Wall clock time and date at job start Tue Mar 31 2020 12:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33012 * 121.94388 * 2 1 4 4 C 1.46868 * 125.22986 * 359.97438 * 3 2 1 5 5 O 1.21668 * 119.99458 * 359.71551 * 4 3 2 6 6 N 1.34774 * 120.00450 * 179.71812 * 4 3 2 7 7 C 1.46492 * 120.00245 * 179.97438 * 6 4 3 8 8 H 1.09008 * 112.84845 * 336.19587 * 7 6 4 9 9 C 1.53775 * 113.69101 * 107.46785 * 7 6 4 10 10 C 1.53779 * 87.08438 * 139.99340 * 9 7 6 11 11 H 1.09002 * 113.61731 * 89.11293 * 10 9 7 12 12 N 1.46500 * 113.68825 * 220.00754 * 10 9 7 13 13 C 1.36940 * 119.99935 * 254.05682 * 12 10 9 14 14 H 1.08002 * 119.99799 * 0.02562 * 13 12 10 15 15 C 1.38810 * 119.99860 * 180.02562 * 13 12 10 16 16 N 1.31618 * 120.00306 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99928 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47001 * 59.99933 * 17 15 13 19 19 H 1.48499 * 109.47145 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47177 * 300.00173 * 17 15 13 21 21 C 1.53777 * 113.61596 * 205.00267 * 7 6 4 22 22 S 1.75802 * 109.54470 * 179.71574 * 3 2 1 23 23 C 1.76255 * 90.68766 * 0.26502 * 22 3 2 24 24 N 1.32277 * 141.81087 * 179.97438 * 23 22 3 25 25 C 1.33952 * 109.18642 * 180.02562 * 24 23 22 26 26 C 1.34225 * 108.46253 * 0.02562 * 25 24 23 27 27 N 1.35443 * 109.40689 * 0.02562 * 23 22 3 28 28 H 1.08999 * 109.46795 * 90.02370 * 1 2 3 29 29 H 1.08996 * 109.46973 * 210.02098 * 1 2 3 30 30 H 1.08996 * 109.46814 * 330.02169 * 1 2 3 31 31 H 0.97005 * 119.99589 * 0.02562 * 6 4 3 32 32 H 1.08993 * 113.61636 * 25.43703 * 9 7 6 33 33 H 1.09008 * 113.61006 * 254.53946 * 9 7 6 34 34 H 0.96998 * 119.99853 * 74.06469 * 12 10 9 35 35 H 0.96998 * 120.00051 * 179.97438 * 16 15 13 36 36 H 1.08997 * 113.61941 * 105.38208 * 21 7 6 37 37 H 1.09009 * 113.68972 * 334.49288 * 21 7 6 38 38 H 1.07992 * 125.76755 * 180.02562 * 25 24 23 39 39 H 1.08001 * 126.44212 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2108 1.1287 0.0000 4 6 1.6410 2.4824 -0.0005 5 8 0.4339 2.6342 -0.0063 6 7 2.4553 3.5563 0.0053 7 6 1.8869 4.9065 0.0042 8 1 0.8778 4.9406 -0.4066 9 6 2.0297 5.6381 1.3492 10 6 2.3457 6.9051 0.5370 11 1 1.4620 7.4856 0.2720 12 7 3.4123 7.7251 1.1169 13 6 3.1056 8.9015 1.7472 14 1 2.0774 9.2246 1.8172 15 6 4.1163 9.6788 2.2961 16 7 5.3694 9.2853 2.2104 17 14 3.6979 11.2832 3.1565 18 1 2.7935 11.0093 4.3021 19 1 4.9452 11.9196 3.6510 20 1 3.0224 12.1964 2.2000 21 6 2.8280 5.9705 -0.5849 22 16 3.9278 0.7512 0.0082 23 6 3.5701 -0.9746 0.0031 24 7 4.1598 -2.1587 0.0036 25 6 3.2237 -3.1168 -0.0034 26 6 2.0160 -2.5310 -0.0089 27 7 2.2279 -1.1560 -0.0048 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 -0.8898 0.5141 30 1 -0.3633 0.8902 0.5135 31 1 3.4177 3.4352 0.0094 32 1 2.8669 5.2853 1.9514 33 1 1.0987 5.7015 1.9126 34 1 4.3357 7.4348 1.0542 35 1 6.0756 9.8287 2.5936 36 1 2.5417 6.3024 -1.5829 37 1 3.8840 5.7098 -0.5123 38 1 3.4093 -4.1806 -0.0043 39 1 1.0597 -3.0328 -0.0147 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022214545.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:35 Heat of formation + Delta-G solvation = 99.261650 kcal Electronic energy + Delta-G solvation = -23355.110484 eV Core-core repulsion = 19813.137116 eV Total energy + Delta-G solvation = -3541.973368 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.12461 -40.22312 -38.36896 -36.93560 -34.28273 -32.90531 -31.54840 -30.58828 -30.00668 -28.50556 -25.22094 -24.99456 -23.98105 -23.16018 -21.88670 -20.87346 -20.43501 -19.26878 -18.71160 -17.36527 -17.03091 -16.74159 -16.43338 -15.71588 -15.10701 -14.97938 -14.90326 -14.56132 -14.34930 -13.97789 -13.65300 -13.46622 -13.09501 -12.99478 -12.88758 -12.27090 -11.99956 -11.77352 -11.60242 -11.32147 -10.97432 -10.89838 -10.74126 -10.62429 -10.57019 -10.42171 -10.15775 -10.00914 -9.67715 -9.35756 -8.99913 -8.89725 -8.04005 -7.03205 -5.83318 -3.12731 0.10048 0.43483 1.12819 1.59796 1.95593 2.46302 2.80109 3.02751 3.41126 3.45913 3.46635 3.95531 4.13685 4.36523 4.55278 4.64512 4.75341 4.92717 4.94496 5.09903 5.12310 5.24831 5.27436 5.41705 5.51037 5.70166 5.79353 5.85941 6.01917 6.03994 6.17852 6.22594 6.31912 6.34262 6.53131 6.61727 6.95771 7.24780 7.31921 7.65107 7.90923 8.34928 9.46351 10.02159 10.36542 11.38865 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.027973 B = 0.002404 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.715656 B =11642.402813 C =12264.251211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.162 3.838 3 C -0.263 4.263 4 C 0.601 3.399 5 O -0.524 6.524 6 N -0.701 5.701 7 C 0.118 3.882 8 H 0.115 0.885 9 C -0.177 4.177 10 C 0.170 3.830 11 H 0.081 0.919 12 N -0.710 5.710 13 C -0.247 4.247 14 H 0.072 0.928 15 C -0.011 4.011 16 N -0.932 5.932 17 Si 0.908 3.092 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.285 1.285 21 C -0.159 4.159 22 S 0.218 5.782 23 C 0.143 3.857 24 N -0.456 5.456 25 C 0.023 3.977 26 C -0.053 4.053 27 N -0.405 5.405 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.122 0.878 31 H 0.399 0.601 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.385 0.615 35 H 0.257 0.743 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.190 0.810 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.852 -23.688 -6.847 25.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.046 3.954 3 C -0.385 4.385 4 C 0.385 3.615 5 O -0.403 6.403 6 N -0.350 5.350 7 C 0.014 3.986 8 H 0.133 0.867 9 C -0.219 4.219 10 C 0.057 3.943 11 H 0.099 0.901 12 N -0.347 5.347 13 C -0.378 4.378 14 H 0.090 0.910 15 C -0.208 4.208 16 N -0.580 5.580 17 Si 0.739 3.261 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.212 1.212 21 C -0.199 4.199 22 S 0.470 5.530 23 C -0.223 4.223 24 N -0.180 5.180 25 C -0.125 4.125 26 C -0.184 4.184 27 N -0.084 5.084 28 H 0.109 0.891 29 H 0.091 0.909 30 H 0.140 0.860 31 H 0.233 0.767 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.220 0.780 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.207 0.793 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -6.747 -22.707 -6.758 24.633 hybrid contribution -1.271 -0.306 0.526 1.409 sum -8.018 -23.013 -6.232 25.154 Atomic orbital electron populations 1.21096 0.85077 1.05928 1.04803 1.19275 0.96571 0.82384 0.97183 1.23323 0.97699 0.97558 1.19884 1.16462 0.86364 0.81870 0.76790 1.90762 1.13431 1.85287 1.50794 1.45908 1.09471 1.06075 1.73507 1.22656 0.98689 0.77606 0.99676 0.86722 1.24376 1.01902 0.99410 0.96205 1.21327 0.93023 0.89046 0.90911 0.90138 1.42343 1.04436 1.22540 1.65430 1.19254 0.93041 0.97068 1.28399 0.91011 1.24772 0.95271 0.99221 1.01507 1.69643 0.98604 1.39356 1.50396 0.86253 0.76886 0.83453 0.79494 1.21183 1.21669 1.21172 1.23881 0.99486 0.96276 1.00221 1.84846 0.99925 0.86987 1.81208 1.26495 0.83061 1.01783 1.10913 1.70654 1.31552 0.94775 1.20973 1.22502 0.87413 0.99476 1.03139 1.22895 1.02152 0.78415 1.14951 1.43722 1.07343 1.06198 1.51134 0.89081 0.90924 0.85992 0.76670 0.90035 0.91965 0.78042 0.93338 0.91177 0.89801 0.79340 0.79670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.49 36.01 0.34 -0.58 16 2 C 0.16 1.70 6.79 -82.45 -0.56 1.14 16 3 C -0.26 -2.95 6.33 -37.90 -0.24 -3.19 16 4 C 0.60 7.62 7.77 -12.77 -0.10 7.52 16 5 O -0.52 -7.62 13.53 5.22 0.07 -7.55 16 6 N -0.70 -8.57 5.35 -54.27 -0.29 -8.86 16 7 C 0.12 1.61 4.24 -67.13 -0.28 1.33 16 8 H 0.11 1.58 7.46 -51.92 -0.39 1.19 16 9 C -0.18 -2.90 7.68 -25.92 -0.20 -3.10 16 10 C 0.17 3.13 4.47 -67.12 -0.30 2.83 16 11 H 0.08 1.47 8.11 -51.93 -0.42 1.05 16 12 N -0.71 -16.96 5.41 -52.64 -0.28 -17.25 16 13 C -0.25 -6.64 9.97 -15.06 -0.15 -6.79 16 14 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 15 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 16 N -0.93 -27.49 13.06 55.49 0.72 -26.76 16 17 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 C -0.16 -2.33 7.58 -25.92 -0.20 -2.52 16 22 S 0.22 2.30 22.41 -107.50 -2.41 -0.11 16 23 C 0.14 1.74 8.92 -88.51 -0.79 0.95 16 24 N -0.46 -5.69 11.32 -13.51 -0.15 -5.84 16 25 C 0.02 0.21 11.82 -18.04 -0.21 -0.01 16 26 C -0.05 -0.43 11.95 -15.65 -0.19 -0.62 16 27 N -0.40 -4.29 3.14 -59.27 -0.19 -4.48 16 28 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.12 1.22 5.74 -51.93 -0.30 0.93 16 31 H 0.40 4.29 7.83 -40.82 -0.32 3.97 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 33 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 34 H 0.39 9.74 7.91 -40.82 -0.32 9.42 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 1.23 8.09 -51.92 -0.42 0.81 16 38 H 0.19 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.19 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 345.71 15.07 5.21 5.21 Total: -1.00 -32.46 345.71 -9.99 -42.45 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -4.67 Total: 9.74 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -2.97 Total: -3.46 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: -0.19 Total: -63.19 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: 0.07 Total: -7.55 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.41 Total: -0.11 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.46 -9.99 -42.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022214545.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.708 kcal (2) G-P(sol) polarization free energy of solvation -32.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds