Wall clock time and date at job start Tue Mar 31 2020 12:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38236 * 120.00564 * 2 1 4 4 C 1.38221 * 120.01063 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.02645 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99358 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46869 * 90.00024 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.50697 * 109.46949 * 90.00203 * 10 9 7 12 12 H 1.08004 * 120.00186 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00081 * 180.02562 * 11 10 9 14 14 N 1.31519 * 120.00096 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00103 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47135 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47061 * 119.99902 * 15 13 11 18 18 H 1.48503 * 109.47075 * 240.00004 * 15 13 11 19 19 C 1.46506 * 120.00264 * 0.28128 * 9 7 6 20 20 C 1.52998 * 109.47320 * 89.99349 * 19 9 7 21 21 C 1.47196 * 109.47171 * 180.02562 * 20 19 9 22 22 N 9.37252 * 165.68978 * 308.46480 * 2 1 3 23 23 C 1.38190 * 120.01626 * 0.23503 * 5 4 3 24 24 C 1.38323 * 120.00374 * 179.97438 * 2 1 3 25 25 Cl 1.73598 * 120.01730 * 0.04541 * 24 2 1 26 26 H 1.09000 * 109.47334 * 89.99776 * 1 2 3 27 27 H 1.09001 * 109.46941 * 210.00453 * 1 2 3 28 28 H 1.09002 * 109.46766 * 329.99768 * 1 2 3 29 29 H 1.07997 * 119.99210 * 359.95694 * 3 2 1 30 30 H 1.07997 * 119.98347 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.47210 * 330.00318 * 6 5 4 32 32 H 1.08994 * 109.47551 * 209.99970 * 6 5 4 33 33 H 1.09001 * 109.47567 * 210.00057 * 10 9 7 34 34 H 1.09005 * 109.47076 * 330.00563 * 10 9 7 35 35 H 0.96991 * 119.99957 * 180.02562 * 14 13 11 36 36 H 1.08994 * 109.46996 * 209.99677 * 19 9 7 37 37 H 1.09001 * 109.46578 * 329.99540 * 19 9 7 38 38 H 1.08997 * 109.47106 * 300.00561 * 20 19 9 39 39 H 1.09004 * 109.46895 * 60.00075 * 20 19 9 40 40 H 1.07993 * 120.01193 * 179.74436 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2725 0.0002 0.0005 6 6 5.7795 0.0012 0.0005 7 6 6.2818 0.0016 1.4214 8 8 5.4936 0.0006 2.3432 9 7 7.6068 -0.0032 1.6677 10 6 8.0951 -0.0090 3.0489 11 6 8.2583 -1.4317 3.5180 12 1 8.0223 -2.2499 2.8536 13 6 8.7089 -1.6891 4.7955 14 7 8.9958 -0.6928 5.6048 15 14 8.9119 -3.4527 5.3767 16 1 8.5246 -4.3815 4.2847 17 1 10.3292 -3.6907 5.7503 18 1 8.0426 -3.6879 6.5575 19 6 8.5590 -0.0025 0.5542 20 6 8.8946 1.4403 0.1711 21 6 9.8508 1.4410 -0.9480 22 7 10.5887 1.4410 -1.8139 23 6 3.5826 -1.1971 -0.0049 24 6 2.1987 -1.1979 0.0005 25 17 1.3313 -2.7016 0.0000 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6583 2.1324 -0.0007 30 1 4.1202 2.1327 0.0001 31 1 6.1423 0.8915 -0.5133 32 1 6.1435 -0.8884 -0.5132 33 1 9.0569 0.5018 3.0965 34 1 7.3786 0.5050 3.6898 35 1 9.3132 -0.8739 6.5032 36 1 9.4699 -0.5199 0.8549 37 1 8.1171 -0.5123 -0.3019 38 1 7.9836 1.9577 -0.1294 39 1 9.3364 1.9501 1.0273 40 1 4.1231 -2.1320 -0.0091 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930479415.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:42 Heat of formation + Delta-G solvation = -20.697789 kcal Electronic energy + Delta-G solvation = -23665.841206 eV Core-core repulsion = 20084.329549 eV Total energy + Delta-G solvation = -3581.511657 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.103 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.09735 -39.98515 -37.92215 -37.40774 -36.61486 -34.98527 -34.53043 -32.11914 -31.64253 -30.96655 -28.96064 -26.47764 -25.26479 -24.34675 -23.73971 -21.95142 -19.91084 -18.78548 -18.30857 -17.88587 -17.42918 -16.96208 -16.78464 -16.23677 -16.05722 -15.73438 -15.57087 -15.03920 -14.73557 -14.61952 -14.32515 -14.26138 -13.80713 -13.60580 -13.49044 -13.44093 -13.24129 -13.14982 -12.94265 -12.70856 -12.63666 -12.56984 -12.43481 -12.24568 -12.16431 -12.08187 -11.76746 -11.63778 -11.61850 -10.58113 -10.57038 -9.71819 -9.43044 -9.38480 -8.17250 -6.28811 0.25211 0.35919 1.20363 1.38297 1.41489 1.51216 1.72934 1.88009 1.95670 2.31779 2.44834 2.74198 3.14027 3.23858 3.67646 3.85728 3.94621 4.02682 4.16623 4.16922 4.25920 4.34855 4.51029 4.59120 4.70287 4.74865 4.81335 4.84232 4.90038 4.99169 5.11329 5.15036 5.26046 5.32218 5.37733 5.50395 5.59350 5.64073 5.91092 5.95607 6.15324 6.65455 6.78297 6.85865 7.36793 7.57994 8.89434 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.009224 B = 0.003999 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3034.901188 B = 7000.575850 C = 9062.249323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.090 4.090 3 C -0.112 4.112 4 C -0.102 4.102 5 C -0.067 4.067 6 C -0.095 4.095 7 C 0.504 3.496 8 O -0.584 6.584 9 N -0.598 5.598 10 C 0.260 3.740 11 C -0.538 4.538 12 H 0.052 0.948 13 C 0.012 3.988 14 N -0.925 5.925 15 Si 0.954 3.046 16 H -0.269 1.269 17 H -0.273 1.273 18 H -0.286 1.286 19 C 0.112 3.888 20 C -0.038 4.038 21 C 0.246 3.754 22 N -0.492 5.492 23 C -0.112 4.112 24 C -0.053 4.053 25 Cl -0.077 7.077 26 H 0.086 0.914 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.158 0.842 30 H 0.150 0.850 31 H 0.144 0.856 32 H 0.122 0.878 33 H 0.034 0.966 34 H 0.003 0.997 35 H 0.265 0.735 36 H 0.081 0.919 37 H 0.110 0.890 38 H 0.142 0.858 39 H 0.119 0.881 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.258 4.731 -15.618 20.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.091 4.091 3 C -0.130 4.130 4 C -0.120 4.120 5 C -0.068 4.068 6 C -0.135 4.135 7 C 0.293 3.707 8 O -0.463 6.463 9 N -0.329 5.329 10 C 0.139 3.861 11 C -0.576 4.576 12 H 0.071 0.929 13 C -0.187 4.187 14 N -0.566 5.566 15 Si 0.779 3.221 16 H -0.193 1.193 17 H -0.198 1.198 18 H -0.213 1.213 19 C -0.013 4.013 20 C -0.079 4.079 21 C -0.071 4.071 22 N -0.170 5.170 23 C -0.131 4.131 24 C -0.080 4.080 25 Cl -0.048 7.048 26 H 0.105 0.895 27 H 0.083 0.917 28 H 0.104 0.896 29 H 0.175 0.825 30 H 0.168 0.832 31 H 0.161 0.839 32 H 0.140 0.860 33 H 0.052 0.948 34 H 0.021 0.979 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.128 0.872 38 H 0.160 0.840 39 H 0.137 0.863 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.564 4.625 -16.247 20.471 hybrid contribution 0.095 -1.301 1.402 1.915 sum -11.469 3.323 -14.845 19.051 Atomic orbital electron populations 1.20891 0.88920 1.03805 1.03597 1.20090 0.97927 0.91316 0.99788 1.21294 0.94127 0.97778 0.99780 1.21423 0.94721 0.98176 0.97701 1.19448 0.94988 0.92898 0.99432 1.20864 0.91602 1.07962 0.93024 1.21124 0.81875 0.75786 0.91869 1.90702 1.55973 1.51155 1.48497 1.48082 1.05392 1.71681 1.07720 1.18777 0.93852 0.95424 0.78066 1.21802 1.43501 0.93699 0.98644 0.92924 1.25685 0.95290 1.00926 0.96802 1.70022 1.46118 1.32559 1.07871 0.85573 0.77874 0.80471 0.78141 1.19295 1.19828 1.21252 1.21548 0.94624 0.95276 0.89857 1.19856 0.96590 0.99870 0.91563 1.29255 0.92912 0.91645 0.93285 1.81334 1.12146 1.10116 1.13443 1.21018 0.92408 0.99125 1.00543 1.20910 0.92367 0.87062 1.07631 1.98333 1.76830 1.32610 1.97033 0.89498 0.91684 0.89638 0.82472 0.83212 0.83859 0.86011 0.94778 0.97858 0.92646 0.90089 0.87227 0.84039 0.86323 0.85675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.89 9.62 71.24 0.69 -1.21 16 2 C -0.09 -1.98 5.88 -19.84 -0.12 -2.10 16 3 C -0.11 -2.19 9.70 22.27 0.22 -1.98 16 4 C -0.10 -2.15 9.70 22.27 0.22 -1.94 16 5 C -0.07 -1.63 4.37 -19.87 -0.09 -1.72 16 6 C -0.10 -2.01 4.38 29.10 0.13 -1.88 16 7 C 0.50 17.13 7.67 87.66 0.67 17.81 16 8 O -0.58 -26.92 15.61 -3.04 -0.05 -26.97 16 9 N -0.60 -20.29 2.46 -826.15 -2.03 -22.32 16 10 C 0.26 12.28 5.16 85.63 0.44 12.72 16 11 C -0.54 -28.80 9.39 25.60 0.24 -28.56 16 12 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 13 C 0.01 0.66 5.46 84.66 0.46 1.13 16 14 N -0.93 -53.52 13.29 21.45 0.28 -53.24 16 15 Si 0.95 43.77 29.54 68.60 2.03 45.80 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 19 C 0.11 2.49 5.17 86.38 0.45 2.93 16 20 C -0.04 -0.60 6.03 28.79 0.17 -0.42 16 21 C 0.25 4.92 15.44 89.42 1.38 6.30 16 22 N -0.49 -13.01 18.55 20.03 0.37 -12.64 16 23 C -0.11 -3.02 9.49 22.29 0.21 -2.81 16 24 C -0.05 -1.37 6.31 22.32 0.14 -1.23 16 25 Cl -0.08 -1.86 27.30 -2.72 -0.07 -1.94 16 26 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.06 1.16 6.90 -2.39 -0.02 1.14 16 28 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 29 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 30 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 31 H 0.14 1.72 7.16 -2.38 -0.02 1.70 16 32 H 0.12 2.07 7.34 -2.39 -0.02 2.06 16 33 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 34 H 0.00 0.18 7.42 -2.38 -0.02 0.17 16 35 H 0.26 14.49 8.31 -92.72 -0.77 13.72 16 36 H 0.08 2.07 8.07 -2.39 -0.02 2.05 16 37 H 0.11 1.75 6.43 -2.39 -0.02 1.74 16 38 H 0.14 1.33 7.24 -2.39 -0.02 1.32 16 39 H 0.12 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.13 3.34 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -75.98 365.13 6.80 -69.18 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: 1.06 Total: 5.06 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 5.21 Total: -2.94 kcal Atomic # 7 Polarization: -86.82 SS G_CDS: -1.37 Total: -88.19 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.05 Total: -26.97 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 17 Polarization: -1.86 SS G_CDS: -0.07 Total: -1.94 kcal Total: -75.98 6.80 -69.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930479415.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.479 kcal (2) G-P(sol) polarization free energy of solvation -75.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds