Wall clock time and date at job start Tue Mar 31 2020 12:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.34219 * 125.76809 * 2 1 4 4 N 1.39118 * 107.11241 * 180.02562 * 3 2 1 5 5 C 1.36235 * 139.30055 * 179.97438 * 4 3 2 6 6 C 1.33003 * 116.11299 * 180.26673 * 5 4 3 7 7 C 1.46877 * 125.22741 * 179.72805 * 6 5 4 8 8 O 1.21669 * 119.99638 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99965 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99751 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47030 * 179.97438 * 10 9 7 12 12 H 1.09002 * 112.96400 * 53.31932 * 11 10 9 13 13 C 1.53945 * 113.76958 * 184.99450 * 11 10 9 14 14 C 1.53943 * 86.28735 * 137.90920 * 13 11 10 15 15 N 1.47577 * 86.12064 * 336.39369 * 14 13 11 16 16 C 1.36937 * 134.49663 * 204.63857 * 15 14 13 17 17 H 1.07998 * 120.00018 * 173.48959 * 16 15 14 18 18 C 1.38811 * 119.99830 * 353.48489 * 16 15 14 19 19 N 1.31623 * 120.00218 * 5.07377 * 18 16 15 20 20 Si 1.86806 * 120.00061 * 185.06924 * 18 16 15 21 21 H 1.48494 * 109.46975 * 94.99108 * 20 18 16 22 22 H 1.48499 * 109.47061 * 214.99371 * 20 18 16 23 23 H 1.48501 * 109.46876 * 334.99405 * 20 18 16 24 24 S 1.75800 * 109.54797 * 359.60196 * 6 5 4 25 25 C 1.35449 * 106.45903 * 359.97438 * 4 3 2 26 26 N 1.32279 * 108.77526 * 0.02562 * 25 4 3 27 27 H 1.08998 * 109.46896 * 270.02782 * 1 2 3 28 28 H 1.08992 * 109.46988 * 30.02716 * 1 2 3 29 29 H 1.09001 * 109.47120 * 150.03173 * 1 2 3 30 30 H 1.07999 * 126.44341 * 0.02562 * 3 2 1 31 31 H 1.08003 * 121.93789 * 0.02562 * 5 4 3 32 32 H 0.96998 * 120.00087 * 0.02562 * 9 7 6 33 33 H 1.08998 * 109.46916 * 299.99724 * 10 9 7 34 34 H 1.08996 * 109.47246 * 60.00038 * 10 9 7 35 35 H 1.08990 * 113.74631 * 252.25855 * 13 11 10 36 36 H 1.09002 * 113.74129 * 23.46051 * 13 11 10 37 37 H 1.09000 * 113.77071 * 90.69744 * 14 13 11 38 38 H 1.09006 * 113.77421 * 221.98127 * 14 13 11 39 39 H 0.96996 * 120.00126 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2916 1.0890 0.0000 4 7 3.6097 0.6440 -0.0006 5 6 4.8724 1.1553 -0.0013 6 6 5.8633 0.2681 -0.0072 7 6 7.2948 0.5967 -0.0148 8 8 7.6519 1.7599 -0.0155 9 7 8.2127 -0.3900 -0.0209 10 6 9.6406 -0.0622 -0.0279 11 6 10.4604 -1.3540 -0.0332 12 1 10.1780 -2.0335 -0.8373 13 6 11.9785 -1.1259 0.0819 14 6 11.9821 -2.3157 1.0587 15 7 10.5587 -2.0016 1.2892 16 6 9.6814 -2.2224 2.3172 17 1 8.6914 -1.7922 2.2841 18 6 10.0647 -2.9992 3.4019 19 7 11.3015 -3.4406 3.4911 20 14 8.8251 -3.4182 4.7352 21 1 8.2211 -4.7445 4.4504 22 1 9.5096 -3.4584 6.0524 23 1 7.7593 -2.3845 4.7625 24 16 5.1964 -1.3585 -0.0010 25 6 3.5578 -0.7095 -0.0003 26 7 2.2900 -1.0869 -0.0002 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8903 -0.5133 30 1 1.9617 2.1174 0.0004 31 1 5.0580 2.2193 -0.0012 32 1 7.9280 -1.3173 -0.0207 33 1 9.8750 0.5211 -0.9183 34 1 9.8843 0.5187 0.8616 35 1 12.5223 -1.3159 -0.8433 36 1 12.2457 -0.1756 0.5442 37 1 12.1469 -3.2793 0.5767 38 1 12.6146 -2.1642 1.9335 39 1 11.5693 -3.9832 4.2492 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038350740.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:15 Heat of formation + Delta-G solvation = 118.494157 kcal Electronic energy + Delta-G solvation = -23725.206195 eV Core-core repulsion = 20184.066811 eV Total energy + Delta-G solvation = -3541.139384 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.93706 -39.73645 -38.05871 -36.75582 -34.34332 -32.25803 -31.70464 -31.12315 -28.50116 -27.90567 -26.92958 -24.70169 -23.41789 -22.76302 -21.50167 -21.08581 -20.01922 -19.09569 -18.73237 -17.20348 -16.49924 -16.44146 -16.24471 -15.84811 -15.43868 -14.75216 -14.72594 -14.39013 -13.86418 -13.73649 -13.58587 -13.43843 -13.15436 -13.07003 -12.61587 -12.05773 -11.62838 -11.53639 -11.49008 -11.18751 -11.05879 -10.78294 -10.72777 -10.60090 -10.42424 -10.29911 -9.95699 -9.79456 -9.50551 -9.05952 -8.86654 -8.77658 -7.92174 -6.93924 -5.82752 -3.14933 0.28218 0.59717 1.30874 1.77019 2.13810 2.53879 3.03702 3.25453 3.36729 3.42904 3.43893 4.09578 4.31170 4.39184 4.65745 4.76382 4.94903 5.03569 5.10096 5.32307 5.36246 5.40366 5.53376 5.56770 5.60763 5.76444 5.82813 5.94902 6.20162 6.22254 6.32170 6.49060 6.50123 6.57009 6.70543 7.20234 7.33411 7.42897 7.51540 7.54799 7.92746 8.12835 8.98911 9.66029 10.53938 11.34312 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.015073 B = 0.003632 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.209402 B = 7706.420796 C = 9027.846994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.048 3.952 3 C -0.057 4.057 4 N -0.404 5.404 5 C 0.122 3.878 6 C -0.245 4.245 7 C 0.596 3.404 8 O -0.532 6.532 9 N -0.700 5.700 10 C 0.123 3.877 11 C 0.123 3.877 12 H 0.051 0.949 13 C -0.155 4.155 14 C 0.162 3.838 15 N -0.602 5.602 16 C -0.225 4.225 17 H 0.079 0.921 18 C -0.002 4.002 19 N -0.916 5.916 20 Si 0.902 3.098 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.280 1.280 24 S 0.232 5.768 25 C 0.143 3.857 26 N -0.455 5.455 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.186 0.814 31 H 0.195 0.805 32 H 0.403 0.597 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.029 0.971 38 H 0.070 0.930 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.018 8.483 -10.188 19.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.082 4.082 3 C -0.188 4.188 4 N -0.083 5.083 5 C -0.013 4.013 6 C -0.368 4.368 7 C 0.379 3.621 8 O -0.411 6.411 9 N -0.349 5.349 10 C -0.001 4.001 11 C 0.015 3.985 12 H 0.069 0.931 13 C -0.194 4.194 14 C 0.037 3.963 15 N -0.329 5.329 16 C -0.352 4.352 17 H 0.096 0.904 18 C -0.200 4.200 19 N -0.562 5.562 20 Si 0.732 3.268 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 S 0.483 5.517 25 C -0.223 4.223 26 N -0.180 5.180 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.203 0.797 31 H 0.212 0.788 32 H 0.238 0.762 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.047 0.953 38 H 0.088 0.912 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.525 7.112 -9.854 18.183 hybrid contribution -1.163 1.294 0.859 1.941 sum -14.688 8.406 -8.995 19.165 Atomic orbital electron populations 1.20132 0.86237 1.03334 1.02976 1.20869 0.96913 0.87562 1.02818 1.22603 0.78590 1.01180 1.16455 1.43649 1.05806 1.07926 1.50878 1.20513 0.80052 1.01579 0.99165 1.23654 0.98668 0.97447 1.16985 1.16487 0.82374 0.85799 0.77403 1.90829 1.80444 1.18746 1.51108 1.45835 1.07345 1.08927 1.72806 1.21931 0.77307 0.98874 1.01997 1.22530 0.93811 0.91689 0.90448 0.93136 1.23785 0.94586 1.01331 0.99698 1.22138 0.86632 0.92478 0.95090 1.46076 1.08522 1.66979 1.11285 1.18926 0.94685 1.25883 0.95755 0.90369 1.24786 0.96634 0.99765 0.98766 1.69831 1.15658 1.39526 1.31180 0.86252 0.80528 0.78545 0.81457 1.21426 1.21649 1.20498 1.85143 0.85757 1.00582 1.80206 1.26581 1.00795 0.84162 1.10757 1.70528 0.96411 1.29474 1.21577 0.90601 0.90641 0.90495 0.79700 0.78806 0.76231 0.91473 0.90361 0.92670 0.90432 0.95305 0.91180 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.41 36.01 0.38 -0.13 16 2 C 0.05 0.56 7.05 -83.08 -0.59 -0.03 16 3 C -0.06 -0.60 11.92 -15.66 -0.19 -0.79 16 4 N -0.40 -5.12 3.14 -63.52 -0.20 -5.32 16 5 C 0.12 1.49 10.93 -17.41 -0.19 1.30 16 6 C -0.24 -3.37 6.34 -37.90 -0.24 -3.61 16 7 C 0.60 9.48 7.79 -12.77 -0.10 9.38 16 8 O -0.53 -9.62 16.75 5.22 0.09 -9.54 16 9 N -0.70 -11.28 5.51 -61.56 -0.34 -11.62 16 10 C 0.12 2.06 5.54 -4.04 -0.02 2.04 16 11 C 0.12 2.24 4.33 -66.86 -0.29 1.95 16 12 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 13 C -0.16 -2.67 7.86 -25.81 -0.20 -2.87 16 14 C 0.16 3.58 7.42 -2.98 -0.02 3.56 16 15 N -0.60 -14.18 3.57 -170.74 -0.61 -14.79 16 16 C -0.23 -5.90 10.50 -15.06 -0.16 -6.06 16 17 H 0.08 1.98 7.79 -52.49 -0.41 1.57 16 18 C 0.00 -0.06 5.50 -17.43 -0.10 -0.16 16 19 N -0.92 -26.41 11.51 55.49 0.64 -25.78 16 20 Si 0.90 21.80 29.56 -169.99 -5.02 16.78 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 S 0.23 3.13 22.41 -107.50 -2.41 0.72 16 25 C 0.14 2.06 8.92 -88.50 -0.79 1.27 16 26 N -0.46 -6.74 11.32 -9.73 -0.11 -6.85 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.19 1.21 8.06 -52.49 -0.42 0.78 16 31 H 0.20 1.94 7.97 -52.48 -0.42 1.52 16 32 H 0.40 6.32 7.57 -40.82 -0.31 6.01 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 1.73 7.36 -51.93 -0.38 1.35 16 39 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 349.90 15.07 5.27 5.27 Total: -1.00 -32.85 349.90 -10.08 -42.93 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.88 Total: 2.35 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -2.51 Total: 5.85 kcal Atomic # 7 Polarization: -63.74 SS G_CDS: -0.62 Total: -64.36 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -2.41 Total: 0.72 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.85 -10.08 -42.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038350740.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.421 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds