Wall clock time and date at job start Tue Mar 31 2020 12:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.67895 * 2 1 4 4 C 1.53192 * 109.57836 * 120.32017 * 2 1 3 5 5 C 1.50693 * 109.08452 * 63.04369 * 4 2 1 6 6 O 1.21524 * 119.70792 * 208.82512 * 5 4 2 7 7 C 1.39947 * 120.58431 * 28.84192 * 5 4 2 8 8 C 1.35021 * 121.67788 * 0.14452 * 7 5 4 9 9 N 1.36485 * 119.41472 * 180.26332 * 8 7 5 10 10 C 1.38613 * 120.00098 * 235.93568 * 9 8 7 11 11 N 1.32743 * 119.42750 * 359.53449 * 10 9 8 12 12 C 1.31425 * 121.74841 * 179.97438 * 11 10 9 13 13 C 1.40843 * 120.38370 * 0.27420 * 12 11 10 14 14 C 1.41164 * 120.56862 * 179.70075 * 13 12 11 15 15 H 1.07998 * 119.99700 * 23.08275 * 14 13 12 16 16 C 1.39906 * 119.99931 * 203.08532 * 14 13 12 17 17 N 1.30872 * 119.99941 * 17.19205 * 16 14 13 18 18 Si 1.86798 * 120.00114 * 197.18709 * 16 14 13 19 19 H 1.48504 * 109.46990 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46991 * 119.99717 * 18 16 14 21 21 H 1.48494 * 109.47537 * 240.00225 * 18 16 14 22 22 C 1.41270 * 118.86136 * 359.48185 * 13 12 11 23 23 C 1.36707 * 118.38851 * 0.50487 * 22 13 12 24 24 Cl 1.73597 * 120.26042 * 179.70545 * 23 22 13 25 25 C 1.50536 * 121.16830 * 0.53428 * 8 7 5 26 26 H 1.09006 * 109.46691 * 299.67875 * 1 2 3 27 27 H 1.08998 * 109.47445 * 59.68105 * 1 2 3 28 28 H 1.09002 * 109.46930 * 179.68359 * 1 2 3 29 29 H 1.08998 * 109.47360 * 180.32086 * 3 2 1 30 30 H 1.08998 * 109.46685 * 300.32049 * 3 2 1 31 31 H 1.09000 * 109.46852 * 60.31427 * 3 2 1 32 32 H 1.09008 * 109.53342 * 303.16543 * 4 2 1 33 33 H 1.08995 * 109.54010 * 182.92818 * 4 2 1 34 34 H 1.07994 * 119.15764 * 180.16358 * 7 5 4 35 35 H 0.97004 * 119.99896 * 55.93521 * 9 8 7 36 36 H 1.07996 * 119.80504 * 180.02562 * 12 11 10 37 37 H 0.97002 * 119.99872 * 180.02562 * 17 16 14 38 38 H 1.07995 * 120.80360 * 180.23494 * 22 13 12 39 39 H 1.09005 * 109.47225 * 90.03387 * 25 8 7 40 40 H 1.09003 * 109.47323 * 210.03986 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0453 1.4407 0.0000 4 6 2.0434 -0.7287 1.2459 5 6 1.6002 -2.1680 1.1926 6 8 1.4177 -2.7806 2.2261 7 6 1.3974 -2.8054 -0.0367 8 6 1.5914 -2.1638 -1.2087 9 7 1.3745 -2.8286 -2.3808 10 6 2.3842 -2.9131 -3.3267 11 7 3.5545 -2.3352 -3.0849 12 6 4.5432 -2.3872 -3.9492 13 6 4.3831 -3.0622 -5.1750 14 6 5.4403 -3.1151 -6.1089 15 1 6.4601 -2.9851 -5.7779 16 6 5.1670 -3.3359 -7.4631 17 7 3.9544 -3.1606 -7.9230 18 14 6.5330 -3.8809 -8.6148 19 1 7.8017 -4.0065 -7.8534 20 1 6.1824 -5.1946 -9.2118 21 1 6.7007 -2.8754 -9.6946 22 6 3.1478 -3.6894 -5.4518 23 6 2.1525 -3.6051 -4.5184 24 17 0.6128 -4.3513 -4.8116 25 6 2.0484 -0.7300 -1.2456 26 1 -0.3633 0.5089 0.8929 27 1 -0.3634 0.5188 -0.8871 28 1 -0.3633 -1.0277 -0.0057 29 1 3.1352 1.4368 -0.0058 30 1 1.6791 1.9574 -0.8871 31 1 1.6884 1.9541 0.8928 32 1 1.6360 -0.2547 2.1391 33 1 3.1321 -0.6832 1.2722 34 1 1.0772 -3.8368 -0.0480 35 1 0.5138 -3.2421 -2.5518 36 1 5.4825 -1.9061 -3.7199 37 1 3.7648 -3.3140 -8.8618 38 1 2.9921 -4.2187 -6.3801 39 1 3.1378 -0.6962 -1.2640 40 1 1.6547 -0.2459 -2.1394 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158956257.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:19 Heat of formation + Delta-G solvation = -11.914013 kcal Electronic energy + Delta-G solvation = -24366.454504 eV Core-core repulsion = 20785.323740 eV Total energy + Delta-G solvation = -3581.130764 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.103 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.39403 -39.03819 -37.33333 -35.98273 -35.78259 -34.09392 -31.48047 -30.82046 -29.43385 -28.29924 -27.39603 -26.82539 -25.37602 -22.90450 -21.85364 -20.69912 -20.05636 -17.73737 -17.31662 -17.23792 -16.52164 -15.62235 -15.47721 -14.94959 -14.74034 -14.48799 -14.29170 -13.97893 -13.76931 -13.39985 -13.28585 -12.97983 -12.48201 -12.25520 -12.14030 -12.02605 -11.89830 -11.64804 -11.61475 -11.40557 -11.31496 -11.14103 -10.95820 -10.76968 -10.60538 -10.59426 -10.17584 -9.95407 -9.48076 -9.27212 -8.67372 -8.42499 -8.41267 -7.24147 -7.02010 -4.60933 1.21061 2.25516 2.56117 2.91280 2.91907 2.95605 2.98333 3.34416 3.68291 3.73078 4.29525 4.54720 4.65875 4.81692 4.92737 5.23241 5.29262 5.39327 5.50355 5.58187 5.61901 5.71140 5.73971 5.81326 5.89641 5.96819 6.07547 6.15253 6.17441 6.25687 6.34553 6.40355 6.53782 6.61974 6.72038 6.81871 6.91733 7.39993 7.40454 7.85247 7.87798 8.04027 8.11199 8.37943 8.42880 9.18396 9.83119 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.018293 B = 0.003536 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.261668 B = 7916.220179 C = 8566.333230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.056 4.056 3 C -0.138 4.138 4 C -0.159 4.159 5 C 0.407 3.593 6 O -0.502 6.502 7 C -0.344 4.344 8 C 0.290 3.710 9 N -0.674 5.674 10 C 0.242 3.758 11 N -0.480 5.480 12 C 0.010 3.990 13 C 0.051 3.949 14 C -0.438 4.438 15 H 0.089 0.911 16 C 0.072 3.928 17 N -0.784 5.784 18 Si 0.914 3.086 19 H -0.257 1.257 20 H -0.270 1.270 21 H -0.272 1.272 22 C -0.100 4.100 23 C -0.077 4.077 24 Cl -0.108 7.108 25 C -0.094 4.094 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.123 0.877 35 H 0.412 0.588 36 H 0.139 0.861 37 H 0.287 0.713 38 H 0.144 0.856 39 H 0.108 0.892 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.607 5.241 5.435 8.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.057 4.057 3 C -0.196 4.196 4 C -0.196 4.196 5 C 0.292 3.708 6 O -0.383 6.383 7 C -0.368 4.368 8 C 0.186 3.814 9 N -0.304 5.304 10 C 0.012 3.988 11 N -0.193 5.193 12 C -0.151 4.151 13 C 0.046 3.954 14 C -0.468 4.468 15 H 0.107 0.893 16 C -0.148 4.148 17 N -0.409 5.409 18 Si 0.738 3.262 19 H -0.181 1.181 20 H -0.195 1.195 21 H -0.197 1.197 22 C -0.127 4.127 23 C -0.109 4.109 24 Cl -0.080 7.080 25 C -0.132 4.132 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.141 0.859 35 H 0.251 0.749 36 H 0.157 0.843 37 H 0.098 0.902 38 H 0.161 0.839 39 H 0.126 0.874 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.746 5.360 6.455 9.189 hybrid contribution -0.132 -0.976 -1.805 2.056 sum -3.878 4.383 4.651 7.475 Atomic orbital electron populations 1.21990 0.94295 1.02431 1.01913 1.20646 0.95883 0.95540 0.93636 1.21820 1.01378 0.94456 1.01920 1.22215 1.03038 0.95274 0.99098 1.20266 0.73031 0.89000 0.88551 1.90554 1.43253 1.67395 1.37135 1.21681 1.20602 1.01628 0.92921 1.20069 0.84541 0.91144 0.85634 1.41082 1.14612 1.58876 1.15871 1.17169 0.88769 1.04168 0.88647 1.66648 0.99014 1.20011 1.33619 1.22363 0.96443 1.03513 0.92769 1.18394 0.92837 0.90851 0.93336 1.19531 0.94727 1.41399 0.91125 0.89340 1.26011 0.96855 0.92407 0.99492 1.69770 1.21291 1.32988 1.16817 0.86137 0.81310 0.79182 0.79557 1.18072 1.19464 1.19702 1.21344 0.92309 1.00354 0.98674 1.20892 0.87960 1.05226 0.96790 1.98266 1.31541 1.82164 1.96001 1.21202 1.03566 0.90720 0.97759 0.92452 0.92242 0.92261 0.92118 0.92224 0.92444 0.89415 0.88448 0.85915 0.74862 0.84315 0.90215 0.83870 0.87417 0.89925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.11 37.16 0.30 -1.33 16 2 C -0.06 -0.64 0.78 -154.20 -0.12 -0.76 16 3 C -0.14 -1.31 8.50 37.16 0.32 -0.99 16 4 C -0.16 -1.97 4.87 -27.79 -0.14 -2.10 16 5 C 0.41 6.50 6.07 -33.67 -0.20 6.30 16 6 O -0.50 -9.60 17.82 5.34 0.10 -9.50 16 7 C -0.34 -5.56 8.66 -40.08 -0.35 -5.90 16 8 C 0.29 4.57 4.96 -81.74 -0.41 4.17 16 9 N -0.67 -11.58 5.19 -8.36 -0.04 -11.63 16 10 C 0.24 4.90 7.30 -154.88 -1.13 3.77 16 11 N -0.48 -9.99 8.15 -11.71 -0.10 -10.08 16 12 C 0.01 0.22 10.97 -16.74 -0.18 0.04 16 13 C 0.05 1.19 5.60 -106.65 -0.60 0.59 16 14 C -0.44 -10.05 9.07 -37.85 -0.34 -10.39 16 15 H 0.09 1.92 7.90 -52.49 -0.41 1.50 16 16 C 0.07 1.58 5.18 -17.34 -0.09 1.49 16 17 N -0.78 -17.95 10.87 55.55 0.60 -17.34 16 18 Si 0.91 16.56 29.59 -169.99 -5.03 11.53 16 19 H -0.26 -4.62 7.11 56.52 0.40 -4.21 16 20 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 21 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 22 C -0.10 -2.31 8.53 -38.98 -0.33 -2.64 16 23 C -0.08 -1.62 6.32 -39.58 -0.25 -1.87 16 24 Cl -0.11 -1.94 27.56 -51.86 -1.43 -3.37 16 25 C -0.09 -1.31 3.82 -27.76 -0.11 -1.42 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.72 6.13 -51.93 -0.32 0.40 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.99 8.14 -51.92 -0.42 0.57 16 33 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.12 2.07 8.06 -52.49 -0.42 1.64 16 35 H 0.41 6.52 7.42 -40.82 -0.30 6.22 16 36 H 0.14 2.71 8.06 -52.49 -0.42 2.29 16 37 H 0.29 5.97 8.30 -40.82 -0.34 5.63 16 38 H 0.14 3.43 6.14 -52.49 -0.32 3.11 16 39 H 0.11 1.62 7.50 -51.93 -0.39 1.23 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 343.88 15.07 5.18 5.18 Total: -1.00 -25.28 343.88 -9.46 -34.73 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -5.11 Total: 11.54 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -3.63 Total: -11.06 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.47 Total: -39.05 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.10 Total: -9.50 kcal Atomic # 14 Polarization: 16.56 SS G_CDS: -5.03 Total: 11.53 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -1.43 Total: -3.37 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -25.28 -9.46 -34.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158956257.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.818 kcal (2) G-P(sol) polarization free energy of solvation -25.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds