Wall clock time and date at job start Tue Mar 31 2020 12:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38361 * 119.85761 * 2 1 4 4 C 1.37938 * 120.15767 * 179.97438 * 3 2 1 5 5 C 1.39605 * 119.87955 * 0.02562 * 4 3 2 6 6 C 1.47854 * 120.13490 * 179.97438 * 5 4 3 7 7 O 1.21550 * 119.99631 * 185.88697 * 6 5 4 8 8 N 1.34768 * 120.00164 * 5.88923 * 6 5 4 9 9 C 1.47876 * 126.94906 * 354.13457 * 8 6 5 10 10 C 1.56015 * 105.10556 * 182.00274 * 9 8 6 11 11 H 1.09001 * 116.24670 * 159.68370 * 10 9 8 12 12 C 1.57080 * 99.60952 * 32.80457 * 10 9 8 13 13 C 1.49296 * 126.94707 * 174.13333 * 8 6 5 14 14 H 1.08998 * 116.14611 * 15.83612 * 13 8 6 15 15 C 1.56022 * 104.09045 * 246.69965 * 13 8 6 16 16 N 1.47867 * 105.10272 * 288.75926 * 15 13 8 17 17 C 1.36941 * 126.94167 * 182.02354 * 16 15 13 18 18 H 1.07996 * 119.99264 * 179.97438 * 17 16 15 19 19 C 1.38807 * 120.00046 * 359.97438 * 17 16 15 20 20 N 1.31624 * 120.00073 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00121 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47096 * 89.99708 * 21 19 17 23 23 H 1.48497 * 109.47650 * 210.00176 * 21 19 17 24 24 H 1.48500 * 109.46905 * 330.00474 * 21 19 17 25 25 C 1.39534 * 119.72582 * 0.24671 * 5 4 3 26 26 C 1.38104 * 119.83501 * 359.45832 * 25 5 4 27 27 Cl 1.73605 * 119.94243 * 180.31703 * 26 25 5 28 28 H 1.09002 * 109.47393 * 90.00216 * 1 2 3 29 29 H 1.09001 * 109.47213 * 210.00373 * 1 2 3 30 30 H 1.09001 * 109.47352 * 330.00104 * 1 2 3 31 31 H 1.07994 * 119.92312 * 359.97438 * 3 2 1 32 32 H 1.08004 * 120.06248 * 179.97438 * 4 3 2 33 33 H 1.09004 * 110.31171 * 300.91373 * 9 8 6 34 34 H 1.09001 * 110.31449 * 63.09334 * 9 8 6 35 35 H 1.08994 * 112.36952 * 191.71690 * 12 10 9 36 36 H 1.08996 * 112.36995 * 64.27094 * 12 10 9 37 37 H 1.08992 * 110.31810 * 47.67381 * 15 13 8 38 38 H 1.09003 * 110.31211 * 169.85623 * 15 13 8 39 39 H 0.97006 * 119.99792 * 179.97438 * 20 19 17 40 40 H 1.08000 * 120.08521 * 179.72149 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5752 1.2072 0.0005 5 6 4.2770 0.0004 0.0005 6 6 5.7556 0.0015 0.0005 7 8 6.3641 -1.0452 -0.1074 8 7 6.4285 1.1630 0.1203 9 6 5.8539 2.5254 0.1394 10 6 7.0811 3.4829 0.2451 11 1 6.9157 4.5145 -0.0654 12 6 8.1351 2.6489 -0.5680 13 6 7.9050 1.3343 0.2604 14 1 8.5156 0.4693 0.0017 15 6 8.0864 1.9004 1.7030 16 7 7.5761 3.2868 1.6398 17 6 7.5611 4.2054 2.6553 18 1 7.1594 5.1931 2.4839 19 6 8.0620 3.8669 3.9048 20 7 8.5511 2.6629 4.1136 21 14 8.0421 5.1201 5.2899 22 1 6.7682 5.0041 6.0442 23 1 9.1839 4.8653 6.2045 24 1 8.1583 6.4873 4.7220 25 6 3.5774 -1.2069 -0.0052 26 6 2.1964 -1.2007 0.0004 27 17 1.3231 -2.7011 0.0016 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6523 2.1331 -0.0004 32 1 4.1113 2.1447 0.0001 33 1 5.3027 2.7166 -0.7814 34 1 5.2019 2.6490 1.0042 35 1 9.1471 3.0377 -0.4563 36 1 7.8545 2.5338 -1.6150 37 1 7.5049 1.3151 2.4151 38 1 9.1405 1.8974 1.9808 39 1 8.9016 2.4265 4.9868 40 1 4.1144 -2.1439 -0.0098 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032601819.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:59 Heat of formation + Delta-G solvation = 42.918569 kcal Electronic energy + Delta-G solvation = -24730.221835 eV Core-core repulsion = 21151.468790 eV Total energy + Delta-G solvation = -3578.753045 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.103 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.96988 -40.42855 -39.10106 -37.48905 -35.58800 -34.20464 -33.18126 -31.96509 -30.67207 -30.32874 -28.32464 -27.08520 -25.59930 -24.02082 -23.26687 -22.07099 -21.38134 -20.52977 -19.14534 -18.21108 -17.70340 -16.98490 -16.66202 -16.37882 -16.21477 -15.91738 -15.44633 -15.16325 -14.89041 -14.82332 -14.72808 -13.89335 -13.62334 -13.44141 -13.33631 -13.25711 -13.14967 -12.90994 -12.74997 -12.70297 -12.48391 -12.46200 -12.19223 -12.14224 -11.98122 -11.91956 -11.60497 -11.51302 -11.10721 -10.69079 -10.03037 -9.77724 -9.55265 -8.89826 -7.83427 -5.19271 -0.32937 0.10580 1.00081 1.48815 1.49703 1.58468 1.67332 1.91120 2.49742 2.65141 3.29122 3.34775 3.46514 3.67167 3.73887 3.77580 3.87803 4.00015 4.07156 4.18575 4.21258 4.39212 4.49334 4.59996 4.64663 4.73627 4.79536 4.82695 4.85500 5.01064 5.04272 5.13846 5.16955 5.21452 5.23542 5.31440 5.45882 5.51505 5.66171 5.68905 6.10133 6.54470 7.02455 7.03581 7.72212 8.42080 9.27901 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.016405 B = 0.003578 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.392860 B = 7823.747828 C = 8401.742213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.051 4.051 3 C -0.110 4.110 4 C -0.106 4.106 5 C -0.142 4.142 6 C 0.564 3.436 7 O -0.592 6.592 8 N -0.601 5.601 9 C 0.077 3.923 10 C 0.136 3.864 11 H 0.144 0.856 12 C -0.128 4.128 13 C 0.099 3.901 14 H 0.113 0.887 15 C 0.187 3.813 16 N -0.615 5.615 17 C -0.228 4.228 18 H 0.100 0.900 19 C -0.071 4.071 20 N -0.959 5.959 21 Si 0.975 3.025 22 H -0.291 1.291 23 H -0.305 1.305 24 H -0.260 1.260 25 C -0.066 4.066 26 C -0.058 4.058 27 Cl -0.059 7.059 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.176 0.824 32 H 0.177 0.823 33 H 0.114 0.886 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.104 0.896 37 H -0.005 1.005 38 H 0.019 0.981 39 H 0.242 0.758 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.187 0.032 -13.195 20.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.052 4.052 3 C -0.127 4.127 4 C -0.124 4.124 5 C -0.145 4.145 6 C 0.355 3.645 7 O -0.475 6.475 8 N -0.332 5.332 9 C -0.047 4.047 10 C 0.030 3.970 11 H 0.162 0.838 12 C -0.167 4.167 13 C -0.004 4.004 14 H 0.131 0.869 15 C 0.061 3.939 16 N -0.340 5.340 17 C -0.356 4.356 18 H 0.118 0.882 19 C -0.264 4.264 20 N -0.608 5.608 21 Si 0.805 3.195 22 H -0.218 1.218 23 H -0.232 1.232 24 H -0.184 1.184 25 C -0.086 4.086 26 C -0.085 4.085 27 Cl -0.030 7.030 28 H 0.112 0.888 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.193 0.807 32 H 0.194 0.806 33 H 0.131 0.869 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.122 0.878 37 H 0.013 0.987 38 H 0.038 0.962 39 H 0.052 0.948 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.930 -0.657 -13.004 20.574 hybrid contribution 0.664 -0.511 1.561 1.772 sum -15.266 -1.168 -11.443 19.114 Atomic orbital electron populations 1.21027 0.87679 1.04683 1.04331 1.20421 0.98603 0.90782 0.95368 1.21434 0.93103 0.98624 0.99586 1.22998 0.95961 0.99024 0.94406 1.19743 0.91705 0.95082 1.08002 1.18300 0.87709 0.82268 0.76232 1.90697 1.70859 1.32226 1.53744 1.49109 1.08411 1.06189 1.69507 1.23744 0.98108 0.81033 1.01775 1.23704 0.91085 0.98319 0.83903 0.83845 1.24063 1.00680 0.93310 0.98677 1.24248 0.80662 0.98463 0.97008 0.86944 1.21520 0.96183 0.85230 0.90989 1.45499 1.70951 1.09890 1.07630 1.19567 1.33046 0.93962 0.89047 0.88203 1.25653 1.01797 0.98477 1.00443 1.70167 1.47790 1.20662 1.22190 0.85112 0.76248 0.79092 0.79087 1.21828 1.23181 1.18429 1.21041 0.92620 0.98214 0.96704 1.20737 0.91380 0.88136 1.08212 1.98349 1.75800 1.31886 1.96985 0.88752 0.90935 0.88667 0.80701 0.80625 0.86873 0.91223 0.89837 0.87797 0.98656 0.96245 0.94838 0.85530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 9.61 71.24 0.68 -0.84 16 2 C -0.05 -0.98 5.89 -19.78 -0.12 -1.10 16 3 C -0.11 -2.01 9.68 22.23 0.22 -1.80 16 4 C -0.11 -2.56 8.78 22.53 0.20 -2.36 16 5 C -0.14 -4.48 5.87 -20.09 -0.12 -4.59 16 6 C 0.56 21.71 7.86 86.79 0.68 22.39 16 7 O -0.59 -26.90 16.70 -3.87 -0.06 -26.97 16 8 N -0.60 -21.58 2.95 -774.43 -2.28 -23.87 16 9 C 0.08 2.22 4.23 87.16 0.37 2.59 16 10 C 0.14 4.32 5.53 46.93 0.26 4.58 16 11 H 0.14 3.61 8.14 -2.39 -0.02 3.59 16 12 C -0.13 -3.82 6.81 33.46 0.23 -3.59 16 13 C 0.10 3.80 5.26 46.93 0.25 4.05 16 14 H 0.11 4.35 8.03 -2.39 -0.02 4.33 16 15 C 0.19 9.19 4.76 87.16 0.42 9.60 16 16 N -0.62 -28.26 3.02 -648.57 -1.96 -30.22 16 17 C -0.23 -11.58 10.37 84.03 0.87 -10.71 16 18 H 0.10 4.61 7.83 -2.91 -0.02 4.59 16 19 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 20 N -0.96 -57.88 10.56 21.65 0.23 -57.65 16 21 Si 0.98 44.28 29.55 68.60 2.03 46.31 16 22 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 23 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 24 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 25 C -0.07 -1.99 9.37 22.55 0.21 -1.78 16 26 C -0.06 -1.42 6.31 22.29 0.14 -1.28 16 27 Cl -0.06 -1.29 27.27 -2.72 -0.07 -1.36 16 28 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 0.98 6.88 -2.39 -0.02 0.96 16 30 H 0.09 0.84 8.08 -2.39 -0.02 0.82 16 31 H 0.18 1.87 8.06 -2.91 -0.02 1.84 16 32 H 0.18 3.78 2.81 -4.01 -0.01 3.77 16 33 H 0.11 2.24 6.88 -2.39 -0.02 2.22 16 34 H 0.07 2.24 6.87 -2.39 -0.02 2.22 16 35 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.00 -0.28 7.68 -2.39 -0.02 -0.30 16 38 H 0.02 1.08 7.46 -2.39 -0.02 1.06 16 39 H 0.24 14.52 8.31 -92.70 -0.77 13.75 16 40 H 0.13 4.13 7.66 -2.91 -0.02 4.11 16 Total: -1.00 -73.10 336.30 3.70 -69.41 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 1.07 Total: 12.63 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 4.75 Total: 11.71 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -4.01 Total: -111.73 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.06 Total: -26.97 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.07 Total: -1.36 kcal Total: -73.10 3.70 -69.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032601819.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.324 kcal (2) G-P(sol) polarization free energy of solvation -73.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds