -1.7964 -2.6309
26 6 -0.7436 -2.0850 -1.8408
27 1 -0.3633 -1.0173 0.1452
28 1 -0.3633 0.6344 0.8086
29 1 -0.3634 0.3830 -0.9536
30 1 1.8934 -0.5138 0.8900
31 1 1.6767 1.9563 -0.8900
32 1 1.6767 1.9564 0.8899
33 1 3.1300 1.4425 -0.0005
34 1 5.3047 -3.5181 -1.7450
35 1 5.9087 -1.8444 -1.7916
36 1 8.7323 -3.7713 -0.4220
37 1 0.8336 -4.4391 0.0300
38 1 -1.4504 -5.3481 0.0881
39 1 -3.2729 -4.1859 -1.0862
40 1 -0.5483 -1.1708 -2.3817
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000899346217.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:02:33
Heat of formation + Delta-G solvation = 26.938866 kcal
Electronic energy + Delta-G solvation = -24540.583139 eV
Core-core repulsion = 20961.137162 eV
Total energy + Delta-G solvation = -3579.445977 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 320.103 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-41.09171 -39.30152 -36.92084 -36.54212 -35.74903 -33.47144 -32.27567 -31.11287
-30.37681 -28.07770 -27.05643 -26.94892 -23.92810 -22.90163 -22.74529 -21.12705
-19.98094 -19.21952 -17.31934 -16.81924 -16.15022 -16.02208 -15.63095 -15.38499
-14.95523 -14.59146 -14.23214 -13.98408 -13.87860 -13.70272 -13.33328 -12.99729
-12.66541 -12.32398 -12.25135 -12.06052 -11.85129 -11.73318 -11.70533 -11.57028
-11.34488 -11.15114 -11.06782 -10.98706 -10.81409 -10.65872 -10.39864 -10.12611
-9.77317 -9.22689 -8.99456 -8.93850 -8.57388 -7.77005 -6.18994 -4.25098
0.66214 0.99982 1.85646 2.05467 3.04280 3.21445 3.23591 3.30876
3.36387 3.51779 3.97375 4.28399 4.34132 4.60532 4.71943 4.79744
4.89071 5.00710 5.11270 5.16024 5.27226 5.30760 5.39275 5.46980
5.62782 5.69345 5.73797 5.86424 5.91248 6.01494 6.06897 6.12955
6.24389 6.27824 6.35850 6.52548 6.54002 6.99277 7.08580 7.21995
7.75439 7.98208 8.26300 8.47883 8.79021 9.40171 10.89289
Molecular weight = 320.10amu
Principal moments of inertia in cm(-1)
A = 0.017148 B = 0.003613 C = 0.003283
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1632.470948 B = 7748.468169 C = 8525.452045
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.064 4.064
3 C -0.156 4.156
4 C -0.126 4.126
5 H 0.124 0.876
6 C 0.499 3.501
7 O -0.493 6.493
8 N -0.436 5.436
9 C 0.264 3.736
10 C -0.533 4.533
11 H 0.060 0.940
12 C 0.064 3.936
13 N -0.892 5.892
14 Si 0.904 3.096
15 H -0.272 1.272
16 H -0.281 1.281
17 H -0.281 1.281
18 N -0.186 5.186
19 C 0.075 3.925
20 C 0.013 3.987
21 C -0.084 4.084
22 C -0.106 4.106
23 C -0.106 4.106
24 C -0.037 4.037
25 Cl -0.072 7.072
26 C -0.085 4.085
27 H 0.064 0.936
28 H 0.058 0.942
29 H 0.057 0.943
30 H 0.075 0.925
31 H 0.055 0.945
32 H 0.055 0.945
33 H 0.076 0.924
34 H 0.049 0.951
35 H 0.054 0.946
36 H 0.266 0.734
37 H 0.139 0.861
38 H 0.136 0.864
39 H 0.133 0.867
40 H 0.138 0.862
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.440 1.693 -1.238 22.538
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.083 4.083
3 C -0.213 4.213
4 C -0.150 4.150
5 H 0.141 0.859
6 C 0.285 3.715
7 O -0.365 6.365
8 N -0.255 5.255
9 C 0.147 3.853
10 C -0.572 4.572
11 H 0.079 0.921
12 C -0.138 4.138
13 N -0.530 5.530
14 Si 0.731 3.269
15 H -0.197 1.197
16 H -0.207 1.207
17 H -0.207 1.207
18 N 0.006 4.994
19 C -0.114 4.114
20 C 0.011 3.989
21 C -0.104 4.104
22 C -0.124 4.124
23 C -0.125 4.125
24 C -0.063 4.063
25 Cl -0.043 7.043
26 C -0.106 4.106
27 H 0.083 0.917
28 H 0.077 0.923
29 H 0.076 0.924
30 H 0.093 0.907
31 H 0.074 0.926
32 H 0.074 0.926
33 H 0.095 0.905
34 H 0.067 0.933
35 H 0.072 0.928
36 H 0.076 0.924
37 H 0.157 0.843
38 H 0.154 0.846
39 H 0.151 0.849
40 H 0.156 0.844
Dipole moment (debyes) X Y Z Total
from point charges -21.199 1.312 -1.381 21.284
hybrid contribution 0.201 0.613 0.774 1.007
sum -20.997 1.925 -0.606 21.094
Atomic orbital electron populations
1.22140 0.94219 1.02499 1.01956 1.20742 0.96061 0.96435 0.95108
1.21965 1.03521 0.94409 1.01387 1.21741 0.95795 0.94826 1.02608
0.85862 1.21018 0.89722 0.83998 0.76811 1.90697 1.58806 1.38094
1.48938 1.50472 1.06054 1.03520 1.65447 1.19554 0.70600 0.96440
0.98667 1.21361 0.98912 1.45255 0.91676 0.92135 1.24914 0.96197
0.94806 0.97929 1.69927 1.08292 1.44041 1.30745 0.86344 0.78821
0.77829 0.83903 1.19698 1.20668 1.20676 1.75288 0.93448 1.23098
1.07553 1.22867 0.92139 0.92270 1.04147 1.17474 0.88349 0.94717
0.98364 1.21520 0.97425 0.94092 0.97314 1.21060 0.91982 1.00154
0.99237 1.21139 1.00377 0.93926 0.97103 1.20660 0.89326 0.95953
1.00407 1.98374 1.49351 1.79013 1.77564 1.21070 0.90212 1.00257
0.99044 0.91726 0.92282 0.92377 0.90663 0.92635 0.92580 0.90492
0.93280 0.92816 0.92416 0.84296 0.84595 0.84896 0.84428
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.58 7.61 37.16 0.28 -1.29 16
2 C -0.06 -0.87 2.51 -90.62 -0.23 -1.10 16
3 C -0.16 -2.12 8.86 37.16 0.33 -1.79 16
4 C -0.13 -1.96 2.34 -92.11 -0.22 -2.18 16
5 H 0.12 1.63 8.12 -51.93 -0.42 1.21 16
6 C 0.50 10.54 7.46 -10.49 -0.08 10.46 16
7 O -0.49 -11.69 15.70 5.53 0.09 -11.61 16
8 N -0.44 -9.92 3.52 -61.10 -0.22 -10.13 16
9 C 0.26 7.00 5.98 -5.19 -0.03 6.96 16
10 C -0.53 -15.12 9.39 -34.44 -0.32 -15.45 16
11 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16
12 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16
13 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16
14 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16
15 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16
16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
18 N -0.19 -3.65 12.07 35.24 0.43 -3.23 16
19 C 0.08 1.17 6.36 -79.49 -0.51 0.66 16
20 C 0.01 0.16 4.20 -105.06 -0.44 -0.28 16
21 C -0.08 -0.93 9.75 -39.15 -0.38 -1.31 16
22 C -0.11 -0.91 10.03 -39.65 -0.40 -1.31 16
23 C -0.11 -0.88 9.82 -39.45 -0.39 -1.27 16
24 C -0.04 -0.34 6.31 -39.56 -0.25 -0.59 16
25 Cl -0.07 -0.63 28.95 -51.86 -1.50 -2.13 16
26 C -0.09 -0.87 6.85 -39.11 -0.27 -1.14 16
27 H 0.06 0.68 5.09 -51.93 -0.26 0.42 16
28 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16
29 H 0.06 0.53 7.20 -51.93 -0.37 0.16 16
30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16
31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16
32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16
33 H 0.08 1.30 5.95 -51.93 -0.31 1.00 16
34 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16
35 H 0.05 1.52 8.02 -51.93 -0.42 1.11 16
36 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16
37 H 0.14 1.63 8.06 -52.49 -0.42 1.20 16
38 H 0.14 0.85 8.06 -52.48 -0.42 0.42 16
39 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16
40 H 0.14 1.27 7.16 -52.48 -0.38 0.90 16
LS Contribution 349.84 15.07 5.27 5.27
Total: -1.00 -31.17 349.84 -8.30 -39.47
By element:
Atomic # 1 Polarization: 3.98 SS G_CDS: -5.09 Total: -1.11 kcal
Atomic # 6 Polarization: -4.91 SS G_CDS: -2.99 Total: -7.90 kcal
Atomic # 7 Polarization: -39.53 SS G_CDS: 0.95 Total: -38.59 kcal
Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.61 kcal
Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal
Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal
Total LS contribution 5.27 Total: 5.27 kcal
Total: -31.17 -8.30 -39.47 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000899346217.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 66.408 kcal
(2) G-P(sol) polarization free energy of solvation -31.173 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.235 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.470 kcal
(6) G-S(sol) free energy of system = (1) + (5) 26.939 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds