Wall clock time and date at job start Tue Mar 31 2020 12:24:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.33010 * 121.94537 * 2 1
4 4 C 1.46876 * 125.22474 * 359.97438 * 3 2 1
5 5 O 1.21664 * 120.00048 * 0.02562 * 4 3 2
6 6 N 1.34773 * 119.99387 * 180.02562 * 4 3 2
7 7 C 1.46505 * 119.99557 * 180.02562 * 6 4 3
8 8 C 1.53003 * 109.46991 * 179.97438 * 7 6 4
9 9 C 1.53944 * 113.74315 * 273.74105 * 8 7 6
10 10 N 1.47813 * 86.03592 * 222.08673 * 9 8 7
11 11 C 1.36937 * 134.45655 * 204.64686 * 10 9 8
12 12 H 1.08000 * 120.00088 * 179.86572 * 11 10 9
13 13 C 1.38817 * 119.99603 * 359.86418 * 11 10 9
14 14 N 1.31618 * 120.00449 * 0.02562 * 13 11 10
15 15 Si 1.86809 * 119.99703 * 179.97438 * 13 11 10
16 16 H 1.48498 * 109.46954 * 59.99993 * 15 13 11
17 17 H 1.48498 * 109.46727 * 180.02562 * 15 13 11
18 18 H 1.48497 * 109.47002 * 300.00350 * 15 13 11
19 19 C 1.47584 * 91.05410 * 24.54993 * 10 9 8
20 20 S 1.75804 * 109.54702 * 179.85582 * 3 2 1
21 21 C 1.76253 * 90.68390 * 0.34473 * 20 3 2
22 22 N 1.32273 * 141.81120 * 179.79415 * 21 20 3
23 23 C 1.33946 * 109.19149 * 179.97438 * 22 21 20
24 24 C 1.34229 * 108.46319 * 0.02562 * 23 22 21
25 25 N 1.35442 * 109.41116 * 359.79591 * 21 20 3
26 26 H 1.09001 * 109.46953 * 269.71388 * 1 2 3
27 27 H 1.09000 * 109.47318 * 29.70985 * 1 2 3
28 28 H 1.09000 * 109.47161 * 149.71616 * 1 2 3
29 29 H 0.96994 * 120.00902 * 0.02562 * 6 4 3
30 30 H 1.08996 * 109.47517 * 300.00175 * 7 6 4
31 31 H 1.09004 * 109.47001 * 60.00245 * 7 6 4
32 32 H 1.09001 * 112.94196 * 45.33793 * 8 7 6
33 33 H 1.09000 * 113.77025 * 336.34820 * 9 8 7
34 34 H 1.08999 * 113.76939 * 107.74965 * 9 8 7
35 35 H 0.96996 * 120.00031 * 180.02562 * 14 13 11
36 36 H 1.08994 * 113.77017 * 221.15678 * 19 10 9
37 37 H 1.08998 * 113.76941 * 89.74897 * 19 10 9
38 38 H 1.07995 * 125.77084 * 180.02562 * 23 22 21
39 39 H 1.07994 * 126.44401 * 180.02562 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.2108 1.1287 0.0000
4 6 1.6410 2.4824 -0.0005
5 8 0.4338 2.6342 -0.0006
6 7 2.4553 3.5562 -0.0010
7 6 1.8870 4.9065 -0.0010
8 6 3.0186 5.9362 -0.0009
9 6 3.5390 6.2853 1.4053
10 7 3.5623 7.6870 0.9368
11 6 4.2626 8.8072 1.2972
12 1 4.0917 9.7403 0.7810
13 6 5.1923 8.7432 2.3261
14 7 5.4010 7.6059 2.9548
15 14 6.1483 10.2711 2.8173
16 1 5.2014 11.3282 3.2546
17 1 7.0711 9.9402 3.9328
18 1 6.9327 10.7593 1.6548
19 6 2.5300 7.3941 -0.0765
20 16 3.9279 0.7512 0.0042
21 6 3.5700 -0.9746 -0.0049
22 7 4.1597 -2.1586 -0.0112
23 6 3.2237 -3.1167 -0.0156
24 6 2.0159 -2.5310 -0.0126
25 7 2.2278 -1.1560 -0.0058
26 1 -0.3633 -0.0051 1.0277
27 1 -0.3634 0.8926 -0.5093
28 1 -0.3633 -0.8874 -0.5182
29 1 3.4177 3.4352 -0.0014
30 1 1.2720 5.0420 -0.8907
31 1 1.2728 5.0421 0.8893
32 1 3.8078 5.7003 -0.7149
33 1 2.8162 6.0996 2.1998
34 1 4.5260 5.8769 1.6224
35 1 6.0504 7.5614 3.6740
36 1 2.7130 7.8694 -1.0402
37 1 1.5102 7.5348 0.2818
38 1 3.4093 -4.1806 -0.0207
39 1 1.0596 -3.0328 -0.0144
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001031736410.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:24:09
Heat of formation + Delta-G solvation = 100.492112 kcal
Electronic energy + Delta-G solvation = -23472.568813 eV
Core-core repulsion = 19930.648801 eV
Total energy + Delta-G solvation = -3541.920012 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 320.105 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-43.85471 -41.08759 -39.71293 -37.89061 -35.87880 -34.19595 -32.41158 -31.27984
-30.85654 -29.28394 -27.46993 -26.52495 -24.92351 -24.05178 -23.24091 -21.84178
-21.34269 -20.43258 -19.50972 -18.74953 -18.15485 -17.52905 -17.28853 -16.96205
-16.44222 -16.30695 -15.87301 -15.66432 -15.52871 -15.01983 -14.81102 -14.47293
-14.37748 -14.13848 -13.93602 -13.55390 -13.28337 -13.07834 -12.84285 -12.57024
-12.50247 -12.34385 -12.24247 -11.83082 -11.67319 -11.59638 -11.41897 -11.28636
-11.09628 -10.84374 -10.26826 -9.97537 -8.90349 -8.78909 -7.89538 -5.22444
-0.68427 -0.32500 0.37012 0.83580 1.20783 1.46170 1.49150 1.55311
1.74757 1.89696 2.07819 2.48498 3.19538 3.31584 3.40123 3.48098
3.57691 3.74677 3.87873 4.07225 4.21740 4.35930 4.36149 4.53012
4.58913 4.65590 4.78994 4.81875 4.87946 4.88733 5.06366 5.12172
5.26698 5.31939 5.38551 5.55635 5.66064 5.66793 5.95711 6.28006
6.54275 6.92194 6.93458 7.62438 8.57721 9.27021
Molecular weight = 320.10amu
Principal moments of inertia in cm(-1)
A = 0.022912 B = 0.002624 C = 0.002415
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1221.783812 B =10668.621230 C =11593.012917
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 C 0.169 3.831
3 C -0.278 4.278
4 C 0.604 3.396
5 O -0.544 6.544
6 N -0.709 5.709
7 C 0.143 3.857
8 C -0.119 4.119
9 C 0.163 3.837
10 N -0.647 5.647
11 C -0.235 4.235
12 H 0.084 0.916
13 C -0.068 4.068
14 N -0.953 5.953
15 Si 0.977 3.023
16 H -0.279 1.279
17 H -0.295 1.295
18 H -0.275 1.275
19 C 0.129 3.871
20 S 0.217 5.783
21 C 0.112 3.888
22 N -0.488 5.488
23 C 0.010 3.990
24 C -0.040 4.040
25 N -0.409 5.409
26 H 0.099 0.901
27 H 0.109 0.891
28 H 0.099 0.901
29 H 0.406 0.594
30 H 0.089 0.911
31 H 0.065 0.935
32 H 0.102 0.898
33 H 0.015 0.985
34 H 0.042 0.958
35 H 0.248 0.752
36 H 0.063 0.937
37 H 0.051 0.949
38 H 0.222 0.778
39 H 0.228 0.772
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.248 -21.442 -8.936 25.390
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.053 3.947
3 C -0.400 4.400
4 C 0.389 3.611
5 O -0.424 6.424
6 N -0.359 5.359
7 C 0.020 3.980
8 C -0.139 4.139
9 C 0.038 3.962
10 N -0.373 5.373
11 C -0.364 4.364
12 H 0.101 0.899
13 C -0.261 4.261
14 N -0.602 5.602
15 Si 0.806 3.194
16 H -0.205 1.205
17 H -0.222 1.222
18 H -0.201 1.201
19 C 0.004 3.996
20 S 0.469 5.531
21 C -0.253 4.253
22 N -0.213 5.213
23 C -0.138 4.138
24 C -0.170 4.170
25 N -0.088 5.088
26 H 0.117 0.883
27 H 0.127 0.873
28 H 0.118 0.882
29 H 0.242 0.758
30 H 0.107 0.893
31 H 0.083 0.917
32 H 0.120 0.880
33 H 0.033 0.967
34 H 0.060 0.940
35 H 0.057 0.943
36 H 0.081 0.919
37 H 0.069 0.931
38 H 0.238 0.762
39 H 0.244 0.756
Dipole moment (debyes) X Y Z Total
from point charges -8.871 -20.465 -8.764 23.965
hybrid contribution -0.607 0.109 0.816 1.023
sum -9.478 -20.356 -7.948 23.820
Atomic orbital electron populations
1.21140 0.83383 1.06534 1.05470 1.19582 0.97498 0.82130 0.95531
1.23121 0.97996 0.97161 1.21721 1.16493 0.85940 0.82232 0.76434
1.90754 1.14084 1.85752 1.51788 1.45813 1.10265 1.05935 1.73847
1.21358 0.95353 0.78462 1.02869 1.23446 0.97714 0.94052 0.98664
1.22296 0.97660 0.83743 0.92484 1.46396 1.43242 1.07479 1.40212
1.19389 1.14326 0.88925 1.13732 0.89869 1.25620 1.01393 1.00185
0.98945 1.69983 1.38137 1.25874 1.26181 0.85170 0.78118 0.78770
0.77377 1.20503 1.22153 1.20101 1.22689 0.92334 0.91681 0.92925
1.84837 0.99814 0.86998 1.81431 1.26642 0.84035 1.02047 1.12542
1.70599 1.33344 0.95692 1.21635 1.23168 0.87170 1.00514 1.02918
1.23675 1.03666 0.77283 1.12411 1.43937 1.06785 1.07061 1.51064
0.88282 0.87308 0.88223 0.75842 0.89254 0.91681 0.87951 0.96743
0.93952 0.94329 0.91906 0.93096 0.76196 0.75555
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.59 9.50 71.24 0.68 -0.91 16
2 C 0.17 3.42 6.79 40.71 0.28 3.69 16
3 C -0.28 -6.36 6.33 23.37 0.15 -6.21 16
4 C 0.60 15.39 7.77 86.50 0.67 16.06 16
5 O -0.54 -15.57 13.93 -4.23 -0.06 -15.63 16
6 N -0.71 -17.74 5.55 -466.89 -2.59 -20.33 16
7 C 0.14 3.84 5.51 86.38 0.48 4.32 16
8 C -0.12 -3.90 3.93 -10.13 -0.04 -3.94 16
9 C 0.16 7.41 7.08 86.44 0.61 8.02 16
10 N -0.65 -32.41 3.70 -716.11 -2.65 -35.06 16
11 C -0.24 -13.11 10.70 84.03 0.90 -12.21 16
12 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16
13 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16
14 N -0.95 -57.26 11.39 21.65 0.25 -57.02 16
15 Si 0.98 45.65 29.55 68.60 2.03 47.68 16
16 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16
17 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16
18 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16
19 C 0.13 4.77 8.51 86.49 0.74 5.50 16
20 S 0.22 4.94 22.41 -56.49 -1.27 3.68 16
21 C 0.11 2.78 8.92 179.61 1.60 4.39 16
22 N -0.49 -12.29 11.32 -196.67 -2.23 -14.52 16
23 C 0.01 0.16 11.82 83.46 0.99 1.14 16
24 C -0.04 -0.56 11.95 82.62 0.99 0.42 16
25 N -0.41 -8.28 3.14 -341.45 -1.07 -9.36 16
26 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16
27 H 0.11 2.00 5.71 -2.39 -0.01 1.99 16
28 H 0.10 0.91 8.14 -2.39 -0.02 0.90 16
29 H 0.41 9.47 7.57 -92.71 -0.70 8.77 16
30 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16
31 H 0.06 1.91 7.87 -2.39 -0.02 1.90 16
32 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16
33 H 0.01 0.70 7.92 -2.39 -0.02 0.68 16
34 H 0.04 2.16 7.16 -2.39 -0.02 2.15 16
35 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16
36 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16
37 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16
38 H 0.22 1.81 8.06 -2.91 -0.02 1.79 16
39 H 0.23 1.01 8.06 -2.91 -0.02 0.99 16
Total: -1.00 -73.94 343.94 1.30 -72.64
By element:
Atomic # 1 Polarization: 10.68 SS G_CDS: 0.39 Total: 11.07 kcal
Atomic # 6 Polarization: 8.35 SS G_CDS: 8.50 Total: 16.85 kcal
Atomic # 7 Polarization: -127.99 SS G_CDS: -8.30 Total: -136.28 kcal
Atomic # 8 Polarization: -15.57 SS G_CDS: -0.06 Total: -15.63 kcal
Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal
Atomic # 16 Polarization: 4.94 SS G_CDS: -1.27 Total: 3.68 kcal
Total: -73.94 1.30 -72.64 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001031736410.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 173.131 kcal
(2) G-P(sol) polarization free energy of solvation -73.937 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.194 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.298 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.639 kcal
(6) G-S(sol) free energy of system = (1) + (5) 100.492 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds