Wall clock time and date at job start Tue Mar 31 2020 13:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46774 * 2 1 4 4 N 1.46504 * 109.46787 * 119.99372 * 2 1 3 5 5 C 1.38800 * 119.99945 * 85.00745 * 4 2 1 6 6 C 1.39275 * 119.57535 * 0.02562 * 5 4 2 7 7 C 1.38017 * 119.21855 * 179.74677 * 6 5 4 8 8 C 1.39999 * 118.40403 * 0.47680 * 7 6 5 9 9 C 1.48322 * 120.45752 * 179.80241 * 8 7 6 10 10 N 1.30818 * 126.41794 * 359.69242 * 9 8 7 11 11 O 1.21285 * 110.08785 * 180.02562 * 10 9 8 12 12 C 1.33665 * 110.03635 * 359.97438 * 11 10 9 13 13 C 1.50703 * 126.42790 * 179.97438 * 12 11 10 14 14 S 1.81002 * 109.47349 * 270.02547 * 13 12 11 15 15 C 1.76199 * 100.00182 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99976 * 0.02562 * 15 14 13 17 17 C 1.38803 * 119.99949 * 179.97438 * 15 14 13 18 18 N 1.31630 * 119.99849 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00065 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46755 * 90.00066 * 19 17 15 21 21 H 1.48495 * 109.46931 * 210.00080 * 19 17 15 22 22 H 1.48500 * 109.46738 * 330.00322 * 19 17 15 23 23 N 1.30963 * 107.13922 * 0.26450 * 12 11 10 24 24 C 1.39190 * 119.09255 * 359.52604 * 8 7 6 25 25 N 1.31777 * 120.68709 * 0.22853 * 24 8 7 26 26 H 1.09000 * 109.47230 * 300.00434 * 1 2 3 27 27 H 1.08996 * 109.47029 * 60.00628 * 1 2 3 28 28 H 1.09002 * 109.46627 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47501 * 239.99640 * 2 1 3 30 30 H 1.09001 * 109.46715 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46992 * 299.99667 * 3 2 1 32 32 H 1.08991 * 109.47400 * 59.99579 * 3 2 1 33 33 H 0.96998 * 119.99801 * 264.99865 * 4 2 1 34 34 H 1.08001 * 120.38701 * 0.02562 * 6 5 4 35 35 H 1.08002 * 120.79675 * 180.28092 * 7 6 5 36 36 H 1.09005 * 109.46867 * 150.02849 * 13 12 11 37 37 H 1.09000 * 109.47235 * 30.02889 * 13 12 11 38 38 H 0.97005 * 119.99878 * 179.97438 * 18 17 15 39 39 H 1.08004 * 119.65707 * 180.25825 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1510 -2.0722 1.1945 6 6 1.8179 -2.7933 0.0505 7 6 1.9576 -4.1663 0.0551 8 6 2.4226 -4.7845 1.2220 9 6 2.5857 -6.2576 1.2787 10 7 2.3282 -7.1051 0.3159 11 8 2.5668 -8.2365 0.6820 12 6 3.0109 -8.2259 1.9427 13 6 3.4147 -9.4263 2.7594 14 16 1.9736 -10.0615 3.6517 15 6 2.7117 -11.4191 4.4981 16 1 3.7633 -11.6288 4.3689 17 6 1.9420 -12.2186 5.3318 18 7 0.6605 -11.9627 5.4897 19 14 2.7243 -13.6584 6.2286 20 1 3.2330 -13.2027 7.5473 21 1 1.7113 -14.7252 6.4306 22 1 3.8506 -14.1916 5.4209 23 7 3.0233 -6.9770 2.3370 24 6 2.7353 -3.9972 2.3264 25 7 2.5931 -2.6879 2.2810 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 2.2490 -0.1821 1.9895 34 1 1.4588 -2.2835 -0.8313 35 1 1.7111 -4.7502 -0.8194 36 1 4.1857 -9.1371 3.4736 37 1 3.8035 -10.2012 2.0988 38 1 0.1224 -12.5216 6.0720 39 1 3.0988 -4.4642 3.2299 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119456016.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:02 Heat of formation + Delta-G solvation = 99.525736 kcal Electronic energy + Delta-G solvation = -22617.520321 eV Core-core repulsion = 19075.558404 eV Total energy + Delta-G solvation = -3541.961917 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.14178 -40.47803 -37.53722 -35.58561 -33.76778 -32.56190 -32.28881 -32.20086 -29.25256 -28.41448 -27.71323 -25.62571 -24.62138 -23.80675 -22.96128 -21.37078 -20.92091 -18.25280 -17.96929 -17.78551 -17.11862 -16.87381 -15.71725 -15.48240 -14.93889 -14.90238 -14.68640 -14.51071 -14.12838 -14.06398 -13.41467 -13.39597 -13.12528 -12.94206 -12.77691 -12.69790 -12.26190 -12.02883 -11.92494 -11.72700 -11.49784 -11.15621 -11.11247 -11.07105 -10.75737 -10.55221 -10.10440 -9.94759 -9.66128 -9.42105 -9.17349 -8.53777 -7.85235 -6.72434 -6.34644 -4.09132 0.75958 1.16088 1.53802 2.61523 2.74644 3.07760 3.18324 3.22532 3.26331 3.42982 3.73022 3.82320 4.07903 4.22454 4.26592 4.50008 4.52774 4.65878 4.72095 4.88657 4.98578 5.02968 5.07576 5.18882 5.23650 5.29008 5.33336 5.42207 5.57192 5.60029 5.70980 5.74759 5.79576 5.89293 6.05472 6.17144 6.27939 6.37057 6.72170 7.23691 7.49655 7.94197 8.24044 8.46799 9.11316 10.73285 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.032889 B = 0.002076 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.145658 B =13481.525272 C =13773.837543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.144 3.856 3 C -0.160 4.160 4 N -0.717 5.717 5 C 0.414 3.586 6 C -0.244 4.244 7 C 0.001 3.999 8 C -0.129 4.129 9 C 0.222 3.778 10 N -0.391 5.391 11 O 0.078 5.922 12 C 0.232 3.768 13 C -0.044 4.044 14 S -0.081 6.081 15 C -0.526 4.526 16 H 0.081 0.919 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.925 3.075 20 H -0.275 1.275 21 H -0.282 1.282 22 H -0.270 1.270 23 N -0.478 5.478 24 C 0.202 3.798 25 N -0.543 5.543 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.405 0.595 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.270 0.730 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.783 22.742 -12.071 25.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.039 3.961 3 C -0.218 4.218 4 N -0.350 5.350 5 C 0.177 3.823 6 C -0.269 4.269 7 C -0.026 4.026 8 C -0.136 4.136 9 C -0.049 4.049 10 N -0.101 5.101 11 O 0.020 5.980 12 C 0.012 3.988 13 C -0.192 4.192 14 S 0.144 5.856 15 C -0.674 4.674 16 H 0.099 0.901 17 C -0.136 4.136 18 N -0.502 5.502 19 Si 0.750 3.250 20 H -0.201 1.201 21 H -0.207 1.207 22 H -0.195 1.195 23 N -0.212 5.212 24 C 0.041 3.959 25 N -0.260 5.260 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.241 0.759 34 H 0.154 0.846 35 H 0.158 0.842 36 H 0.130 0.870 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.451 24.194 -11.953 27.025 hybrid contribution 1.437 -1.853 0.232 2.357 sum 2.888 22.341 -11.721 25.393 Atomic orbital electron populations 1.22330 0.95335 1.02888 1.02503 1.21010 0.94056 0.93128 0.87937 1.22060 1.01921 0.94743 1.03094 1.44622 1.71200 1.02433 1.16702 1.18515 0.88863 0.85515 0.89364 1.21291 1.11950 0.94124 0.99492 1.21323 0.90824 0.93819 0.96641 1.18022 1.11333 0.86924 0.97273 1.23545 0.99326 0.95898 0.86111 1.74805 1.22025 0.90123 1.23174 1.85262 1.60049 1.24138 1.28527 1.28125 0.92415 0.95066 0.83197 1.21998 1.05867 0.91664 0.99696 1.85227 1.07335 1.37267 1.55732 1.22711 0.98234 1.14299 1.32160 0.90132 1.25031 0.94806 0.97878 0.95840 1.70002 1.05554 1.38541 1.36089 0.86069 0.78872 0.80386 0.79639 1.20120 1.20699 1.19465 1.72003 1.21805 1.01225 1.26187 1.22621 0.89502 0.86888 0.96909 1.67299 1.20964 1.11191 1.26560 0.92078 0.91450 0.91965 0.89875 0.91791 0.90739 0.91864 0.75923 0.84568 0.84233 0.87006 0.87858 0.91967 0.81200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 9.40 37.16 0.35 -0.59 16 2 C 0.14 0.80 2.87 -67.93 -0.19 0.60 16 3 C -0.16 -0.61 9.38 37.16 0.35 -0.27 16 4 N -0.72 -5.80 5.24 -53.93 -0.28 -6.08 16 5 C 0.41 4.63 7.62 -155.10 -1.18 3.44 16 6 C -0.24 -2.54 8.81 -39.28 -0.35 -2.89 16 7 C 0.00 0.01 9.81 -39.00 -0.38 -0.37 16 8 C -0.13 -1.91 5.89 -104.73 -0.62 -2.52 16 9 C 0.22 3.87 7.81 -156.09 -1.22 2.65 16 10 N -0.39 -7.01 11.93 30.98 0.37 -6.64 16 11 O 0.08 1.44 11.29 18.05 0.20 1.64 16 12 C 0.23 4.36 7.75 -12.99 -0.10 4.25 16 13 C -0.04 -0.83 6.30 36.01 0.23 -0.61 16 14 S -0.08 -2.03 21.42 -107.50 -2.30 -4.34 16 15 C -0.53 -14.09 9.50 30.94 0.29 -13.80 16 16 H 0.08 2.03 7.80 -52.49 -0.41 1.62 16 17 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 18 N -0.87 -24.97 13.22 55.49 0.73 -24.24 16 19 Si 0.92 20.57 29.55 -169.99 -5.02 15.55 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 23 N -0.48 -8.96 11.27 -9.88 -0.11 -9.07 16 24 C 0.20 2.86 10.86 -17.22 -0.19 2.67 16 25 N -0.54 -7.23 10.38 -12.19 -0.13 -7.36 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.43 7.64 -51.93 -0.40 0.03 16 29 H 0.08 0.45 6.43 -51.93 -0.33 0.11 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.40 3.03 8.72 -40.82 -0.36 2.67 16 34 H 0.14 1.05 6.04 -52.49 -0.32 0.74 16 35 H 0.14 1.59 7.94 -52.49 -0.42 1.17 16 36 H 0.11 2.02 8.14 -51.91 -0.42 1.60 16 37 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 38 H 0.27 7.26 8.31 -40.82 -0.34 6.93 16 39 H 0.17 2.37 7.88 -52.48 -0.41 1.95 16 LS Contribution 354.89 15.07 5.35 5.35 Total: -1.00 -31.15 354.89 -9.04 -40.18 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -4.74 Total: 0.50 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -3.11 Total: -5.50 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.58 Total: -53.39 kcal Atomic # 8 Polarization: 1.44 SS G_CDS: 0.20 Total: 1.64 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: -2.03 SS G_CDS: -2.30 Total: -4.34 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.15 -9.04 -40.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119456016.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.709 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds