Wall clock time and date at job start Tue Mar 31 2020 12:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.34219 * 125.76809 * 2 1 4 4 N 1.39118 * 107.11241 * 180.02562 * 3 2 1 5 5 C 1.36235 * 139.30055 * 179.97438 * 4 3 2 6 6 C 1.33003 * 116.11299 * 180.26673 * 5 4 3 7 7 C 1.46877 * 125.22741 * 179.72805 * 6 5 4 8 8 O 1.21669 * 119.99638 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99965 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99751 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47030 * 179.97438 * 10 9 7 12 12 H 1.09002 * 112.96400 * 53.31932 * 11 10 9 13 13 C 1.53945 * 113.76958 * 184.99450 * 11 10 9 14 14 C 1.53943 * 86.28735 * 137.90920 * 13 11 10 15 15 N 1.47577 * 86.12064 * 336.39369 * 14 13 11 16 16 C 1.36937 * 134.49663 * 204.63857 * 15 14 13 17 17 H 1.07998 * 120.00018 * 173.48959 * 16 15 14 18 18 C 1.38811 * 119.99830 * 353.48489 * 16 15 14 19 19 N 1.31623 * 120.00218 * 5.07377 * 18 16 15 20 20 Si 1.86806 * 120.00061 * 185.06924 * 18 16 15 21 21 H 1.48494 * 109.46975 * 94.99108 * 20 18 16 22 22 H 1.48499 * 109.47061 * 214.99371 * 20 18 16 23 23 H 1.48501 * 109.46876 * 334.99405 * 20 18 16 24 24 S 1.75800 * 109.54797 * 359.60196 * 6 5 4 25 25 C 1.35449 * 106.45903 * 359.97438 * 4 3 2 26 26 N 1.32279 * 108.77526 * 0.02562 * 25 4 3 27 27 H 1.08998 * 109.46896 * 270.02782 * 1 2 3 28 28 H 1.08992 * 109.46988 * 30.02716 * 1 2 3 29 29 H 1.09001 * 109.47120 * 150.03173 * 1 2 3 30 30 H 1.07999 * 126.44341 * 0.02562 * 3 2 1 31 31 H 1.08003 * 121.93789 * 0.02562 * 5 4 3 32 32 H 0.96998 * 120.00087 * 0.02562 * 9 7 6 33 33 H 1.08998 * 109.46916 * 299.99724 * 10 9 7 34 34 H 1.08996 * 109.47246 * 60.00038 * 10 9 7 35 35 H 1.08990 * 113.74631 * 252.25855 * 13 11 10 36 36 H 1.09002 * 113.74129 * 23.46051 * 13 11 10 37 37 H 1.09000 * 113.77071 * 90.69744 * 14 13 11 38 38 H 1.09006 * 113.77421 * 221.98127 * 14 13 11 39 39 H 0.96996 * 120.00126 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2916 1.0890 0.0000 4 7 3.6097 0.6440 -0.0006 5 6 4.8724 1.1553 -0.0013 6 6 5.8633 0.2681 -0.0072 7 6 7.2948 0.5967 -0.0148 8 8 7.6519 1.7599 -0.0155 9 7 8.2127 -0.3900 -0.0209 10 6 9.6406 -0.0622 -0.0279 11 6 10.4604 -1.3540 -0.0332 12 1 10.1780 -2.0335 -0.8373 13 6 11.9785 -1.1259 0.0819 14 6 11.9821 -2.3157 1.0587 15 7 10.5587 -2.0016 1.2892 16 6 9.6814 -2.2224 2.3172 17 1 8.6914 -1.7922 2.2841 18 6 10.0647 -2.9992 3.4019 19 7 11.3015 -3.4406 3.4911 20 14 8.8251 -3.4182 4.7352 21 1 8.2211 -4.7445 4.4504 22 1 9.5096 -3.4584 6.0524 23 1 7.7593 -2.3845 4.7625 24 16 5.1964 -1.3585 -0.0010 25 6 3.5578 -0.7095 -0.0003 26 7 2.2900 -1.0869 -0.0002 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8903 -0.5133 30 1 1.9617 2.1174 0.0004 31 1 5.0580 2.2193 -0.0012 32 1 7.9280 -1.3173 -0.0207 33 1 9.8750 0.5211 -0.9183 34 1 9.8843 0.5187 0.8616 35 1 12.5223 -1.3159 -0.8433 36 1 12.2457 -0.1756 0.5442 37 1 12.1469 -3.2793 0.5767 38 1 12.6146 -2.1642 1.9335 39 1 11.5693 -3.9832 4.2492 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038350740.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:14 Heat of formation + Delta-G solvation = 97.611355 kcal Electronic energy + Delta-G solvation = -23726.111742 eV Core-core repulsion = 20184.066811 eV Total energy + Delta-G solvation = -3542.044931 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.87125 -41.01794 -39.62659 -37.74832 -35.70167 -34.22139 -32.58009 -32.06857 -29.98028 -29.56593 -27.87366 -25.75804 -25.28083 -24.08774 -22.73312 -21.98023 -21.29194 -20.63626 -19.73568 -18.71479 -17.90401 -17.47227 -17.33362 -17.10243 -16.92898 -16.28092 -15.88482 -15.62254 -15.55650 -14.96580 -14.72669 -14.59827 -14.20642 -13.98858 -13.63414 -13.32959 -13.17355 -12.94481 -12.72057 -12.60038 -12.53524 -12.52330 -12.28469 -11.89681 -11.72974 -11.62042 -11.47447 -11.37224 -11.13597 -10.83194 -10.24277 -9.87741 -8.89131 -8.86591 -7.88759 -5.18882 -0.72006 -0.39868 0.31989 0.80027 1.18476 1.43282 1.44781 1.51574 1.63432 1.85714 2.07358 2.46771 3.14292 3.30835 3.39933 3.48154 3.57632 3.95682 4.00090 4.06916 4.15964 4.29783 4.36216 4.62705 4.72426 4.78725 4.83861 4.86246 4.88229 4.99188 5.09028 5.09607 5.25203 5.36287 5.42329 5.62373 5.66346 5.75558 5.98316 6.25261 6.52029 6.87360 6.96180 7.65619 8.60694 9.28772 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.015073 B = 0.003632 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.209402 B = 7706.420796 C = 9027.846994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.029 3.971 3 C -0.044 4.044 4 N -0.408 5.408 5 C 0.144 3.856 6 C -0.263 4.263 7 C 0.602 3.398 8 O -0.556 6.556 9 N -0.703 5.703 10 C 0.131 3.869 11 C 0.128 3.872 12 H 0.071 0.929 13 C -0.128 4.128 14 C 0.152 3.848 15 N -0.630 5.630 16 C -0.214 4.214 17 H 0.083 0.917 18 C -0.065 4.065 19 N -0.950 5.950 20 Si 0.956 3.044 21 H -0.287 1.287 22 H -0.298 1.298 23 H -0.272 1.272 24 S 0.220 5.780 25 C 0.115 3.885 26 N -0.486 5.486 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.071 0.929 30 H 0.229 0.771 31 H 0.220 0.780 32 H 0.404 0.596 33 H 0.094 0.906 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.022 0.978 38 H 0.035 0.965 39 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.941 10.498 -11.628 22.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.100 4.100 3 C -0.174 4.174 4 N -0.087 5.087 5 C 0.008 3.992 6 C -0.385 4.385 7 C 0.386 3.614 8 O -0.437 6.437 9 N -0.352 5.352 10 C 0.007 3.993 11 C 0.022 3.978 12 H 0.088 0.912 13 C -0.166 4.166 14 C 0.026 3.974 15 N -0.357 5.357 16 C -0.342 4.342 17 H 0.101 0.899 18 C -0.258 4.258 19 N -0.600 5.600 20 Si 0.786 3.214 21 H -0.215 1.215 22 H -0.225 1.225 23 H -0.197 1.197 24 S 0.471 5.529 25 C -0.250 4.250 26 N -0.212 5.212 27 H 0.103 0.897 28 H 0.124 0.876 29 H 0.090 0.910 30 H 0.245 0.755 31 H 0.236 0.764 32 H 0.239 0.761 33 H 0.112 0.888 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.039 0.961 38 H 0.054 0.946 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -15.486 9.139 -11.331 21.254 hybrid contribution -0.686 0.738 1.226 1.586 sum -16.171 9.877 -10.105 21.475 Atomic orbital electron populations 1.20273 0.83599 1.04571 1.03910 1.21621 0.98644 0.87045 1.02688 1.23404 0.77291 1.02875 1.13806 1.43877 1.06600 1.07423 1.50794 1.20834 0.79573 1.02334 0.96418 1.23355 0.97833 0.97812 1.19515 1.16601 0.83040 0.85245 0.76475 1.90811 1.81064 1.19498 1.52333 1.45828 1.07228 1.09177 1.72972 1.21748 0.77630 0.97817 1.02083 1.22718 0.94952 0.91915 0.88181 0.91182 1.23566 0.94177 0.99060 0.99817 1.22119 0.85715 0.94345 0.95187 1.46429 1.08949 1.67261 1.13034 1.19252 0.94941 1.23857 0.96173 0.89915 1.25458 0.98021 1.01126 1.01170 1.69993 1.17160 1.41150 1.31670 0.85379 0.78784 0.78283 0.78957 1.21461 1.22520 1.19650 1.85052 0.86148 1.00883 1.80842 1.26635 1.00827 0.85184 1.12360 1.70492 0.97083 1.31501 1.22109 0.89719 0.87632 0.91050 0.75454 0.76364 0.76062 0.88792 0.92823 0.88667 0.89916 0.96055 0.94649 0.94529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.41 71.24 0.74 -0.06 16 2 C 0.03 0.60 7.05 41.32 0.29 0.90 16 3 C -0.04 -0.78 11.92 82.62 0.99 0.21 16 4 N -0.41 -9.43 3.14 -354.87 -1.12 -10.55 16 5 C 0.14 3.19 10.93 82.84 0.91 4.09 16 6 C -0.26 -6.90 6.34 23.37 0.15 -6.75 16 7 C 0.60 18.37 7.79 86.50 0.67 19.04 16 8 O -0.56 -19.27 16.75 -4.25 -0.07 -19.34 16 9 N -0.70 -21.80 5.51 -466.90 -2.57 -24.37 16 10 C 0.13 4.17 5.54 86.38 0.48 4.65 16 11 C 0.13 4.43 4.33 45.09 0.20 4.63 16 12 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 13 C -0.13 -4.11 7.86 31.25 0.25 -3.87 16 14 C 0.15 6.75 7.42 86.48 0.64 7.39 16 15 N -0.63 -29.58 3.57 -694.11 -2.48 -32.06 16 16 C -0.21 -11.27 10.50 84.03 0.88 -10.39 16 17 H 0.08 4.18 7.79 -2.91 -0.02 4.16 16 18 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 19 N -0.95 -56.62 11.51 21.65 0.25 -56.37 16 20 Si 0.96 45.75 29.56 68.60 2.03 47.78 16 21 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 22 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 23 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 24 S 0.22 5.86 22.41 -56.49 -1.27 4.60 16 25 C 0.12 3.23 8.92 179.61 1.60 4.83 16 26 N -0.49 -13.99 11.32 -184.68 -2.09 -16.08 16 27 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.23 1.81 8.06 -2.91 -0.02 1.79 16 31 H 0.22 3.66 7.97 -2.91 -0.02 3.63 16 32 H 0.40 12.33 7.57 -92.71 -0.70 11.63 16 33 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.08 2.61 8.10 -2.39 -0.02 2.59 16 37 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.04 1.80 7.36 -2.38 -0.02 1.78 16 39 H 0.25 14.40 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -73.02 349.90 1.33 -71.69 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.39 Total: 13.18 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: 8.26 Total: 21.52 kcal Atomic # 7 Polarization: -131.43 SS G_CDS: -8.01 Total: -139.44 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.07 Total: -19.34 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Atomic # 16 Polarization: 5.86 SS G_CDS: -1.27 Total: 4.60 kcal Total: -73.02 1.33 -71.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038350740.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.304 kcal (2) G-P(sol) polarization free energy of solvation -73.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds