Wall clock time and date at job start Tue Mar 31 2020 12:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32508 * 126.05338 * 2 1 4 4 C 1.33094 * 109.78403 * 180.28563 * 3 2 1 5 5 S 1.76379 * 141.32189 * 179.72261 * 4 3 2 6 6 C 1.75800 * 90.62980 * 179.97438 * 5 4 3 7 7 C 1.31079 * 109.60361 * 359.97438 * 6 5 4 8 8 N 1.34209 * 109.45968 * 359.69157 * 4 3 2 9 9 C 1.37903 * 126.05833 * 179.77761 * 2 1 3 10 10 C 1.41696 * 126.82904 * 0.02562 * 9 2 1 11 11 O 1.21783 * 120.00216 * 359.68554 * 10 9 2 12 12 N 1.34781 * 119.99821 * 179.68153 * 10 9 2 13 13 C 1.46502 * 119.99775 * 179.97438 * 12 10 9 14 14 H 1.08994 * 110.89214 * 328.88522 * 13 12 10 15 15 C 1.55157 * 111.00387 * 205.00236 * 13 12 10 16 16 C 1.54329 * 102.94410 * 206.42804 * 15 13 12 17 17 N 1.47018 * 107.26830 * 22.18949 * 16 15 13 18 18 C 1.36934 * 125.64878 * 181.02101 * 17 16 15 19 19 H 1.08004 * 120.00294 * 168.97475 * 18 17 16 20 20 C 1.38809 * 119.99876 * 348.97978 * 18 17 16 21 21 N 1.31628 * 120.00324 * 165.60399 * 20 18 17 22 22 Si 1.86803 * 120.00087 * 345.60462 * 20 18 17 23 23 H 1.48506 * 109.47180 * 185.29112 * 22 20 18 24 24 H 1.48499 * 109.47162 * 305.29525 * 22 20 18 25 25 H 1.48508 * 109.47026 * 65.29607 * 22 20 18 26 26 C 1.47432 * 108.70623 * 1.29296 * 17 16 15 27 27 H 1.09002 * 109.47388 * 270.21724 * 1 2 3 28 28 H 1.09003 * 109.47259 * 30.21772 * 1 2 3 29 29 H 1.08997 * 109.46805 * 150.21702 * 1 2 3 30 30 H 1.08002 * 125.19755 * 180.02562 * 6 5 4 31 31 H 1.08001 * 121.86378 * 179.97438 * 7 6 5 32 32 H 0.97000 * 120.00361 * 0.02562 * 12 10 9 33 33 H 1.08997 * 110.71978 * 88.06046 * 15 13 12 34 34 H 1.08996 * 110.72308 * 324.78780 * 15 13 12 35 35 H 1.08998 * 109.87692 * 262.77743 * 16 15 13 36 36 H 1.08994 * 109.88159 * 141.61102 * 16 15 13 37 37 H 0.96993 * 119.99395 * 354.92976 * 21 20 18 38 38 H 1.08999 * 110.36614 * 94.48084 * 26 17 16 39 39 H 1.08996 * 110.36422 * 216.80343 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0713 0.0000 4 6 3.5645 0.6984 -0.0062 5 16 5.1951 1.3708 -0.0162 6 6 5.8831 -0.2470 -0.0163 7 6 4.9189 -1.1349 -0.0089 8 7 3.6392 -0.6416 -0.0037 9 6 2.3187 -1.1148 0.0043 10 6 1.9018 -2.4690 0.0091 11 8 0.7146 -2.7407 0.0154 12 7 2.8191 -3.4566 0.0065 13 6 2.3880 -4.8567 0.0120 14 1 1.4432 -4.9704 0.5434 15 6 3.4821 -5.7731 0.6205 16 6 3.2039 -7.1354 -0.0493 17 7 2.4585 -6.8685 -1.2880 18 6 2.0021 -7.8162 -2.1647 19 1 1.3148 -7.5388 -2.9504 20 6 2.4227 -9.1335 -2.0437 21 7 1.7855 -10.0896 -2.6860 22 14 3.8931 -9.5495 -0.9693 23 1 4.2155 -10.9925 -1.1084 24 1 5.0619 -8.7380 -1.3939 25 1 3.5707 -9.2490 0.4489 26 6 2.2895 -5.4111 -1.4335 27 1 -0.3634 0.0039 1.0277 28 1 -0.3634 0.8880 -0.5172 29 1 -0.3633 -0.8919 -0.5105 30 1 6.9389 -0.4744 -0.0210 31 1 5.1209 -2.1959 -0.0080 32 1 3.7646 -3.2402 0.0018 33 1 3.3676 -5.8445 1.7021 34 1 4.4768 -5.4114 0.3601 35 1 2.6070 -7.7600 0.6153 36 1 4.1452 -7.6327 -0.2828 37 1 0.9790 -9.8848 -3.1844 38 1 3.0829 -4.9975 -2.0559 39 1 1.3131 -5.1834 -1.8610 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014936804.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:47 Heat of formation + Delta-G solvation = 80.995509 kcal Electronic energy + Delta-G solvation = -24425.684193 eV Core-core repulsion = 20882.918745 eV Total energy + Delta-G solvation = -3542.765448 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.02118 -40.95744 -39.26736 -38.01669 -35.82110 -34.26925 -32.41042 -32.38369 -31.16010 -29.76361 -28.27231 -26.04338 -25.57067 -23.84618 -22.76176 -21.91164 -21.61421 -21.56465 -19.79669 -19.42451 -18.14179 -17.67063 -17.63358 -17.02327 -16.61913 -16.31375 -15.86819 -15.73110 -15.49093 -15.33914 -14.76435 -14.40259 -14.35225 -14.15164 -14.06474 -13.81985 -13.36715 -13.22299 -13.09098 -12.66056 -12.58785 -12.43425 -12.33136 -11.83868 -11.68863 -11.62954 -11.43960 -11.16462 -11.05927 -10.74670 -10.36809 -9.93509 -9.15327 -8.91112 -8.70315 -5.53830 -0.62544 -0.37961 0.50239 0.71844 1.22515 1.31205 1.40020 1.51384 1.73165 1.91732 2.11161 2.56102 3.08633 3.12103 3.28898 3.37176 3.47942 3.68631 3.77800 3.97600 4.02171 4.17985 4.26336 4.40890 4.44919 4.63738 4.65325 4.70830 4.74572 4.76076 4.79717 4.87707 4.95173 5.10637 5.29002 5.33699 5.49471 5.55175 6.04458 6.20405 6.43768 6.77546 6.96845 7.36795 8.01946 8.82243 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.020797 B = 0.003257 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.007823 B = 8594.717780 C = 9521.774667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.143 3.857 3 N -0.496 5.496 4 C 0.136 3.864 5 S 0.258 5.742 6 C -0.179 4.179 7 C 0.005 3.995 8 N -0.380 5.380 9 C -0.130 4.130 10 C 0.598 3.402 11 O -0.559 6.559 12 N -0.705 5.705 13 C 0.145 3.855 14 H 0.088 0.912 15 C -0.116 4.116 16 C 0.098 3.902 17 N -0.631 5.631 18 C -0.319 4.319 19 H 0.037 0.963 20 C -0.081 4.081 21 N -0.963 5.963 22 Si 1.114 2.886 23 H -0.313 1.313 24 H -0.275 1.275 25 H -0.244 1.244 26 C 0.127 3.873 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.251 0.749 31 H 0.206 0.794 32 H 0.405 0.595 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.041 0.959 36 H 0.038 0.962 37 H 0.246 0.754 38 H 0.034 0.966 39 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.363 25.805 11.254 31.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.002 3.998 3 N -0.220 5.220 4 C -0.228 4.228 5 S 0.509 5.491 6 C -0.315 4.315 7 C -0.123 4.123 8 N -0.058 5.058 9 C -0.245 4.245 10 C 0.388 3.612 11 O -0.439 6.439 12 N -0.358 5.358 13 C 0.039 3.961 14 H 0.106 0.894 15 C -0.154 4.154 16 C -0.026 4.026 17 N -0.359 5.359 18 C -0.447 4.447 19 H 0.055 0.945 20 C -0.273 4.273 21 N -0.606 5.606 22 Si 0.940 3.060 23 H -0.242 1.242 24 H -0.202 1.202 25 H -0.169 1.169 26 C 0.000 4.000 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.267 0.733 31 H 0.222 0.778 32 H 0.244 0.756 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 14.810 26.341 11.682 32.399 hybrid contribution -1.731 -1.189 -1.423 2.537 sum 13.080 25.152 10.259 30.149 Atomic orbital electron populations 1.20412 0.84501 1.04217 1.04241 1.21766 0.97715 0.85881 0.94453 1.70274 0.97384 1.29869 1.24506 1.27296 1.02062 0.85081 1.08395 1.84941 0.82724 1.03651 1.77803 1.25950 1.05847 0.93577 1.06175 1.20962 0.79325 1.03613 1.08418 1.43787 1.05839 1.07766 1.48450 1.20050 0.81286 0.95155 1.28035 1.15635 0.85869 0.83387 0.76313 1.90857 1.17113 1.83650 1.52279 1.45746 1.09639 1.05144 1.75259 1.21948 0.99331 0.79377 0.95444 0.89401 1.22859 0.98930 0.92047 1.01554 1.22215 0.94844 0.98089 0.87460 1.44748 1.66557 1.01559 1.23068 1.20051 1.23919 0.90276 1.10494 0.94531 1.27407 1.06278 0.90850 1.02728 1.71007 1.19382 1.33789 1.36456 0.83385 0.72837 0.73375 0.76387 1.24244 1.20246 1.16850 1.21991 0.97919 0.83913 0.96158 0.89057 0.89126 0.90016 0.73285 0.77782 0.75638 0.87074 0.87569 0.94125 0.94488 0.94564 0.94834 0.96240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.83 9.84 71.24 0.70 -1.13 16 2 C 0.14 3.94 7.16 42.38 0.30 4.24 16 3 N -0.50 -13.30 11.25 -183.22 -2.06 -15.36 16 4 C 0.14 2.88 8.89 179.75 1.60 4.48 16 5 S 0.26 2.58 23.38 -56.49 -1.32 1.26 16 6 C -0.18 -0.81 11.13 67.70 0.75 -0.05 16 7 C 0.00 0.05 10.44 83.74 0.87 0.92 16 8 N -0.38 -7.66 3.19 -347.68 -1.11 -8.77 16 9 C -0.13 -3.51 6.94 38.56 0.27 -3.24 16 10 C 0.60 18.04 7.60 85.09 0.65 18.68 16 11 O -0.56 -20.80 14.33 -4.61 -0.07 -20.86 16 12 N -0.70 -17.82 5.18 -444.42 -2.30 -20.12 16 13 C 0.15 4.56 3.44 46.46 0.16 4.72 16 14 H 0.09 3.14 7.54 -2.39 -0.02 3.12 16 15 C -0.12 -3.02 6.59 31.78 0.21 -2.81 16 16 C 0.10 3.82 4.61 86.73 0.40 4.22 16 17 N -0.63 -30.93 3.32 -691.54 -2.30 -33.22 16 18 C -0.32 -19.17 10.56 84.03 0.89 -18.28 16 19 H 0.04 2.43 8.06 -2.91 -0.02 2.40 16 20 C -0.08 -4.87 5.50 84.86 0.47 -4.41 16 21 N -0.96 -63.26 13.70 21.65 0.30 -62.97 16 22 Si 1.11 52.22 24.53 68.60 1.68 53.90 16 23 H -0.31 -15.24 7.11 99.48 0.71 -14.53 16 24 H -0.28 -11.76 6.84 99.48 0.68 -11.08 16 25 H -0.24 -9.77 5.43 99.48 0.54 -9.23 16 26 C 0.13 5.24 6.93 86.93 0.60 5.84 16 27 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.08 2.24 6.44 -2.39 -0.02 2.23 16 30 H 0.25 -1.28 8.06 -2.91 -0.02 -1.30 16 31 H 0.21 1.07 6.07 -2.91 -0.02 1.05 16 32 H 0.41 7.16 5.43 -92.71 -0.50 6.66 16 33 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.11 2.02 8.00 -2.39 -0.02 2.01 16 35 H 0.04 1.67 6.78 -2.39 -0.02 1.65 16 36 H 0.04 1.45 3.83 -2.39 -0.01 1.44 16 37 H 0.25 16.36 8.73 -92.71 -0.81 15.55 16 38 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -85.86 327.54 1.07 -84.80 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 0.38 Total: 8.16 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 7.87 Total: 13.19 kcal Atomic # 7 Polarization: -132.97 SS G_CDS: -7.47 Total: -140.45 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.07 Total: -20.86 kcal Atomic # 14 Polarization: 52.22 SS G_CDS: 1.68 Total: 53.90 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -1.32 Total: 1.26 kcal Total: -85.86 1.07 -84.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014936804.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.792 kcal (2) G-P(sol) polarization free energy of solvation -85.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds