Wall clock time and date at job start Tue Mar 31 2020 12:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33012 * 121.94388 * 2 1 4 4 C 1.46868 * 125.22986 * 359.97438 * 3 2 1 5 5 O 1.21668 * 119.99458 * 359.71551 * 4 3 2 6 6 N 1.34774 * 120.00450 * 179.71812 * 4 3 2 7 7 C 1.46492 * 120.00245 * 179.97438 * 6 4 3 8 8 H 1.09008 * 112.84845 * 336.19587 * 7 6 4 9 9 C 1.53775 * 113.69101 * 107.46785 * 7 6 4 10 10 C 1.53779 * 87.08438 * 139.99340 * 9 7 6 11 11 H 1.09002 * 113.61731 * 89.11293 * 10 9 7 12 12 N 1.46500 * 113.68825 * 220.00754 * 10 9 7 13 13 C 1.36940 * 119.99935 * 254.05682 * 12 10 9 14 14 H 1.08002 * 119.99799 * 0.02562 * 13 12 10 15 15 C 1.38810 * 119.99860 * 180.02562 * 13 12 10 16 16 N 1.31618 * 120.00306 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99928 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47001 * 59.99933 * 17 15 13 19 19 H 1.48499 * 109.47145 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47177 * 300.00173 * 17 15 13 21 21 C 1.53777 * 113.61596 * 205.00267 * 7 6 4 22 22 S 1.75802 * 109.54470 * 179.71574 * 3 2 1 23 23 C 1.76255 * 90.68766 * 0.26502 * 22 3 2 24 24 N 1.32277 * 141.81087 * 179.97438 * 23 22 3 25 25 C 1.33952 * 109.18642 * 180.02562 * 24 23 22 26 26 C 1.34225 * 108.46253 * 0.02562 * 25 24 23 27 27 N 1.35443 * 109.40689 * 0.02562 * 23 22 3 28 28 H 1.08999 * 109.46795 * 90.02370 * 1 2 3 29 29 H 1.08996 * 109.46973 * 210.02098 * 1 2 3 30 30 H 1.08996 * 109.46814 * 330.02169 * 1 2 3 31 31 H 0.97005 * 119.99589 * 0.02562 * 6 4 3 32 32 H 1.08993 * 113.61636 * 25.43703 * 9 7 6 33 33 H 1.09008 * 113.61006 * 254.53946 * 9 7 6 34 34 H 0.96998 * 119.99853 * 74.06469 * 12 10 9 35 35 H 0.96998 * 120.00051 * 179.97438 * 16 15 13 36 36 H 1.08997 * 113.61941 * 105.38208 * 21 7 6 37 37 H 1.09009 * 113.68972 * 334.49288 * 21 7 6 38 38 H 1.07992 * 125.76755 * 180.02562 * 25 24 23 39 39 H 1.08001 * 126.44212 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2108 1.1287 0.0000 4 6 1.6410 2.4824 -0.0005 5 8 0.4339 2.6342 -0.0063 6 7 2.4553 3.5563 0.0053 7 6 1.8869 4.9065 0.0042 8 1 0.8778 4.9406 -0.4066 9 6 2.0297 5.6381 1.3492 10 6 2.3457 6.9051 0.5370 11 1 1.4620 7.4856 0.2720 12 7 3.4123 7.7251 1.1169 13 6 3.1056 8.9015 1.7472 14 1 2.0774 9.2246 1.8172 15 6 4.1163 9.6788 2.2961 16 7 5.3694 9.2853 2.2104 17 14 3.6979 11.2832 3.1565 18 1 2.7935 11.0093 4.3021 19 1 4.9452 11.9196 3.6510 20 1 3.0224 12.1964 2.2000 21 6 2.8280 5.9705 -0.5849 22 16 3.9278 0.7512 0.0082 23 6 3.5701 -0.9746 0.0031 24 7 4.1598 -2.1587 0.0036 25 6 3.2237 -3.1168 -0.0034 26 6 2.0160 -2.5310 -0.0089 27 7 2.2279 -1.1560 -0.0048 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 -0.8898 0.5141 30 1 -0.3633 0.8902 0.5135 31 1 3.4177 3.4352 0.0094 32 1 2.8669 5.2853 1.9514 33 1 1.0987 5.7015 1.9126 34 1 4.3357 7.4348 1.0542 35 1 6.0756 9.8287 2.5936 36 1 2.5417 6.3024 -1.5829 37 1 3.8840 5.7098 -0.5123 38 1 3.4093 -4.1806 -0.0043 39 1 1.0597 -3.0328 -0.0147 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022214545.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:34 Heat of formation + Delta-G solvation = 78.384909 kcal Electronic energy + Delta-G solvation = -23356.015767 eV Core-core repulsion = 19813.137116 eV Total energy + Delta-G solvation = -3542.878652 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.87288 -41.28814 -39.59092 -37.80319 -35.82524 -34.41661 -32.40339 -31.80127 -31.27353 -29.33157 -26.59284 -26.43631 -25.17504 -24.18120 -23.02920 -21.78062 -21.36814 -20.55405 -19.53428 -19.13853 -18.12603 -17.61213 -17.52588 -16.65609 -16.32177 -16.16509 -15.96409 -15.68412 -15.57668 -14.94225 -14.88986 -14.47381 -14.35540 -14.13565 -13.66459 -13.54515 -13.30882 -13.14972 -12.79474 -12.53449 -12.37645 -12.27400 -12.18384 -12.05933 -11.74629 -11.68994 -11.51072 -11.41563 -11.10613 -10.84343 -10.22403 -9.98088 -8.97716 -8.80462 -7.93892 -5.21923 -0.70761 -0.34766 0.34267 0.81634 1.18815 1.49161 1.51322 1.57335 1.72580 1.86883 2.06181 2.58162 3.18087 3.37652 3.45793 3.54200 3.67634 3.82517 3.87894 3.97313 4.19837 4.27393 4.31702 4.34450 4.51146 4.62159 4.70024 4.83088 4.89529 4.89766 5.02750 5.15202 5.17199 5.32661 5.37249 5.51029 5.63623 5.64876 6.28099 6.30227 6.52318 6.91730 7.35046 8.11277 8.33717 9.29041 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.027973 B = 0.002404 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.715656 B =11642.402813 C =12264.251211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.169 3.831 3 C -0.279 4.279 4 C 0.604 3.396 5 O -0.543 6.543 6 N -0.698 5.698 7 C 0.139 3.861 8 H 0.122 0.878 9 C -0.171 4.171 10 C 0.150 3.850 11 H 0.083 0.917 12 N -0.724 5.724 13 C -0.244 4.244 14 H 0.078 0.922 15 C -0.076 4.076 16 N -0.969 5.969 17 Si 0.971 3.029 18 H -0.280 1.280 19 H -0.297 1.297 20 H -0.277 1.277 21 C -0.143 4.143 22 S 0.221 5.779 23 C 0.112 3.888 24 N -0.487 5.487 25 C 0.010 3.990 26 C -0.041 4.041 27 N -0.409 5.409 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.406 0.594 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.375 0.625 35 H 0.251 0.749 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.221 0.779 39 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.666 -25.446 -7.432 28.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.053 3.947 3 C -0.401 4.401 4 C 0.390 3.610 5 O -0.423 6.423 6 N -0.348 5.348 7 C 0.035 3.965 8 H 0.140 0.860 9 C -0.213 4.213 10 C 0.040 3.960 11 H 0.101 0.899 12 N -0.362 5.362 13 C -0.376 4.376 14 H 0.096 0.904 15 C -0.268 4.268 16 N -0.620 5.620 17 Si 0.800 3.200 18 H -0.206 1.206 19 H -0.224 1.224 20 H -0.203 1.203 21 C -0.182 4.182 22 S 0.472 5.528 23 C -0.253 4.253 24 N -0.212 5.212 25 C -0.137 4.137 26 C -0.171 4.171 27 N -0.089 5.089 28 H 0.121 0.879 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.242 0.758 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.207 0.793 35 H 0.059 0.941 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.238 0.762 39 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -8.602 -24.510 -7.364 27.000 hybrid contribution -0.788 0.051 0.680 1.042 sum -9.389 -24.459 -6.684 27.039 Atomic orbital electron populations 1.21131 0.83475 1.06348 1.05583 1.19583 0.97482 0.82183 0.95459 1.23134 0.98117 0.97118 1.21758 1.16560 0.86046 0.82317 0.76066 1.90757 1.14181 1.85723 1.51670 1.45784 1.09947 1.05491 1.73535 1.22324 0.98819 0.78135 0.97239 0.86002 1.24187 1.01231 0.98696 0.97202 1.21673 0.92105 0.89380 0.92854 0.89903 1.42509 1.05150 1.22560 1.65963 1.19663 0.93172 0.97689 1.27065 0.90445 1.25543 0.95325 1.02612 1.03307 1.69793 0.99373 1.40577 1.52212 0.85254 0.76283 0.79903 0.78579 1.20581 1.22380 1.20298 1.23700 0.99747 0.95035 0.99748 1.84707 0.99641 0.86914 1.81499 1.26660 0.84013 1.02100 1.12540 1.70607 1.33302 0.95680 1.21606 1.23166 0.87160 1.00526 1.02875 1.23675 1.03675 0.77306 1.12400 1.43931 1.06813 1.07043 1.51092 0.87935 0.88406 0.87585 0.75799 0.91320 0.92105 0.79274 0.94052 0.89408 0.89700 0.76205 0.75620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 9.49 71.24 0.68 -0.85 16 2 C 0.17 3.25 6.79 40.71 0.28 3.53 16 3 C -0.28 -6.01 6.33 23.37 0.15 -5.86 16 4 C 0.60 14.69 7.77 86.50 0.67 15.36 16 5 O -0.54 -15.13 13.53 -4.25 -0.06 -15.19 16 6 N -0.70 -16.36 5.35 -443.85 -2.38 -18.73 16 7 C 0.14 3.64 4.24 45.52 0.19 3.83 16 8 H 0.12 3.12 7.46 -2.38 -0.02 3.10 16 9 C -0.17 -5.54 7.68 31.12 0.24 -5.30 16 10 C 0.15 5.46 4.47 45.52 0.20 5.67 16 11 H 0.08 2.96 8.11 -2.39 -0.02 2.94 16 12 N -0.72 -34.92 5.41 -320.44 -1.73 -36.65 16 13 C -0.24 -13.19 9.97 84.03 0.84 -12.35 16 14 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 15 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 16 N -0.97 -58.34 13.06 21.65 0.28 -58.06 16 17 Si 0.97 45.50 29.55 68.60 2.03 47.53 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 C -0.14 -4.01 7.58 31.12 0.24 -3.77 16 22 S 0.22 4.60 22.41 -56.49 -1.27 3.33 16 23 C 0.11 2.62 8.92 179.61 1.60 4.23 16 24 N -0.49 -11.70 11.32 -196.66 -2.23 -13.93 16 25 C 0.01 0.15 11.82 83.45 0.99 1.14 16 26 C -0.04 -0.54 11.95 82.62 0.99 0.45 16 27 N -0.41 -7.87 3.14 -341.44 -1.07 -8.94 16 28 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.11 1.95 5.74 -2.39 -0.01 1.94 16 31 H 0.41 8.43 7.83 -92.70 -0.73 7.70 16 32 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.37 19.36 7.91 -92.71 -0.73 18.62 16 35 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 36 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.08 2.40 8.09 -2.38 -0.02 2.38 16 38 H 0.22 1.63 8.06 -2.91 -0.02 1.61 16 39 H 0.23 0.87 8.06 -2.91 -0.02 0.84 16 Total: -1.00 -70.59 345.71 0.75 -69.84 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: -0.35 Total: 28.52 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 7.52 Total: 2.28 kcal Atomic # 7 Polarization: -129.19 SS G_CDS: -7.13 Total: -136.32 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.06 Total: -15.19 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Atomic # 16 Polarization: 4.60 SS G_CDS: -1.27 Total: 3.33 kcal Total: -70.59 0.75 -69.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022214545.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.220 kcal (2) G-P(sol) polarization free energy of solvation -70.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds