Wall clock time and date at job start Tue Mar 31 2020 12:24:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.33010 * 121.94537 * 2 1
4 4 C 1.46876 * 125.22474 * 359.97438 * 3 2 1
5 5 O 1.21664 * 120.00048 * 0.02562 * 4 3 2
6 6 N 1.34773 * 119.99387 * 180.02562 * 4 3 2
7 7 C 1.46505 * 119.99557 * 180.02562 * 6 4 3
8 8 C 1.53003 * 109.46991 * 179.97438 * 7 6 4
9 9 C 1.53944 * 113.74315 * 273.74105 * 8 7 6
10 10 N 1.47813 * 86.03592 * 222.08673 * 9 8 7
11 11 C 1.36937 * 134.45655 * 204.64686 * 10 9 8
12 12 H 1.08000 * 120.00088 * 179.86572 * 11 10 9
13 13 C 1.38817 * 119.99603 * 359.86418 * 11 10 9
14 14 N 1.31618 * 120.00449 * 0.02562 * 13 11 10
15 15 Si 1.86809 * 119.99703 * 179.97438 * 13 11 10
16 16 H 1.48498 * 109.46954 * 59.99993 * 15 13 11
17 17 H 1.48498 * 109.46727 * 180.02562 * 15 13 11
18 18 H 1.48497 * 109.47002 * 300.00350 * 15 13 11
19 19 C 1.47584 * 91.05410 * 24.54993 * 10 9 8
20 20 S 1.75804 * 109.54702 * 179.85582 * 3 2 1
21 21 C 1.76253 * 90.68390 * 0.34473 * 20 3 2
22 22 N 1.32273 * 141.81120 * 179.79415 * 21 20 3
23 23 C 1.33946 * 109.19149 * 179.97438 * 22 21 20
24 24 C 1.34229 * 108.46319 * 0.02562 * 23 22 21
25 25 N 1.35442 * 109.41116 * 359.79591 * 21 20 3
26 26 H 1.09001 * 109.46953 * 269.71388 * 1 2 3
27 27 H 1.09000 * 109.47318 * 29.70985 * 1 2 3
28 28 H 1.09000 * 109.47161 * 149.71616 * 1 2 3
29 29 H 0.96994 * 120.00902 * 0.02562 * 6 4 3
30 30 H 1.08996 * 109.47517 * 300.00175 * 7 6 4
31 31 H 1.09004 * 109.47001 * 60.00245 * 7 6 4
32 32 H 1.09001 * 112.94196 * 45.33793 * 8 7 6
33 33 H 1.09000 * 113.77025 * 336.34820 * 9 8 7
34 34 H 1.08999 * 113.76939 * 107.74965 * 9 8 7
35 35 H 0.96996 * 120.00031 * 180.02562 * 14 13 11
36 36 H 1.08994 * 113.77017 * 221.15678 * 19 10 9
37 37 H 1.08998 * 113.76941 * 89.74897 * 19 10 9
38 38 H 1.07995 * 125.77084 * 180.02562 * 23 22 21
39 39 H 1.07994 * 126.44401 * 180.02562 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.2108 1.1287 0.0000
4 6 1.6410 2.4824 -0.0005
5 8 0.4338 2.6342 -0.0006
6 7 2.4553 3.5562 -0.0010
7 6 1.8870 4.9065 -0.0010
8 6 3.0186 5.9362 -0.0009
9 6 3.5390 6.2853 1.4053
10 7 3.5623 7.6870 0.9368
11 6 4.2626 8.8072 1.2972
12 1 4.0917 9.7403 0.7810
13 6 5.1923 8.7432 2.3261
14 7 5.4010 7.6059 2.9548
15 14 6.1483 10.2711 2.8173
16 1 5.2014 11.3282 3.2546
17 1 7.0711 9.9402 3.9328
18 1 6.9327 10.7593 1.6548
19 6 2.5300 7.3941 -0.0765
20 16 3.9279 0.7512 0.0042
21 6 3.5700 -0.9746 -0.0049
22 7 4.1597 -2.1586 -0.0112
23 6 3.2237 -3.1167 -0.0156
24 6 2.0159 -2.5310 -0.0126
25 7 2.2278 -1.1560 -0.0058
26 1 -0.3633 -0.0051 1.0277
27 1 -0.3634 0.8926 -0.5093
28 1 -0.3633 -0.8874 -0.5182
29 1 3.4177 3.4352 -0.0014
30 1 1.2720 5.0420 -0.8907
31 1 1.2728 5.0421 0.8893
32 1 3.8078 5.7003 -0.7149
33 1 2.8162 6.0996 2.1998
34 1 4.5260 5.8769 1.6224
35 1 6.0504 7.5614 3.6740
36 1 2.7130 7.8694 -1.0402
37 1 1.5102 7.5348 0.2818
38 1 3.4093 -4.1806 -0.0207
39 1 1.0596 -3.0328 -0.0144
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001031736410.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:24:09
Heat of formation + Delta-G solvation = 122.010550 kcal
Electronic energy + Delta-G solvation = -23471.635703 eV
Core-core repulsion = 19930.648801 eV
Total energy + Delta-G solvation = -3540.986902 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 320.105 amu
Computer time = 1.45 seconds
Orbital eigenvalues (eV)
-43.06719 -40.02124 -38.16692 -37.00270 -34.66344 -32.25655 -31.54077 -30.54030
-29.50104 -28.11327 -25.95624 -24.84847 -23.95863 -22.91205 -21.89710 -20.95170
-20.33157 -19.01235 -18.66525 -17.23369 -16.71931 -16.68006 -16.25549 -15.55944
-15.40989 -14.86420 -14.79256 -14.72255 -14.10217 -13.88576 -13.66039 -13.42678
-13.34359 -13.00915 -12.85404 -12.41045 -11.72535 -11.52708 -11.46073 -11.37249
-11.03344 -10.83581 -10.76068 -10.64649 -10.57691 -10.21464 -9.88054 -9.84946
-9.49144 -9.31772 -9.00719 -8.82396 -7.97431 -6.91567 -5.79378 -3.11890
0.16051 0.50458 1.19779 1.65405 2.01231 2.51834 2.86133 3.07909
3.38452 3.42600 3.43924 4.01282 4.19004 4.42329 4.43094 4.71092
4.80361 4.98519 5.09775 5.15184 5.20925 5.28975 5.31194 5.56337
5.58626 5.73956 5.77073 5.92286 6.09109 6.13696 6.24956 6.39796
6.40687 6.55924 6.65422 7.17101 7.29010 7.30571 7.32368 7.51275
7.94891 7.95263 9.01919 9.68273 10.56227 11.37677
Molecular weight = 320.10amu
Principal moments of inertia in cm(-1)
A = 0.022912 B = 0.002624 C = 0.002415
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1221.783812 B =10668.621230 C =11593.012917
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.110 4.110
2 C 0.160 3.840
3 C -0.262 4.262
4 C 0.599 3.401
5 O -0.525 6.525
6 N -0.709 5.709
7 C 0.131 3.869
8 C -0.156 4.156
9 C 0.168 3.832
10 N -0.612 5.612
11 C -0.225 4.225
12 H 0.079 0.921
13 C -0.008 4.008
14 N -0.922 5.922
15 Si 0.912 3.088
16 H -0.285 1.285
17 H -0.290 1.290
18 H -0.284 1.284
19 C 0.130 3.870
20 S 0.223 5.777
21 C 0.143 3.857
22 N -0.457 5.457
23 C 0.023 3.977
24 C -0.054 4.054
25 N -0.404 5.404
26 H 0.091 0.909
27 H 0.122 0.878
28 H 0.071 0.929
29 H 0.401 0.599
30 H 0.069 0.931
31 H 0.074 0.926
32 H 0.091 0.909
33 H 0.028 0.972
34 H 0.073 0.927
35 H 0.255 0.745
36 H 0.046 0.954
37 H 0.037 0.963
38 H 0.189 0.811
39 H 0.186 0.814
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.763 -20.243 -7.789 23.393
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.044 3.956
3 C -0.384 4.384
4 C 0.384 3.616
5 O -0.404 6.404
6 N -0.358 5.358
7 C 0.008 3.992
8 C -0.176 4.176
9 C 0.042 3.958
10 N -0.338 5.338
11 C -0.352 4.352
12 H 0.097 0.903
13 C -0.204 4.204
14 N -0.569 5.569
15 Si 0.743 3.257
16 H -0.212 1.212
17 H -0.215 1.215
18 H -0.211 1.211
19 C 0.003 3.997
20 S 0.475 5.525
21 C -0.223 4.223
22 N -0.180 5.180
23 C -0.125 4.125
24 C -0.185 4.185
25 N -0.084 5.084
26 H 0.109 0.891
27 H 0.140 0.860
28 H 0.090 0.910
29 H 0.236 0.764
30 H 0.087 0.913
31 H 0.092 0.908
32 H 0.110 0.890
33 H 0.046 0.954
34 H 0.091 0.909
35 H 0.064 0.936
36 H 0.064 0.936
37 H 0.054 0.946
38 H 0.206 0.794
39 H 0.203 0.797
Dipole moment (debyes) X Y Z Total
from point charges -7.367 -19.253 -7.583 21.965
hybrid contribution -1.000 -0.137 0.489 1.122
sum -8.367 -19.390 -7.094 22.278
Atomic orbital electron populations
1.21095 0.85123 1.05838 1.04843 1.19254 0.96537 0.82383 0.97397
1.23303 0.97796 0.97502 1.19765 1.16431 0.86263 0.81861 0.77090
1.90762 1.13432 1.85351 1.50882 1.45896 1.09917 1.06307 1.73705
1.21596 0.96701 0.78619 1.02333 1.23865 0.97109 0.94158 1.02485
1.22372 0.99320 0.84332 0.89737 1.45958 1.41788 1.07338 1.38763
1.18974 1.14390 0.87755 1.14116 0.90279 1.24786 0.99890 0.97360
0.98374 1.69790 1.37374 1.24018 1.25669 0.86198 0.79579 0.82060
0.77905 1.21186 1.21531 1.21061 1.22474 0.92983 0.90547 0.93659
1.84950 0.99743 0.86797 1.80981 1.26531 0.83045 1.01855 1.10832
1.70648 1.31545 0.94786 1.21040 1.22495 0.87431 0.99460 1.03159
1.22880 1.02115 0.78440 1.15099 1.43721 1.07354 1.06183 1.51110
0.89064 0.86015 0.90996 0.76405 0.91282 0.90754 0.89040 0.95407
0.90870 0.93550 0.93561 0.94586 0.79388 0.79716
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 34.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.96 9.50 36.01 0.34 -0.61 16
2 C 0.16 1.75 6.79 -82.45 -0.56 1.19 16
3 C -0.26 -3.07 6.33 -37.90 -0.24 -3.31 16
4 C 0.60 7.87 7.77 -12.77 -0.10 7.77 16
5 O -0.53 -7.81 13.93 5.22 0.07 -7.74 16
6 N -0.71 -9.13 5.55 -61.55 -0.34 -9.47 16
7 C 0.13 1.85 5.51 -4.04 -0.02 1.82 16
8 C -0.16 -2.63 3.93 -89.69 -0.35 -2.98 16
9 C 0.17 3.72 7.08 -2.84 -0.02 3.70 16
10 N -0.61 -15.28 3.70 -177.70 -0.66 -15.94 16
11 C -0.22 -6.23 10.70 -15.06 -0.16 -6.39 16
12 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16
13 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16
14 N -0.92 -26.90 11.39 55.49 0.63 -26.27 16
15 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16
16 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16
17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
19 C 0.13 2.50 8.51 -2.96 -0.03 2.47 16
20 S 0.22 2.51 22.41 -107.50 -2.41 0.10 16
21 C 0.14 1.81 8.92 -88.51 -0.79 1.02 16
22 N -0.46 -5.92 11.32 -13.51 -0.15 -6.08 16
23 C 0.02 0.22 11.82 -18.04 -0.21 0.00 16
24 C -0.05 -0.46 11.95 -15.65 -0.19 -0.65 16
25 N -0.40 -4.47 3.14 -59.27 -0.19 -4.65 16
26 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16
27 H 0.12 1.23 5.71 -51.93 -0.30 0.93 16
28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
29 H 0.40 4.73 7.57 -40.82 -0.31 4.42 16
30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
31 H 0.07 1.13 7.87 -51.93 -0.41 0.72 16
32 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16
33 H 0.03 0.64 7.92 -51.93 -0.41 0.23 16
34 H 0.07 1.79 7.16 -51.93 -0.37 1.42 16
35 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16
36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16
37 H 0.04 0.67 8.10 -51.93 -0.42 0.24 16
38 H 0.19 1.05 8.06 -52.49 -0.42 0.63 16
39 H 0.19 0.87 8.06 -52.49 -0.42 0.44 16
LS Contribution 343.94 15.07 5.18 5.18
Total: -1.00 -33.52 343.94 -10.03 -43.56
By element:
Atomic # 1 Polarization: 5.39 SS G_CDS: -4.72 Total: 0.67 kcal
Atomic # 6 Polarization: 6.15 SS G_CDS: -2.42 Total: 3.73 kcal
Atomic # 7 Polarization: -61.70 SS G_CDS: -0.71 Total: -62.41 kcal
Atomic # 8 Polarization: -7.81 SS G_CDS: 0.07 Total: -7.74 kcal
Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal
Atomic # 16 Polarization: 2.51 SS G_CDS: -2.41 Total: 0.10 kcal
Total LS contribution 5.18 Total: 5.18 kcal
Total: -33.52 -10.03 -43.56 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001031736410.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 165.566 kcal
(2) G-P(sol) polarization free energy of solvation -33.524 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.042 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.555 kcal
(6) G-S(sol) free energy of system = (1) + (5) 122.011 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.45 seconds