Wall clock time and date at job start Tue Mar 31 2020 12:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38363 * 119.91850 * 2 1 4 4 C 1.38446 * 120.27504 * 179.97438 * 3 2 1 5 5 Cl 1.73606 * 119.93963 * 180.02562 * 4 3 2 6 6 C 1.38094 * 120.12275 * 0.04006 * 4 3 2 7 7 C 1.39543 * 119.83741 * 359.97438 * 6 4 3 8 8 C 1.47846 * 120.13650 * 180.02562 * 7 6 4 9 9 O 1.21559 * 119.99685 * 180.02562 * 8 7 6 10 10 N 1.34770 * 120.00238 * 0.02562 * 8 7 6 11 11 C 1.46501 * 119.99869 * 179.97438 * 10 8 7 12 12 H 1.09004 * 115.51967 * 9.41786 * 11 10 8 13 13 C 1.52999 * 117.44248 * 223.99968 * 11 10 8 14 14 H 1.08999 * 119.54039 * 4.11624 * 13 11 10 15 15 C 1.54386 * 118.12367 * 160.81179 * 13 11 10 16 16 N 1.48151 * 104.61836 * 87.19069 * 15 13 11 17 17 C 1.36936 * 127.83665 * 140.41552 * 16 15 13 18 18 H 1.08000 * 120.00385 * 344.90175 * 17 16 15 19 19 C 1.38813 * 119.99776 * 164.89911 * 17 16 15 20 20 N 1.31619 * 120.00334 * 350.66775 * 19 17 16 21 21 Si 1.86805 * 119.99971 * 170.66006 * 19 17 16 22 22 H 1.48499 * 109.46809 * 90.00062 * 21 19 17 23 23 H 1.48499 * 109.47117 * 210.00320 * 21 19 17 24 24 H 1.48503 * 109.47129 * 330.00557 * 21 19 17 25 25 C 1.51686 * 104.54908 * 320.18998 * 16 15 13 26 26 C 1.53004 * 117.43998 * 154.83110 * 11 10 8 27 27 H 1.08993 * 119.54185 * 355.88218 * 26 11 10 28 28 C 1.37939 * 119.91985 * 179.72586 * 2 1 3 29 29 H 1.09000 * 109.47155 * 89.99818 * 1 2 3 30 30 H 1.09000 * 109.46890 * 210.00637 * 1 2 3 31 31 H 1.09008 * 109.47004 * 330.00121 * 1 2 3 32 32 H 1.08002 * 119.85788 * 359.97438 * 3 2 1 33 33 H 1.07997 * 120.08311 * 179.97438 * 6 4 3 34 34 H 0.96999 * 120.00535 * 359.97438 * 10 8 7 35 35 H 1.08999 * 110.40983 * 205.97813 * 15 13 11 36 36 H 1.08999 * 110.40802 * 328.41072 * 15 13 11 37 37 H 0.96995 * 120.00273 * 180.02562 * 20 19 17 38 38 H 1.08999 * 111.96701 * 281.12942 * 25 16 15 39 39 H 1.09003 * 110.49714 * 157.55165 * 25 16 15 40 40 H 1.07998 * 120.05851 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1992 0.0000 4 6 3.5816 1.2079 0.0005 5 17 4.4387 2.7176 0.0012 6 6 4.2821 0.0177 0.0002 7 6 3.5910 -1.1946 -0.0001 8 6 4.3343 -2.4726 0.0002 9 8 3.7297 -3.5272 -0.0005 10 7 5.6820 -2.4684 0.0012 11 6 6.4184 -3.7349 0.0020 12 1 5.8157 -4.6287 -0.1592 13 6 7.6165 -3.8533 0.9462 14 1 7.8453 -3.0353 1.6293 15 6 8.1228 -5.2668 1.3058 16 7 9.0834 -5.6048 0.2297 17 6 10.2809 -6.2583 0.3476 18 1 10.7383 -6.3767 1.3187 19 6 10.9071 -6.7686 -0.7813 20 7 10.2715 -6.7897 -1.9337 21 14 12.6520 -7.4254 -0.6650 22 1 12.6150 -8.8729 -0.3355 23 1 13.3417 -7.2313 -1.9657 24 1 13.3863 -6.6942 0.3987 25 6 8.4412 -5.0698 -1.0362 26 6 7.8357 -3.7268 -0.5744 27 1 8.2277 -2.8146 -1.0241 28 6 2.1951 -1.1955 0.0057 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5139 32 1 1.6535 2.1324 -0.0004 33 1 5.3620 0.0252 0.0002 34 1 6.1644 -1.6269 0.0014 35 1 8.6244 -5.2561 2.2734 36 1 7.2955 -5.9764 1.3133 37 1 10.7089 -7.1466 -2.7224 38 1 7.6589 -5.7317 -1.4076 39 1 9.1953 -4.9023 -1.8052 40 1 1.6547 -2.1306 0.0106 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961152236.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:21 Heat of formation + Delta-G solvation = 23.792898 kcal Electronic energy + Delta-G solvation = -23229.096352 eV Core-core repulsion = 19649.513955 eV Total energy + Delta-G solvation = -3579.582397 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.103 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.55825 -40.35726 -39.33530 -37.51922 -36.08403 -34.68847 -33.65646 -32.24212 -31.70946 -28.92794 -28.07457 -27.59278 -25.45766 -23.34400 -22.99724 -22.02493 -21.33533 -20.82220 -18.94931 -18.75459 -17.87728 -17.21420 -16.78094 -16.41522 -16.29035 -16.13131 -15.58141 -15.27902 -14.93194 -14.82792 -14.63218 -14.25961 -13.74036 -13.71827 -13.34959 -13.27559 -13.26373 -12.90809 -12.73761 -12.71460 -12.54638 -12.28735 -12.16142 -12.06810 -12.02300 -11.87314 -11.65837 -11.23085 -10.85694 -10.73144 -10.09811 -9.77150 -9.73930 -8.93466 -7.91196 -5.26507 -0.38368 0.04828 1.01612 1.47214 1.48592 1.58135 1.58999 1.81279 2.48627 2.54984 2.86407 3.28074 3.39033 3.52903 3.60810 3.79184 3.87043 3.97832 4.04229 4.10476 4.14654 4.22968 4.35520 4.48275 4.54216 4.73540 4.78393 4.84881 4.87018 4.98047 4.98380 5.10207 5.18248 5.25168 5.35602 5.38417 5.43114 5.48973 5.62710 5.63556 6.12154 6.36768 6.95486 7.03046 7.65162 8.44811 9.23499 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.023569 B = 0.002378 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.717732 B =11770.510775 C =12522.683335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.076 4.076 3 C -0.081 4.081 4 C -0.044 4.044 5 Cl -0.058 7.058 6 C -0.084 4.084 7 C -0.127 4.127 8 C 0.561 3.439 9 O -0.573 6.573 10 N -0.677 5.677 11 C 0.114 3.886 12 H 0.109 0.891 13 C -0.164 4.164 14 H 0.136 0.864 15 C 0.151 3.849 16 N -0.622 5.622 17 C -0.238 4.238 18 H 0.082 0.918 19 C -0.065 4.065 20 N -0.949 5.949 21 Si 0.981 3.019 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.268 1.268 25 C 0.187 3.813 26 C -0.175 4.175 27 H 0.127 0.873 28 C -0.068 4.068 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.163 0.837 33 H 0.150 0.850 34 H 0.415 0.585 35 H 0.064 0.936 36 H 0.018 0.982 37 H 0.250 0.750 38 H 0.006 0.994 39 H 0.062 0.938 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.495 22.129 4.517 29.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.077 4.077 3 C -0.100 4.100 4 C -0.071 4.071 5 Cl -0.029 7.029 6 C -0.103 4.103 7 C -0.130 4.130 8 C 0.350 3.650 9 O -0.453 6.453 10 N -0.327 5.327 11 C 0.007 3.993 12 H 0.127 0.873 13 C -0.185 4.185 14 H 0.154 0.846 15 C 0.025 3.975 16 N -0.347 5.347 17 C -0.367 4.367 18 H 0.100 0.900 19 C -0.258 4.258 20 N -0.597 5.597 21 Si 0.808 3.192 22 H -0.213 1.213 23 H -0.219 1.219 24 H -0.192 1.192 25 C 0.063 3.937 26 C -0.196 4.196 27 H 0.145 0.855 28 C -0.087 4.087 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.181 0.819 33 H 0.168 0.832 34 H 0.254 0.746 35 H 0.083 0.917 36 H 0.036 0.964 37 H 0.059 0.941 38 H 0.024 0.976 39 H 0.080 0.920 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -18.630 21.398 4.417 28.714 hybrid contribution 1.458 -0.412 -0.313 1.547 sum -17.172 20.986 4.103 27.425 Atomic orbital electron populations 1.20914 0.87761 1.04519 1.03937 1.20117 0.98245 0.91065 0.98236 1.21470 0.91624 0.99839 0.97050 1.20851 0.93146 0.87228 1.05838 1.98399 1.77105 1.30492 1.96922 1.21279 1.01128 0.89791 0.98115 1.19666 0.94653 0.91433 1.07278 1.18546 0.81984 0.89117 0.75352 1.90776 1.69051 1.34016 1.51447 1.45098 1.05574 1.08628 1.73407 1.21456 0.87122 0.88019 1.02712 0.87288 1.24281 1.00716 0.99887 0.93603 0.84592 1.21201 0.91632 0.92135 0.92515 1.46347 1.19027 1.66324 1.03011 1.19403 0.94968 1.27921 0.94410 0.89981 1.25728 1.03073 1.01060 0.95935 1.70080 1.37629 1.51772 1.00236 0.85059 0.79319 0.77966 0.76817 1.21317 1.21913 1.19230 1.21421 0.93977 0.88781 0.89571 1.24272 0.96828 1.00813 0.97673 0.85534 1.21402 0.92321 0.99579 0.95397 0.89553 0.90627 0.89184 0.81935 0.83218 0.74612 0.91748 0.96426 0.94121 0.97613 0.92004 0.84611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 71.24 0.71 -0.16 16 2 C -0.08 -1.01 5.87 -19.90 -0.12 -1.13 16 3 C -0.08 -0.98 9.47 22.35 0.21 -0.77 16 4 C -0.04 -0.65 6.31 22.29 0.14 -0.51 16 5 Cl -0.06 -0.81 28.95 -2.72 -0.08 -0.88 16 6 C -0.08 -1.40 9.32 22.55 0.21 -1.19 16 7 C -0.13 -2.69 5.87 -20.09 -0.12 -2.81 16 8 C 0.56 15.73 7.77 86.79 0.67 16.40 16 9 O -0.57 -20.81 15.91 -3.90 -0.06 -20.87 16 10 N -0.68 -17.35 5.51 -445.40 -2.46 -19.81 16 11 C 0.11 3.75 5.97 44.99 0.27 4.02 16 12 H 0.11 4.24 7.40 -2.39 -0.02 4.23 16 13 C -0.16 -5.53 7.05 -9.93 -0.07 -5.60 16 14 H 0.14 3.78 8.14 -2.39 -0.02 3.76 16 15 C 0.15 6.34 7.05 86.53 0.61 6.95 16 16 N -0.62 -32.36 3.45 -678.55 -2.34 -34.70 16 17 C -0.24 -13.41 10.36 84.03 0.87 -12.54 16 18 H 0.08 4.40 7.85 -2.91 -0.02 4.38 16 19 C -0.06 -3.68 5.41 84.86 0.46 -3.22 16 20 N -0.95 -57.34 10.84 21.65 0.23 -57.11 16 21 Si 0.98 45.59 29.56 68.60 2.03 47.61 16 22 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 C 0.19 9.23 5.91 85.83 0.51 9.74 16 26 C -0.18 -6.39 6.96 -9.93 -0.07 -6.46 16 27 H 0.13 4.03 8.14 -2.39 -0.02 4.01 16 28 C -0.07 -1.29 9.24 22.53 0.21 -1.08 16 29 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.58 8.08 -2.39 -0.02 0.56 16 31 H 0.09 0.37 8.08 -2.38 -0.02 0.35 16 32 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 33 H 0.15 1.98 6.40 -2.91 -0.02 1.96 16 34 H 0.42 7.82 6.86 -92.71 -0.64 7.18 16 35 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 38 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.06 3.40 6.58 -2.39 -0.02 3.39 16 40 H 0.14 2.74 7.65 -2.91 -0.02 2.72 16 Total: -1.00 -71.23 352.28 2.27 -68.96 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.44 Total: 15.15 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 4.50 Total: 1.64 kcal Atomic # 7 Polarization: -107.05 SS G_CDS: -4.56 Total: -111.61 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.06 Total: -20.87 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.88 kcal Total: -71.23 2.27 -68.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961152236.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.758 kcal (2) G-P(sol) polarization free energy of solvation -71.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds