Wall clock time and date at job start Tue Mar 31 2020 12:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38236 * 120.00564 * 2 1 4 4 C 1.38221 * 120.01063 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.02645 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99358 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46869 * 90.00024 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.50697 * 109.46949 * 90.00203 * 10 9 7 12 12 H 1.08004 * 120.00186 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00081 * 180.02562 * 11 10 9 14 14 N 1.31519 * 120.00096 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00103 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47135 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47061 * 119.99902 * 15 13 11 18 18 H 1.48503 * 109.47075 * 240.00004 * 15 13 11 19 19 C 1.46506 * 120.00264 * 0.28128 * 9 7 6 20 20 C 1.52998 * 109.47320 * 89.99349 * 19 9 7 21 21 C 1.47196 * 109.47171 * 180.02562 * 20 19 9 22 22 N 9.37252 * 165.68978 * 308.46480 * 2 1 3 23 23 C 1.38190 * 120.01626 * 0.23503 * 5 4 3 24 24 C 1.38323 * 120.00374 * 179.97438 * 2 1 3 25 25 Cl 1.73598 * 120.01730 * 0.04541 * 24 2 1 26 26 H 1.09000 * 109.47334 * 89.99776 * 1 2 3 27 27 H 1.09001 * 109.46941 * 210.00453 * 1 2 3 28 28 H 1.09002 * 109.46766 * 329.99768 * 1 2 3 29 29 H 1.07997 * 119.99210 * 359.95694 * 3 2 1 30 30 H 1.07997 * 119.98347 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.47210 * 330.00318 * 6 5 4 32 32 H 1.08994 * 109.47551 * 209.99970 * 6 5 4 33 33 H 1.09001 * 109.47567 * 210.00057 * 10 9 7 34 34 H 1.09005 * 109.47076 * 330.00563 * 10 9 7 35 35 H 0.96991 * 119.99957 * 180.02562 * 14 13 11 36 36 H 1.08994 * 109.46996 * 209.99677 * 19 9 7 37 37 H 1.09001 * 109.46578 * 329.99540 * 19 9 7 38 38 H 1.08997 * 109.47106 * 300.00561 * 20 19 9 39 39 H 1.09004 * 109.46895 * 60.00075 * 20 19 9 40 40 H 1.07993 * 120.01193 * 179.74436 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2725 0.0002 0.0005 6 6 5.7795 0.0012 0.0005 7 6 6.2818 0.0016 1.4214 8 8 5.4936 0.0006 2.3432 9 7 7.6068 -0.0032 1.6677 10 6 8.0951 -0.0090 3.0489 11 6 8.2583 -1.4317 3.5180 12 1 8.0223 -2.2499 2.8536 13 6 8.7089 -1.6891 4.7955 14 7 8.9958 -0.6928 5.6048 15 14 8.9119 -3.4527 5.3767 16 1 8.5246 -4.3815 4.2847 17 1 10.3292 -3.6907 5.7503 18 1 8.0426 -3.6879 6.5575 19 6 8.5590 -0.0025 0.5542 20 6 8.8946 1.4403 0.1711 21 6 9.8508 1.4410 -0.9480 22 7 10.5887 1.4410 -1.8139 23 6 3.5826 -1.1971 -0.0049 24 6 2.1987 -1.1979 0.0005 25 17 1.3313 -2.7016 0.0000 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6583 2.1324 -0.0007 30 1 4.1202 2.1327 0.0001 31 1 6.1423 0.8915 -0.5133 32 1 6.1435 -0.8884 -0.5132 33 1 9.0569 0.5018 3.0965 34 1 7.3786 0.5050 3.6898 35 1 9.3132 -0.8739 6.5032 36 1 9.4699 -0.5199 0.8549 37 1 8.1171 -0.5123 -0.3019 38 1 7.9836 1.9577 -0.1294 39 1 9.3364 1.9501 1.0273 40 1 4.1231 -2.1320 -0.0091 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930479415.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:43 Heat of formation + Delta-G solvation = -2.528134 kcal Electronic energy + Delta-G solvation = -23665.053311 eV Core-core repulsion = 20084.329549 eV Total energy + Delta-G solvation = -3580.723762 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.103 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.97697 -38.85815 -36.86817 -36.46258 -35.26242 -33.80267 -32.85743 -30.86832 -30.75059 -29.93847 -27.35074 -25.37772 -24.03218 -22.86622 -22.75334 -20.98216 -18.60133 -17.65114 -16.71031 -16.47499 -16.32117 -16.01536 -15.43461 -15.25594 -14.74276 -14.48163 -14.23116 -14.12459 -13.78054 -13.61965 -13.08725 -12.86966 -12.68803 -12.52617 -12.44802 -12.33999 -12.25370 -11.89640 -11.62103 -11.60836 -11.32788 -11.28956 -11.22113 -10.99175 -10.84516 -10.75243 -10.62263 -10.20601 -9.70924 -9.14995 -8.79432 -8.49461 -8.45846 -7.87399 -6.10546 -4.15007 1.16067 1.27178 2.13538 2.69428 2.77713 3.25404 3.27262 3.35866 3.39179 3.47836 3.72950 4.22214 4.41050 4.59475 4.69474 4.85611 4.93653 5.02371 5.11545 5.14888 5.22660 5.26061 5.34849 5.40716 5.46984 5.50407 5.57043 5.66517 5.80297 5.84974 5.98491 6.05916 6.19340 6.35463 6.50509 6.79197 6.91996 7.33538 7.40595 7.54909 7.85706 8.15424 8.22546 8.81759 8.96217 9.50811 10.97650 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.009224 B = 0.003999 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3034.901188 B = 7000.575850 C = 9062.249323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.083 4.083 3 C -0.109 4.109 4 C -0.097 4.097 5 C -0.049 4.049 6 C -0.109 4.109 7 C 0.508 3.492 8 O -0.523 6.523 9 N -0.598 5.598 10 C 0.245 3.755 11 C -0.528 4.528 12 H 0.058 0.942 13 C 0.063 3.937 14 N -0.893 5.893 15 Si 0.896 3.104 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.283 1.283 19 C 0.117 3.883 20 C -0.050 4.050 21 C 0.216 3.784 22 N -0.445 5.445 23 C -0.091 4.091 24 C -0.033 4.033 25 Cl -0.075 7.075 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.129 0.871 30 H 0.127 0.873 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.263 0.737 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.757 4.108 -13.836 18.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.084 4.084 3 C -0.127 4.127 4 C -0.115 4.115 5 C -0.049 4.049 6 C -0.149 4.149 7 C 0.294 3.706 8 O -0.398 6.398 9 N -0.330 5.330 10 C 0.126 3.874 11 C -0.567 4.567 12 H 0.077 0.923 13 C -0.139 4.139 14 N -0.532 5.532 15 Si 0.723 3.277 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.010 4.010 20 C -0.092 4.092 21 C -0.102 4.102 22 N -0.123 5.123 23 C -0.110 4.110 24 C -0.060 4.060 25 Cl -0.046 7.046 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.147 0.853 30 H 0.145 0.855 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.124 0.876 39 H 0.135 0.865 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.089 4.005 -14.410 18.619 hybrid contribution -0.006 -1.125 0.838 1.403 sum -11.095 2.880 -13.572 17.765 Atomic orbital electron populations 1.20839 0.90597 1.03379 1.02526 1.19703 0.96511 0.91515 1.00673 1.20898 0.94033 0.96905 1.00882 1.21053 0.94103 0.97701 0.98649 1.19254 0.94382 0.92634 0.98673 1.20850 0.92158 1.04863 0.97007 1.20165 0.82713 0.77660 0.90028 1.90730 1.54532 1.48510 1.46035 1.48220 1.04199 1.71857 1.08683 1.19351 0.95157 0.97676 0.75204 1.21451 1.44378 0.92295 0.98562 0.92332 1.24911 0.95254 0.97357 0.96417 1.69924 1.45013 1.30759 1.07536 0.86479 0.77609 0.84693 0.78875 1.19780 1.20972 1.20878 1.21319 0.95956 0.93041 0.90678 1.19905 0.95528 1.01617 0.92126 1.29180 0.93860 0.93090 0.94042 1.81287 1.10630 1.08660 1.11696 1.20876 0.91845 0.98788 0.99464 1.20694 0.92225 0.86438 1.06641 1.98344 1.76895 1.32422 1.96970 0.90982 0.90952 0.91227 0.85295 0.85510 0.88250 0.88129 0.94734 0.93572 0.92724 0.88730 0.90568 0.87582 0.86472 0.85073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 9.62 36.01 0.35 -0.71 16 2 C -0.08 -0.97 5.88 -104.59 -0.62 -1.59 16 3 C -0.11 -1.20 9.70 -39.59 -0.38 -1.58 16 4 C -0.10 -1.14 9.70 -39.58 -0.38 -1.53 16 5 C -0.05 -0.64 4.37 -104.63 -0.46 -1.10 16 6 C -0.11 -1.31 4.38 -29.03 -0.13 -1.43 16 7 C 0.51 8.90 7.67 -10.98 -0.08 8.82 16 8 O -0.52 -11.86 15.61 5.55 0.09 -11.77 16 9 N -0.60 -10.43 2.46 -175.06 -0.43 -10.86 16 10 C 0.24 5.67 5.16 -5.20 -0.03 5.64 16 11 C -0.53 -13.93 9.39 -34.44 -0.32 -14.26 16 12 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -25.35 13.29 55.43 0.74 -24.61 16 15 Si 0.90 21.19 29.54 -169.99 -5.02 16.16 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 C 0.12 1.45 5.17 -4.04 -0.02 1.42 16 20 C -0.05 -0.48 6.03 -29.52 -0.18 -0.66 16 21 C 0.22 2.46 15.44 -20.71 -0.32 2.14 16 22 N -0.45 -6.30 18.55 42.22 0.78 -5.52 16 23 C -0.09 -1.25 9.49 -39.55 -0.38 -1.62 16 24 C -0.03 -0.44 6.31 -39.50 -0.25 -0.69 16 25 Cl -0.08 -0.92 27.30 -51.86 -1.42 -2.33 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.68 6.90 -51.93 -0.36 0.32 16 28 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 29 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 31 H 0.10 0.86 7.16 -51.93 -0.37 0.48 16 32 H 0.10 1.04 7.34 -51.93 -0.38 0.65 16 33 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 34 H 0.05 1.23 7.42 -51.93 -0.39 0.85 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.09 1.28 8.07 -51.93 -0.42 0.86 16 37 H 0.08 0.76 6.43 -51.93 -0.33 0.43 16 38 H 0.11 0.77 7.24 -51.93 -0.38 0.39 16 39 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 365.13 15.07 5.50 5.50 Total: -1.00 -33.29 365.13 -8.18 -41.47 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -5.12 Total: -2.52 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -3.30 Total: -5.53 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 1.09 Total: -40.99 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.42 Total: -2.33 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.29 -8.18 -41.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930479415.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.943 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds