Wall clock time and date at job start Tue Mar 31 2020 13:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46774 * 2 1 4 4 N 1.46504 * 109.46787 * 119.99372 * 2 1 3 5 5 C 1.38800 * 119.99945 * 85.00745 * 4 2 1 6 6 C 1.39275 * 119.57535 * 0.02562 * 5 4 2 7 7 C 1.38017 * 119.21855 * 179.74677 * 6 5 4 8 8 C 1.39999 * 118.40403 * 0.47680 * 7 6 5 9 9 C 1.48322 * 120.45752 * 179.80241 * 8 7 6 10 10 N 1.30818 * 126.41794 * 359.69242 * 9 8 7 11 11 O 1.21285 * 110.08785 * 180.02562 * 10 9 8 12 12 C 1.33665 * 110.03635 * 359.97438 * 11 10 9 13 13 C 1.50703 * 126.42790 * 179.97438 * 12 11 10 14 14 S 1.81002 * 109.47349 * 270.02547 * 13 12 11 15 15 C 1.76199 * 100.00182 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99976 * 0.02562 * 15 14 13 17 17 C 1.38803 * 119.99949 * 179.97438 * 15 14 13 18 18 N 1.31630 * 119.99849 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00065 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46755 * 90.00066 * 19 17 15 21 21 H 1.48495 * 109.46931 * 210.00080 * 19 17 15 22 22 H 1.48500 * 109.46738 * 330.00322 * 19 17 15 23 23 N 1.30963 * 107.13922 * 0.26450 * 12 11 10 24 24 C 1.39190 * 119.09255 * 359.52604 * 8 7 6 25 25 N 1.31777 * 120.68709 * 0.22853 * 24 8 7 26 26 H 1.09000 * 109.47230 * 300.00434 * 1 2 3 27 27 H 1.08996 * 109.47029 * 60.00628 * 1 2 3 28 28 H 1.09002 * 109.46627 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47501 * 239.99640 * 2 1 3 30 30 H 1.09001 * 109.46715 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46992 * 299.99667 * 3 2 1 32 32 H 1.08991 * 109.47400 * 59.99579 * 3 2 1 33 33 H 0.96998 * 119.99801 * 264.99865 * 4 2 1 34 34 H 1.08001 * 120.38701 * 0.02562 * 6 5 4 35 35 H 1.08002 * 120.79675 * 180.28092 * 7 6 5 36 36 H 1.09005 * 109.46867 * 150.02849 * 13 12 11 37 37 H 1.09000 * 109.47235 * 30.02889 * 13 12 11 38 38 H 0.97005 * 119.99878 * 179.97438 * 18 17 15 39 39 H 1.08004 * 119.65707 * 180.25825 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1510 -2.0722 1.1945 6 6 1.8179 -2.7933 0.0505 7 6 1.9576 -4.1663 0.0551 8 6 2.4226 -4.7845 1.2220 9 6 2.5857 -6.2576 1.2787 10 7 2.3282 -7.1051 0.3159 11 8 2.5668 -8.2365 0.6820 12 6 3.0109 -8.2259 1.9427 13 6 3.4147 -9.4263 2.7594 14 16 1.9736 -10.0615 3.6517 15 6 2.7117 -11.4191 4.4981 16 1 3.7633 -11.6288 4.3689 17 6 1.9420 -12.2186 5.3318 18 7 0.6605 -11.9627 5.4897 19 14 2.7243 -13.6584 6.2286 20 1 3.2330 -13.2027 7.5473 21 1 1.7113 -14.7252 6.4306 22 1 3.8506 -14.1916 5.4209 23 7 3.0233 -6.9770 2.3370 24 6 2.7353 -3.9972 2.3264 25 7 2.5931 -2.6879 2.2810 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 2.2490 -0.1821 1.9895 34 1 1.4588 -2.2835 -0.8313 35 1 1.7111 -4.7502 -0.8194 36 1 4.1857 -9.1371 3.4736 37 1 3.8035 -10.2012 2.0988 38 1 0.1224 -12.5216 6.0720 39 1 3.0988 -4.4642 3.2299 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119456016.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:01 Heat of formation + Delta-G solvation = 79.639861 kcal Electronic energy + Delta-G solvation = -22618.382637 eV Core-core repulsion = 19075.558404 eV Total energy + Delta-G solvation = -3542.824233 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -46.55086 -41.39876 -38.24626 -36.90811 -35.01818 -34.59059 -33.40522 -32.97287 -30.24906 -29.83897 -28.09039 -27.67643 -25.77264 -24.79954 -24.12656 -22.46456 -21.71282 -19.92594 -19.22396 -19.06307 -18.41760 -17.78528 -16.87990 -16.84283 -16.36193 -16.16351 -15.72318 -15.55480 -15.53148 -14.80641 -14.79520 -14.59242 -14.17426 -13.98862 -13.59452 -13.40510 -13.26437 -13.15804 -13.03874 -12.88096 -12.84283 -12.80313 -12.33387 -12.19688 -12.05047 -11.93695 -11.44167 -11.14158 -10.88729 -10.81225 -10.63765 -10.37464 -8.74871 -8.73806 -8.37291 -6.16709 -0.39693 0.10301 0.22045 1.22990 1.42637 1.45988 1.56330 1.64582 1.81891 2.02305 2.24124 2.45976 2.81361 2.88304 2.99807 3.26698 3.53040 3.79922 3.84485 3.88832 3.95886 4.09581 4.14797 4.23454 4.35439 4.41331 4.62717 4.65974 4.75976 4.79118 4.82035 4.92433 4.96176 4.97098 5.15048 5.26951 5.35987 5.40657 5.44293 5.97232 6.20157 6.46594 7.02787 7.05278 7.05655 8.72116 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.032889 B = 0.002076 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.145658 B =13481.525272 C =13773.837543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.139 3.861 3 C -0.156 4.156 4 N -0.706 5.706 5 C 0.412 3.588 6 C -0.232 4.232 7 C 0.002 3.998 8 C -0.159 4.159 9 C 0.227 3.773 10 N -0.399 5.399 11 O 0.072 5.928 12 C 0.227 3.773 13 C -0.018 4.018 14 S -0.151 6.151 15 C -0.536 4.536 16 H 0.092 0.908 17 C 0.017 3.983 18 N -0.910 5.910 19 Si 0.999 3.001 20 H -0.270 1.270 21 H -0.279 1.279 22 H -0.256 1.256 23 N -0.490 5.490 24 C 0.199 3.801 25 N -0.561 5.561 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.408 0.592 34 H 0.168 0.832 35 H 0.148 0.852 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.272 0.728 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.609 24.216 -13.149 27.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.035 3.965 3 C -0.213 4.213 4 N -0.337 5.337 5 C 0.174 3.826 6 C -0.257 4.257 7 C -0.025 4.025 8 C -0.166 4.166 9 C -0.043 4.043 10 N -0.110 5.110 11 O 0.016 5.984 12 C 0.006 3.994 13 C -0.167 4.167 14 S 0.076 5.924 15 C -0.684 4.684 16 H 0.110 0.890 17 C -0.188 4.188 18 N -0.546 5.546 19 Si 0.821 3.179 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.180 1.180 23 N -0.225 5.225 24 C 0.038 3.962 25 N -0.279 5.279 26 H 0.075 0.925 27 H 0.105 0.895 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.245 0.755 34 H 0.185 0.815 35 H 0.166 0.834 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.081 0.919 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 2.279 25.703 -13.055 28.919 hybrid contribution 1.160 -2.013 0.470 2.371 sum 3.439 23.690 -12.585 27.045 Atomic orbital electron populations 1.22311 0.94968 1.02172 1.03341 1.21277 0.94252 0.94035 0.86977 1.22037 1.01739 0.93475 1.04071 1.44895 1.69722 1.01305 1.17775 1.18839 0.87895 0.86767 0.89063 1.21555 1.10590 0.93323 1.00188 1.21464 0.90326 0.94709 0.96029 1.18109 1.14132 0.85594 0.98780 1.23988 0.98019 0.96989 0.85342 1.74780 1.22838 0.89995 1.23403 1.85243 1.60231 1.24550 1.28358 1.27996 0.92896 0.94998 0.83488 1.21801 1.03005 0.92235 0.99678 1.85288 1.12029 1.37982 1.57134 1.23104 0.98813 1.14402 1.32059 0.89006 1.26094 0.95235 1.00846 0.96674 1.70150 1.07231 1.40019 1.37198 0.84936 0.78130 0.76519 0.78342 1.19495 1.20462 1.18002 1.72004 1.22137 1.01463 1.26882 1.22514 0.89688 0.87394 0.96633 1.67310 1.22129 1.10720 1.27757 0.92469 0.89479 0.93403 0.89069 0.92036 0.89051 0.91632 0.75542 0.81460 0.83392 0.85744 0.85553 0.91884 0.81956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 9.40 71.98 0.68 -0.72 16 2 C 0.14 1.14 2.87 44.99 0.13 1.27 16 3 C -0.16 -0.74 9.38 71.98 0.68 -0.06 16 4 N -0.71 -9.96 5.24 -324.53 -1.70 -11.66 16 5 C 0.41 8.59 7.62 133.14 1.02 9.61 16 6 C -0.23 -4.36 8.81 22.47 0.20 -4.17 16 7 C 0.00 0.04 9.81 22.64 0.22 0.26 16 8 C -0.16 -4.71 5.89 -19.94 -0.12 -4.82 16 9 C 0.23 7.99 7.81 137.24 1.07 9.06 16 10 N -0.40 -14.33 11.93 -59.06 -0.70 -15.03 16 11 O 0.07 2.65 11.29 74.65 0.84 3.49 16 12 C 0.23 8.55 7.75 88.36 0.68 9.23 16 13 C -0.02 -0.69 6.30 71.24 0.45 -0.24 16 14 S -0.15 -7.68 21.42 -56.49 -1.21 -8.89 16 15 C -0.54 -28.77 9.50 67.96 0.65 -28.12 16 16 H 0.09 4.55 7.80 -2.91 -0.02 4.52 16 17 C 0.02 0.91 5.49 84.86 0.47 1.37 16 18 N -0.91 -53.36 13.22 21.65 0.29 -53.07 16 19 Si 1.00 41.91 29.55 68.60 2.03 43.94 16 20 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 21 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 22 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 23 N -0.49 -18.62 11.27 -302.45 -3.41 -22.03 16 24 C 0.20 5.70 10.86 84.93 0.92 6.63 16 25 N -0.56 -14.69 10.38 -192.47 -2.00 -16.69 16 26 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.05 0.55 7.64 -2.39 -0.02 0.53 16 29 H 0.09 0.65 6.43 -2.39 -0.02 0.64 16 30 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.09 0.17 8.14 -2.38 -0.02 0.15 16 32 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.41 5.37 8.72 -92.71 -0.81 4.56 16 34 H 0.17 2.03 6.04 -2.91 -0.02 2.01 16 35 H 0.15 3.19 7.94 -2.91 -0.02 3.16 16 36 H 0.12 4.41 8.14 -2.39 -0.02 4.39 16 37 H 0.13 4.20 8.14 -2.40 -0.02 4.18 16 38 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 39 H 0.16 4.73 7.88 -2.91 -0.02 4.71 16 Total: -1.00 -68.03 354.89 1.46 -66.58 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.29 Total: 14.06 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 7.04 Total: -0.70 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -7.52 Total: -118.48 kcal Atomic # 8 Polarization: 2.65 SS G_CDS: 0.84 Total: 3.49 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: -7.68 SS G_CDS: -1.21 Total: -8.89 kcal Total: -68.03 1.46 -66.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119456016.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.215 kcal (2) G-P(sol) polarization free energy of solvation -68.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds