Wall clock time and date at job start Tue Mar 31 2020 12:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38361 * 119.85761 * 2 1 4 4 C 1.37938 * 120.15767 * 179.97438 * 3 2 1 5 5 C 1.39605 * 119.87955 * 0.02562 * 4 3 2 6 6 C 1.47854 * 120.13490 * 179.97438 * 5 4 3 7 7 O 1.21550 * 119.99631 * 185.88697 * 6 5 4 8 8 N 1.34768 * 120.00164 * 5.88923 * 6 5 4 9 9 C 1.47876 * 126.94906 * 354.13457 * 8 6 5 10 10 C 1.56015 * 105.10556 * 182.00274 * 9 8 6 11 11 H 1.09001 * 116.24670 * 159.68370 * 10 9 8 12 12 C 1.57080 * 99.60952 * 32.80457 * 10 9 8 13 13 C 1.49296 * 126.94707 * 174.13333 * 8 6 5 14 14 H 1.08998 * 116.14611 * 15.83612 * 13 8 6 15 15 C 1.56022 * 104.09045 * 246.69965 * 13 8 6 16 16 N 1.47867 * 105.10272 * 288.75926 * 15 13 8 17 17 C 1.36941 * 126.94167 * 182.02354 * 16 15 13 18 18 H 1.07996 * 119.99264 * 179.97438 * 17 16 15 19 19 C 1.38807 * 120.00046 * 359.97438 * 17 16 15 20 20 N 1.31624 * 120.00073 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00121 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47096 * 89.99708 * 21 19 17 23 23 H 1.48497 * 109.47650 * 210.00176 * 21 19 17 24 24 H 1.48500 * 109.46905 * 330.00474 * 21 19 17 25 25 C 1.39534 * 119.72582 * 0.24671 * 5 4 3 26 26 C 1.38104 * 119.83501 * 359.45832 * 25 5 4 27 27 Cl 1.73605 * 119.94243 * 180.31703 * 26 25 5 28 28 H 1.09002 * 109.47393 * 90.00216 * 1 2 3 29 29 H 1.09001 * 109.47213 * 210.00373 * 1 2 3 30 30 H 1.09001 * 109.47352 * 330.00104 * 1 2 3 31 31 H 1.07994 * 119.92312 * 359.97438 * 3 2 1 32 32 H 1.08004 * 120.06248 * 179.97438 * 4 3 2 33 33 H 1.09004 * 110.31171 * 300.91373 * 9 8 6 34 34 H 1.09001 * 110.31449 * 63.09334 * 9 8 6 35 35 H 1.08994 * 112.36952 * 191.71690 * 12 10 9 36 36 H 1.08996 * 112.36995 * 64.27094 * 12 10 9 37 37 H 1.08992 * 110.31810 * 47.67381 * 15 13 8 38 38 H 1.09003 * 110.31211 * 169.85623 * 15 13 8 39 39 H 0.97006 * 119.99792 * 179.97438 * 20 19 17 40 40 H 1.08000 * 120.08521 * 179.72149 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5752 1.2072 0.0005 5 6 4.2770 0.0004 0.0005 6 6 5.7556 0.0015 0.0005 7 8 6.3641 -1.0452 -0.1074 8 7 6.4285 1.1630 0.1203 9 6 5.8539 2.5254 0.1394 10 6 7.0811 3.4829 0.2451 11 1 6.9157 4.5145 -0.0654 12 6 8.1351 2.6489 -0.5680 13 6 7.9050 1.3343 0.2604 14 1 8.5156 0.4693 0.0017 15 6 8.0864 1.9004 1.7030 16 7 7.5761 3.2868 1.6398 17 6 7.5611 4.2054 2.6553 18 1 7.1594 5.1931 2.4839 19 6 8.0620 3.8669 3.9048 20 7 8.5511 2.6629 4.1136 21 14 8.0421 5.1201 5.2899 22 1 6.7682 5.0041 6.0442 23 1 9.1839 4.8653 6.2045 24 1 8.1583 6.4873 4.7220 25 6 3.5774 -1.2069 -0.0052 26 6 2.1964 -1.2007 0.0004 27 17 1.3231 -2.7011 0.0016 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6523 2.1331 -0.0004 32 1 4.1113 2.1447 0.0001 33 1 5.3027 2.7166 -0.7814 34 1 5.2019 2.6490 1.0042 35 1 9.1471 3.0377 -0.4563 36 1 7.8545 2.5338 -1.6150 37 1 7.5049 1.3151 2.4151 38 1 9.1405 1.8974 1.9808 39 1 8.9016 2.4265 4.9868 40 1 4.1144 -2.1439 -0.0098 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032601819.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:00 Heat of formation + Delta-G solvation = 60.376123 kcal Electronic energy + Delta-G solvation = -24729.464819 eV Core-core repulsion = 21151.468790 eV Total energy + Delta-G solvation = -3577.996029 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.103 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.59891 -39.24537 -37.68151 -36.51985 -33.90231 -33.01648 -31.70555 -30.78319 -29.19080 -28.69864 -27.34077 -25.42358 -24.00764 -22.95545 -22.03281 -20.76735 -19.89845 -19.00474 -17.67101 -16.60231 -16.32894 -15.64642 -15.45867 -15.02707 -14.91056 -14.36090 -14.23019 -13.91843 -13.83745 -13.38837 -13.26156 -12.66324 -12.53322 -12.45539 -12.03350 -11.82061 -11.74426 -11.50830 -11.42265 -11.27549 -11.08372 -10.98391 -10.90906 -10.67911 -10.60814 -10.21010 -10.10973 -9.70809 -9.61296 -9.00913 -8.75978 -8.75224 -8.09657 -6.98707 -5.81998 -3.17175 0.73700 1.11148 1.97239 2.92296 3.26955 3.34119 3.38765 3.41713 3.81280 4.36906 4.48916 4.59598 4.73651 4.92565 5.00411 5.08508 5.17518 5.26940 5.36143 5.39918 5.44027 5.50547 5.54007 5.69130 5.70105 5.75469 5.81815 5.96144 6.05136 6.18848 6.21178 6.23974 6.33148 6.39473 6.51446 6.57112 6.66348 7.36311 7.42342 7.66455 7.95890 8.04349 8.46846 9.04395 9.65587 10.33675 11.29993 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.016405 B = 0.003578 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.392860 B = 7823.747828 C = 8401.742213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.059 4.059 3 C -0.118 4.118 4 C -0.108 4.108 5 C -0.116 4.116 6 C 0.571 3.429 7 O -0.550 6.550 8 N -0.598 5.598 9 C 0.071 3.929 10 C 0.139 3.861 11 H 0.109 0.891 12 C -0.150 4.150 13 C 0.099 3.901 14 H 0.116 0.884 15 C 0.173 3.827 16 N -0.597 5.597 17 C -0.235 4.235 18 H 0.081 0.919 19 C -0.004 4.004 20 N -0.918 5.918 21 Si 0.913 3.087 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C -0.051 4.051 26 C -0.050 4.050 27 Cl -0.069 7.069 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.136 0.864 32 H 0.168 0.832 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.048 0.952 38 H 0.058 0.942 39 H 0.255 0.745 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.154 -2.623 -11.096 17.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.060 4.060 3 C -0.136 4.136 4 C -0.126 4.126 5 C -0.119 4.119 6 C 0.361 3.639 7 O -0.430 6.430 8 N -0.330 5.330 9 C -0.054 4.054 10 C 0.030 3.970 11 H 0.127 0.873 12 C -0.190 4.190 13 C -0.003 4.003 14 H 0.134 0.866 15 C 0.048 3.952 16 N -0.321 5.321 17 C -0.363 4.363 18 H 0.099 0.901 19 C -0.201 4.201 20 N -0.564 5.564 21 Si 0.743 3.257 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C -0.070 4.070 26 C -0.076 4.076 27 Cl -0.040 7.040 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.154 0.846 32 H 0.185 0.815 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.858 -3.362 -10.850 17.157 hybrid contribution -0.179 0.353 0.954 1.033 sum -13.037 -3.008 -9.896 16.641 Atomic orbital electron populations 1.20917 0.90217 1.03658 1.02964 1.19971 0.96813 0.91509 0.97741 1.21011 0.93999 0.97145 1.01488 1.22908 0.94882 1.00019 0.94781 1.19904 0.93591 0.93493 1.04928 1.17723 0.86266 0.82807 0.77141 1.90738 1.69690 1.30825 1.51749 1.49048 1.08884 1.05207 1.69880 1.23722 0.98860 0.82968 0.99823 1.23246 0.90534 0.95988 0.87199 0.87318 1.24151 1.01015 0.96375 0.97438 1.24418 0.79443 0.97080 0.99401 0.86584 1.21958 0.99431 0.84664 0.89175 1.45250 1.70750 1.10659 1.05401 1.19038 1.35515 0.93075 0.88631 0.90076 1.24824 1.00676 0.96891 0.97699 1.69915 1.45482 1.18464 1.22580 0.86119 0.77253 0.80270 0.82060 1.21584 1.21650 1.20597 1.21104 0.91510 0.98974 0.95443 1.20620 0.92018 0.86843 1.08127 1.98349 1.76332 1.32279 1.97032 0.90496 0.90733 0.90844 0.84583 0.81499 0.91866 0.90011 0.89570 0.91514 0.93391 0.92408 0.93509 0.83801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 9.61 36.01 0.35 -0.67 16 2 C -0.06 -0.67 5.89 -104.50 -0.62 -1.29 16 3 C -0.12 -1.32 9.68 -39.65 -0.38 -1.71 16 4 C -0.11 -1.44 8.78 -39.18 -0.34 -1.79 16 5 C -0.12 -1.84 5.87 -104.97 -0.62 -2.46 16 6 C 0.57 10.75 7.86 -12.33 -0.10 10.66 16 7 O -0.55 -11.85 16.70 5.32 0.09 -11.76 16 8 N -0.60 -10.83 2.95 -158.74 -0.47 -11.30 16 9 C 0.07 1.13 4.23 -1.67 -0.01 1.12 16 10 C 0.14 2.41 5.53 -62.56 -0.35 2.07 16 11 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 12 C -0.15 -2.42 6.81 -22.30 -0.15 -2.57 16 13 C 0.10 1.86 5.26 -62.55 -0.33 1.53 16 14 H 0.12 2.14 8.03 -51.93 -0.42 1.72 16 15 C 0.17 4.03 4.76 -1.68 -0.01 4.02 16 16 N -0.60 -13.74 3.02 -156.35 -0.47 -14.22 16 17 C -0.23 -6.03 10.37 -15.06 -0.16 -6.18 16 18 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 19 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 20 N -0.92 -26.25 10.56 55.49 0.59 -25.66 16 21 Si 0.91 21.23 29.55 -169.99 -5.02 16.21 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 25 C -0.05 -0.75 9.37 -39.15 -0.37 -1.12 16 26 C -0.05 -0.64 6.31 -39.55 -0.25 -0.89 16 27 Cl -0.07 -0.79 27.27 -51.86 -1.41 -2.20 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.63 6.88 -51.93 -0.36 0.27 16 30 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 31 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 32 H 0.17 2.10 2.81 -53.66 -0.15 1.95 16 33 H 0.06 0.79 6.88 -51.93 -0.36 0.43 16 34 H 0.08 1.40 6.87 -51.93 -0.36 1.05 16 35 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.05 1.30 7.68 -51.93 -0.40 0.90 16 38 H 0.06 1.49 7.46 -51.93 -0.39 1.10 16 39 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.14 2.19 7.66 -52.49 -0.40 1.78 16 LS Contribution 336.30 15.07 5.07 5.07 Total: -1.00 -30.86 336.30 -9.96 -40.83 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -4.91 Total: 2.50 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -3.42 Total: 0.54 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: -0.35 Total: -51.17 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.41 Total: -2.20 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.86 -9.96 -40.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032601819.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.202 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds