Wall clock time and date at job start Tue Mar 31 2020 13:02:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52999 * 109.47000 * 2 1
4 4 C 1.52997 * 109.47089 * 239.99527 * 2 1 3
5 5 H 1.09002 * 110.51909 * 57.37703 * 4 2 1
6 6 C 1.51621 * 110.58227 * 180.33162 * 4 2 1
7 7 O 1.21308 * 127.33904 * 298.49763 * 6 4 2
8 8 N 1.34871 * 105.33190 * 118.55077 * 6 4 2
9 9 C 1.46506 * 124.36713 * 180.02562 * 8 6 4
10 10 C 1.50704 * 109.47062 * 90.02203 * 9 8 6
11 11 H 1.08000 * 119.99935 * 359.97438 * 10 9 8
12 12 C 1.37872 * 119.99685 * 180.02562 * 10 9 8
13 13 N 1.31508 * 120.00347 * 359.97438 * 12 10 9
14 14 Si 1.86804 * 119.99622 * 180.02562 * 12 10 9
15 15 H 1.48491 * 109.47222 * 359.97438 * 14 12 10
16 16 H 1.48505 * 109.47143 * 119.99813 * 14 12 10
17 17 H 1.48503 * 109.46772 * 239.99447 * 14 12 10
18 18 N 1.39162 * 111.27269 * 359.97438 * 8 6 4
19 19 C 1.29399 * 112.77840 * 0.02562 * 18 8 6
20 20 C 1.47480 * 126.52450 * 180.02562 * 19 18 8
21 21 C 1.39708 * 120.14919 * 33.12406 * 20 19 18
22 22 C 1.37925 * 119.86246 * 179.74272 * 21 20 19
23 23 C 1.38366 * 120.17213 * 0.50331 * 22 21 20
24 24 C 1.38455 * 120.30533 * 359.77107 * 23 22 21
25 25 Cl 1.73600 * 119.93739 * 179.97438 * 24 23 22
26 26 C 1.38077 * 120.12859 * 359.97373 * 24 23 22
27 27 H 1.08999 * 109.47067 * 188.12382 * 1 2 3
28 28 H 1.09004 * 109.46891 * 308.11689 * 1 2 3
29 29 H 1.08994 * 109.47438 * 68.11877 * 1 2 3
30 30 H 1.09002 * 109.46986 * 119.99775 * 2 1 3
31 31 H 1.09002 * 109.47067 * 299.99725 * 3 2 1
32 32 H 1.08999 * 109.47610 * 59.99853 * 3 2 1
33 33 H 1.09000 * 109.46944 * 180.02562 * 3 2 1
34 34 H 1.09001 * 109.47247 * 210.02002 * 9 8 6
35 35 H 1.08997 * 109.46805 * 330.02080 * 9 8 6
36 36 H 0.97006 * 120.00259 * 180.02562 * 13 12 10
37 37 H 1.07992 * 120.06762 * 359.97438 * 21 20 19
38 38 H 1.08003 * 119.91069 * 180.23239 * 22 21 20
39 39 H 1.08004 * 119.84748 * 179.74065 * 23 22 21
40 40 H 1.08006 * 120.08819 * 180.02562 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 -1.2492
5 1 1.6485 -0.2486 -2.1499
6 6 3.5559 -0.7432 -1.2705
7 8 4.3051 0.2103 -1.3044
8 7 3.8942 -2.0485 -1.2450
9 6 5.2721 -2.5461 -1.2527
10 6 5.7643 -2.6843 0.1649
11 1 5.1157 -2.4268 0.9892
12 6 7.0429 -3.1384 0.4095
13 7 7.8328 -3.4514 -0.5942
14 14 7.6527 -3.3104 2.1669
15 1 6.5792 -2.8973 3.1060
16 1 8.0210 -4.7253 2.4268
17 1 8.8430 -2.4447 2.3646
18 7 2.7656 -2.8619 -1.2092
19 6 1.6615 -2.1871 -1.2091
20 6 0.2947 -2.7402 -1.1755
21 6 0.0341 -3.9250 -0.4826
22 6 -1.2473 -4.4342 -0.4505
23 6 -2.2722 -3.7802 -1.1112
24 6 -2.0207 -2.6086 -1.8048
25 17 -3.3136 -1.7964 -2.6309
26 6 -0.7436 -2.0850 -1.8408
27 1 -0.3633 -1.0173 0.1452
28 1 -0.3633 0.6344 0.8086
29 1 -0.3634 0.3830 -0.9536
30 1 1.8934 -0.5138 0.8900
31 1 1.6767 1.9563 -0.8900
32 1 1.6767 1.9564 0.8899
33 1 3.1300 1.4425 -0.0005
34 1 5.3047 -3.5181 -1.7450
35 1 5.9087 -1.8444 -1.7916
36 1 8.7323 -3.7713 -0.4220
37 1 0.8336 -4.4391 0.0300
38 1 -1.4504 -5.3481 0.0881
39 1 -3.2729 -4.1859 -1.0862
40 1 -0.5483 -1.1708 -2.3817
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000899346217.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:02:33
Heat of formation + Delta-G solvation = 8.954415 kcal
Electronic energy + Delta-G solvation = -24541.363003 eV
Core-core repulsion = 20961.137162 eV
Total energy + Delta-G solvation = -3580.225841 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 320.103 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-42.53116 -40.21801 -38.40983 -37.40345 -36.99048 -35.40768 -33.71314 -32.07116
-31.57171 -29.48340 -28.78662 -27.98136 -25.48150 -24.32833 -23.60070 -22.40012
-21.18845 -20.64285 -18.91180 -18.39010 -17.65993 -17.19837 -16.89196 -16.58779
-16.38666 -15.94914 -15.61742 -15.12988 -14.98584 -14.67039 -14.53942 -14.36100
-14.10972 -13.79547 -13.68904 -13.41684 -13.06053 -12.97441 -12.80129 -12.75166
-12.65328 -12.51508 -12.43499 -12.30766 -12.07008 -11.87885 -11.82486 -11.63606
-11.46450 -10.80572 -10.64708 -10.21962 -9.74539 -9.27293 -8.35360 -6.52251
-0.29249 0.23501 0.78881 1.15230 1.31813 1.33979 1.44495 1.55588
1.65722 2.31220 2.62250 2.67185 2.94186 3.00295 3.53612 3.69430
3.92179 3.97794 4.13869 4.16430 4.26377 4.30242 4.42453 4.52625
4.57285 4.69379 4.80553 4.85360 4.90703 4.96373 5.01232 5.08422
5.16374 5.23098 5.29470 5.35656 5.40437 5.43962 5.47337 5.58917
5.75416 5.81827 6.50950 6.67243 6.89443 7.18732 8.72612
Molecular weight = 320.10amu
Principal moments of inertia in cm(-1)
A = 0.017148 B = 0.003613 C = 0.003283
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1632.470948 B = 7748.468169 C = 8525.452045
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.059 4.059
3 C -0.152 4.152
4 C -0.116 4.116
5 H 0.156 0.844
6 C 0.481 3.519
7 O -0.536 6.536
8 N -0.458 5.458
9 C 0.281 3.719
10 C -0.553 4.553
11 H 0.049 0.951
12 C 0.015 3.985
13 N -0.922 5.922
14 Si 0.974 3.026
15 H -0.270 1.270
16 H -0.265 1.265
17 H -0.273 1.273
18 N -0.241 5.241
19 C 0.125 3.875
20 C -0.016 4.016
21 C -0.090 4.090
22 C -0.099 4.099
23 C -0.088 4.088
24 C -0.041 4.041
25 Cl -0.062 7.062
26 C -0.075 4.075
27 H 0.066 0.934
28 H 0.075 0.925
29 H 0.078 0.922
30 H 0.050 0.950
31 H 0.073 0.927
32 H 0.077 0.923
33 H 0.035 0.965
34 H 0.030 0.970
35 H 0.020 0.980
36 H 0.273 0.727
37 H 0.125 0.875
38 H 0.164 0.836
39 H 0.161 0.839
40 H 0.150 0.850
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.507 1.537 -0.313 26.553
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.079 4.079
3 C -0.209 4.209
4 C -0.140 4.140
5 H 0.174 0.826
6 C 0.269 3.731
7 O -0.412 6.412
8 N -0.276 5.276
9 C 0.162 3.838
10 C -0.591 4.591
11 H 0.067 0.933
12 C -0.186 4.186
13 N -0.561 5.561
14 Si 0.798 3.202
15 H -0.195 1.195
16 H -0.190 1.190
17 H -0.198 1.198
18 N -0.047 5.047
19 C -0.065 4.065
20 C -0.018 4.018
21 C -0.110 4.110
22 C -0.117 4.117
23 C -0.108 4.108
24 C -0.068 4.068
25 Cl -0.033 7.033
26 C -0.096 4.096
27 H 0.084 0.916
28 H 0.094 0.906
29 H 0.097 0.903
30 H 0.069 0.931
31 H 0.092 0.908
32 H 0.096 0.904
33 H 0.054 0.946
34 H 0.048 0.952
35 H 0.038 0.962
36 H 0.082 0.918
37 H 0.143 0.857
38 H 0.182 0.818
39 H 0.179 0.821
40 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges -25.301 1.134 -0.466 25.330
hybrid contribution 1.201 0.632 0.428 1.423
sum -24.099 1.766 -0.038 24.164
Atomic orbital electron populations
1.22105 0.90721 1.03247 1.03883 1.20776 0.98667 0.95779 0.92661
1.21927 1.00878 0.94755 1.03373 1.21853 0.91398 0.95523 1.05180
0.82635 1.21944 0.92278 0.82952 0.75900 1.90651 1.60516 1.38955
1.51053 1.50246 1.05916 1.04604 1.66791 1.18913 0.73056 0.94469
0.97335 1.21537 0.99503 1.46008 0.92077 0.93307 1.25856 0.96095
0.93995 1.02610 1.70030 1.08777 1.44243 1.33023 0.85269 0.78191
0.78572 0.78199 1.19476 1.19012 1.19827 1.75342 0.93476 1.22918
1.12975 1.23584 0.92733 0.92056 0.98124 1.17418 0.86676 0.96261
1.01453 1.21558 0.98484 0.93669 0.97292 1.21320 0.90638 1.00847
0.98877 1.21521 1.01481 0.92842 0.94911 1.20744 0.89183 0.96347
1.00524 1.98389 1.48635 1.78883 1.77361 1.21121 0.89981 1.00291
0.98203 0.91560 0.90564 0.90272 0.93142 0.90794 0.90415 0.94583
0.95177 0.96163 0.91825 0.85712 0.81815 0.82095 0.83219
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.48 7.61 71.98 0.55 -1.94 16
2 C -0.06 -1.55 2.51 -10.79 -0.03 -1.58 16
3 C -0.15 -4.03 8.86 71.98 0.64 -3.39 16
4 C -0.12 -3.61 2.34 -11.76 -0.03 -3.64 16
5 H 0.16 3.85 8.12 -2.39 -0.02 3.83 16
6 C 0.48 21.63 7.46 87.94 0.66 22.28 16
7 O -0.54 -27.38 15.70 -3.12 -0.05 -27.43 16
8 N -0.46 -22.42 3.52 -465.54 -1.64 -24.06 16
9 C 0.28 16.20 5.98 85.63 0.51 16.71 16
10 C -0.55 -33.28 9.39 25.60 0.24 -33.04 16
11 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16
12 C 0.01 0.86 5.46 84.65 0.46 1.32 16
13 N -0.92 -55.79 13.29 21.44 0.28 -55.51 16
14 Si 0.97 45.38 29.54 68.60 2.03 47.40 16
15 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16
16 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16
17 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16
18 N -0.24 -9.96 12.07 -42.41 -0.51 -10.47 16
19 C 0.12 3.87 6.36 45.59 0.29 4.16 16
20 C -0.02 -0.35 4.20 -20.15 -0.08 -0.44 16
21 C -0.09 -1.84 9.75 22.55 0.22 -1.62 16
22 C -0.10 -1.34 10.03 22.23 0.22 -1.11 16
23 C -0.09 -1.06 9.82 22.35 0.22 -0.84 16
24 C -0.04 -0.60 6.31 22.28 0.14 -0.46 16
25 Cl -0.06 -0.83 28.95 -2.72 -0.08 -0.91 16
26 C -0.08 -1.29 6.85 22.57 0.15 -1.14 16
27 H 0.07 1.16 5.09 -2.39 -0.01 1.15 16
28 H 0.08 1.13 8.13 -2.38 -0.02 1.11 16
29 H 0.08 1.08 7.20 -2.39 -0.02 1.06 16
30 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16
31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16
32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16
33 H 0.04 1.26 5.95 -2.39 -0.01 1.25 16
34 H 0.03 1.79 8.14 -2.39 -0.02 1.77 16
35 H 0.02 1.27 8.02 -2.39 -0.02 1.26 16
36 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16
37 H 0.12 2.91 8.06 -2.91 -0.02 2.88 16
38 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16
39 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16
40 H 0.15 2.16 7.16 -2.91 -0.02 2.14 16
Total: -1.00 -74.03 349.84 5.25 -68.78
By element:
Atomic # 1 Polarization: 5.86 SS G_CDS: 1.06 Total: 6.92 kcal
Atomic # 6 Polarization: -8.88 SS G_CDS: 4.16 Total: -4.72 kcal
Atomic # 7 Polarization: -88.17 SS G_CDS: -1.87 Total: -90.04 kcal
Atomic # 8 Polarization: -27.38 SS G_CDS: -0.05 Total: -27.43 kcal
Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal
Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal
Total: -74.03 5.25 -68.78 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000899346217.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.730 kcal
(2) G-P(sol) polarization free energy of solvation -74.029 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.701 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.254 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.775 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.954 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds