Wall clock time and date at job start Tue Mar 31 2020 12:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34219 * 125.76993 * 2 1 4 4 N 1.39127 * 107.11042 * 180.02562 * 3 2 1 5 5 C 1.36238 * 139.29308 * 180.32845 * 4 3 2 6 6 C 1.33012 * 116.10463 * 180.10082 * 5 4 3 7 7 C 1.46868 * 125.22294 * 179.84868 * 6 5 4 8 8 O 1.21672 * 119.99879 * 359.71226 * 7 6 5 9 9 N 1.34777 * 120.00191 * 179.71615 * 7 6 5 10 10 C 1.46498 * 120.00149 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.89078 * 31.11340 * 10 9 7 12 12 C 1.55155 * 111.00650 * 155.00189 * 10 9 7 13 13 C 1.54322 * 102.94686 * 82.60740 * 12 10 9 14 14 N 1.47027 * 107.26711 * 22.19452 * 13 12 10 15 15 C 1.36933 * 125.64361 * 181.02428 * 14 13 12 16 16 H 1.08008 * 119.99841 * 173.95405 * 15 14 13 17 17 C 1.38807 * 120.00636 * 353.95412 * 15 14 13 18 18 N 1.31619 * 119.99583 * 6.85877 * 17 15 14 19 19 Si 1.86796 * 120.00502 * 186.85860 * 17 15 14 20 20 H 1.48495 * 109.47358 * 94.98334 * 19 17 15 21 21 H 1.48506 * 109.47418 * 214.98538 * 19 17 15 22 22 H 1.48506 * 109.46851 * 334.98270 * 19 17 15 23 23 C 1.47420 * 108.70308 * 1.28479 * 14 13 12 24 24 S 1.75797 * 109.54912 * 359.57730 * 6 5 4 25 25 C 1.35447 * 106.45693 * 0.02562 * 4 3 2 26 26 N 1.32269 * 108.77855 * 0.02562 * 25 4 3 27 27 H 1.09003 * 109.47419 * 89.99168 * 1 2 3 28 28 H 1.08999 * 109.47421 * 209.99889 * 1 2 3 29 29 H 1.09003 * 109.46632 * 329.99416 * 1 2 3 30 30 H 1.07994 * 126.44603 * 359.97218 * 3 2 1 31 31 H 1.07996 * 121.94398 * 359.92285 * 5 4 3 32 32 H 0.96997 * 119.99732 * 359.97438 * 9 7 6 33 33 H 1.08999 * 110.71565 * 324.24367 * 12 10 9 34 34 H 1.09004 * 110.87370 * 201.04725 * 12 10 9 35 35 H 1.09003 * 109.87979 * 262.78270 * 13 12 10 36 36 H 1.08993 * 110.01458 * 141.68109 * 13 12 10 37 37 H 0.97005 * 119.99957 * 180.02562 * 18 17 15 38 38 H 1.09010 * 110.36379 * 94.48476 * 23 14 13 39 39 H 1.09000 * 110.36819 * 216.79835 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2915 1.0890 0.0000 4 7 3.6097 0.6439 -0.0006 5 6 4.8724 1.1553 0.0042 6 6 5.8633 0.2679 -0.0015 7 6 7.2947 0.5965 -0.0011 8 8 7.6519 1.7596 -0.0005 9 7 8.2127 -0.3903 -0.0015 10 6 9.6405 -0.0625 -0.0017 11 1 9.8244 0.8741 0.5247 12 6 10.4765 -1.2176 0.6100 13 6 10.6416 -2.1907 -0.5763 14 7 10.4483 -1.4130 -1.8089 15 6 10.4940 -1.9125 -3.0831 16 1 10.2426 -1.2788 -3.9208 17 6 10.8635 -3.2331 -3.2981 18 7 11.0387 -4.0423 -2.2750 19 14 11.1121 -3.8618 -5.0394 20 1 12.5504 -3.7720 -5.3976 21 1 10.6686 -5.2766 -5.1230 22 1 10.3147 -3.0367 -5.9821 23 6 10.2034 -0.0052 -1.4461 24 16 5.1963 -1.3586 -0.0018 25 6 3.5576 -0.7096 -0.0015 26 7 2.2899 -1.0869 -0.0021 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5140 30 1 1.9617 2.1174 -0.0004 31 1 5.0581 2.2192 0.0093 32 1 7.9280 -1.3175 -0.0017 33 1 9.9354 -1.6943 1.4274 34 1 11.4469 -0.8566 0.9507 35 1 9.8926 -2.9804 -0.5149 36 1 11.6408 -2.6260 -0.5655 37 1 11.2973 -4.9651 -2.4252 38 1 11.1350 0.5604 -1.4706 39 1 9.4714 0.4386 -2.1208 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014713098.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:31 Heat of formation + Delta-G solvation = 71.804531 kcal Electronic energy + Delta-G solvation = -23846.593776 eV Core-core repulsion = 20303.429778 eV Total energy + Delta-G solvation = -3543.163998 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.85337 -41.13484 -39.04099 -37.65783 -35.51500 -33.78377 -32.45319 -32.03047 -30.99918 -29.18755 -27.99623 -26.52276 -25.66859 -23.57878 -21.99232 -21.98190 -21.45675 -20.97737 -19.71879 -18.93193 -17.99484 -17.51914 -17.41349 -17.01329 -16.65805 -16.16413 -15.88217 -15.65555 -15.43655 -14.96853 -14.58915 -14.27329 -14.01019 -13.96850 -13.84913 -13.58283 -13.16183 -12.92982 -12.82190 -12.55809 -12.50332 -12.31345 -12.13861 -12.02109 -11.80208 -11.71134 -11.60248 -11.39215 -11.35405 -10.70786 -10.26979 -9.87394 -8.87359 -8.84791 -7.86145 -5.18781 -0.70247 -0.37807 0.34464 0.81688 1.19860 1.46172 1.47041 1.55542 1.64857 1.86113 2.07756 2.49399 3.16753 3.33323 3.49455 3.54829 3.67135 3.80474 4.00255 4.05025 4.14478 4.30239 4.31936 4.65539 4.72389 4.80122 4.84835 4.87377 4.88430 4.95901 5.00722 5.04446 5.41641 5.44081 5.46494 5.67726 5.68119 5.77427 6.20473 6.28824 6.53811 6.88829 7.12181 7.78102 8.41862 9.24241 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.016413 B = 0.003292 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.523099 B = 8502.250438 C = 9470.901865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.029 3.971 3 C -0.044 4.044 4 N -0.408 5.408 5 C 0.145 3.855 6 C -0.263 4.263 7 C 0.606 3.394 8 O -0.552 6.552 9 N -0.694 5.694 10 C 0.141 3.859 11 H 0.117 0.883 12 C -0.135 4.135 13 C 0.180 3.820 14 N -0.622 5.622 15 C -0.240 4.240 16 H 0.074 0.926 17 C -0.058 4.058 18 N -0.943 5.943 19 Si 0.970 3.030 20 H -0.288 1.288 21 H -0.294 1.294 22 H -0.273 1.273 23 C 0.121 3.879 24 S 0.220 5.780 25 C 0.116 3.884 26 N -0.487 5.487 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.229 0.771 31 H 0.221 0.779 32 H 0.403 0.597 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.015 0.985 36 H 0.014 0.986 37 H 0.247 0.753 38 H 0.040 0.960 39 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.125 11.642 9.225 22.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.100 4.100 3 C -0.173 4.173 4 N -0.087 5.087 5 C 0.009 3.991 6 C -0.385 4.385 7 C 0.391 3.609 8 O -0.432 6.432 9 N -0.342 5.342 10 C 0.036 3.964 11 H 0.135 0.865 12 C -0.173 4.173 13 C 0.055 3.945 14 N -0.348 5.348 15 C -0.369 4.369 16 H 0.092 0.908 17 C -0.252 4.252 18 N -0.592 5.592 19 Si 0.799 3.201 20 H -0.215 1.215 21 H -0.221 1.221 22 H -0.198 1.198 23 C -0.006 4.006 24 S 0.471 5.529 25 C -0.250 4.250 26 N -0.213 5.213 27 H 0.103 0.897 28 H 0.089 0.911 29 H 0.123 0.877 30 H 0.245 0.755 31 H 0.237 0.763 32 H 0.238 0.762 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.033 0.967 36 H 0.032 0.968 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -16.535 10.213 9.122 21.470 hybrid contribution 0.082 0.694 -1.202 1.390 sum -16.454 10.907 7.920 21.270 Atomic orbital electron populations 1.20271 0.83646 1.04546 1.03902 1.21615 0.98631 0.87071 1.02720 1.23397 0.77306 1.02846 1.13799 1.43883 1.06612 1.07414 1.50795 1.20841 0.79531 1.02340 0.96348 1.23335 0.97792 0.97788 1.19586 1.16561 0.82964 0.85220 0.76135 1.90813 1.80968 1.19316 1.52135 1.45693 1.06482 1.09165 1.72886 1.22162 0.78308 0.99737 0.96222 0.86485 1.23105 1.00707 0.95658 0.97873 1.21000 0.98106 0.91786 0.83600 1.44707 1.84322 1.03587 1.02232 1.19320 1.38539 0.95050 0.84008 0.90817 1.25522 1.02085 0.96719 1.00838 1.70146 1.54348 1.05070 1.29632 0.85185 0.77646 0.77143 0.80114 1.21547 1.22062 1.19773 1.22149 0.97350 0.86432 0.94627 1.85102 0.86097 1.00899 1.80793 1.26642 1.00829 0.85191 1.12298 1.70488 0.97128 1.31518 1.22144 0.89713 0.91089 0.87654 0.75460 0.76286 0.76156 0.88862 0.88455 0.96719 0.96774 0.94349 0.94224 0.95056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.41 71.24 0.74 -0.04 16 2 C 0.03 0.58 7.05 41.32 0.29 0.88 16 3 C -0.04 -0.75 11.92 82.62 0.99 0.23 16 4 N -0.41 -9.17 3.15 -354.87 -1.12 -10.28 16 5 C 0.14 3.08 10.94 82.84 0.91 3.99 16 6 C -0.26 -6.67 6.34 23.36 0.15 -6.52 16 7 C 0.61 17.86 7.79 86.50 0.67 18.53 16 8 O -0.55 -18.22 16.39 -4.26 -0.07 -18.29 16 9 N -0.69 -21.23 5.20 -439.38 -2.28 -23.51 16 10 C 0.14 4.50 3.43 46.46 0.16 4.66 16 11 H 0.12 3.35 7.54 -2.39 -0.02 3.33 16 12 C -0.13 -4.30 6.54 31.78 0.21 -4.09 16 13 C 0.18 8.20 5.37 86.73 0.47 8.67 16 14 N -0.62 -30.60 3.39 -691.54 -2.35 -32.94 16 15 C -0.24 -13.26 10.26 84.03 0.86 -12.40 16 16 H 0.07 4.00 7.84 -2.91 -0.02 3.98 16 17 C -0.06 -3.24 5.48 84.86 0.47 -2.78 16 18 N -0.94 -55.01 10.36 21.65 0.22 -54.79 16 19 Si 0.97 45.59 29.56 68.60 2.03 47.62 16 20 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 21 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 22 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 23 C 0.12 4.83 6.95 86.93 0.60 5.44 16 24 S 0.22 5.75 22.41 -56.49 -1.27 4.48 16 25 C 0.12 3.18 8.92 179.61 1.60 4.78 16 26 N -0.49 -13.82 11.32 -184.70 -2.09 -15.91 16 27 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.23 1.69 8.06 -2.91 -0.02 1.67 16 31 H 0.22 3.45 7.97 -2.91 -0.02 3.43 16 32 H 0.40 12.35 7.77 -92.71 -0.72 11.63 16 33 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.01 0.74 7.55 -2.39 -0.02 0.72 16 36 H 0.01 0.73 7.36 -2.39 -0.02 0.72 16 37 H 0.25 14.10 8.31 -92.70 -0.77 13.33 16 38 H 0.04 1.54 8.14 -2.38 -0.02 1.53 16 39 H 0.03 1.31 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -72.13 343.87 1.56 -70.57 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 0.37 Total: 11.71 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: 8.11 Total: 21.35 kcal Atomic # 7 Polarization: -129.83 SS G_CDS: -7.61 Total: -137.44 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.07 Total: -18.29 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Atomic # 16 Polarization: 5.75 SS G_CDS: -1.27 Total: 4.48 kcal Total: -72.13 1.56 -70.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014713098.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.370 kcal (2) G-P(sol) polarization free energy of solvation -72.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds