Wall clock time and date at job start Tue Mar 31 2020 12:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.67895 * 2 1 4 4 C 1.53192 * 109.57836 * 120.32017 * 2 1 3 5 5 C 1.50693 * 109.08452 * 63.04369 * 4 2 1 6 6 O 1.21524 * 119.70792 * 208.82512 * 5 4 2 7 7 C 1.39947 * 120.58431 * 28.84192 * 5 4 2 8 8 C 1.35021 * 121.67788 * 0.14452 * 7 5 4 9 9 N 1.36485 * 119.41472 * 180.26332 * 8 7 5 10 10 C 1.38613 * 120.00098 * 235.93568 * 9 8 7 11 11 N 1.32743 * 119.42750 * 359.53449 * 10 9 8 12 12 C 1.31425 * 121.74841 * 179.97438 * 11 10 9 13 13 C 1.40843 * 120.38370 * 0.27420 * 12 11 10 14 14 C 1.41164 * 120.56862 * 179.70075 * 13 12 11 15 15 H 1.07998 * 119.99700 * 23.08275 * 14 13 12 16 16 C 1.39906 * 119.99931 * 203.08532 * 14 13 12 17 17 N 1.30872 * 119.99941 * 17.19205 * 16 14 13 18 18 Si 1.86798 * 120.00114 * 197.18709 * 16 14 13 19 19 H 1.48504 * 109.46990 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46991 * 119.99717 * 18 16 14 21 21 H 1.48494 * 109.47537 * 240.00225 * 18 16 14 22 22 C 1.41270 * 118.86136 * 359.48185 * 13 12 11 23 23 C 1.36707 * 118.38851 * 0.50487 * 22 13 12 24 24 Cl 1.73597 * 120.26042 * 179.70545 * 23 22 13 25 25 C 1.50536 * 121.16830 * 0.53428 * 8 7 5 26 26 H 1.09006 * 109.46691 * 299.67875 * 1 2 3 27 27 H 1.08998 * 109.47445 * 59.68105 * 1 2 3 28 28 H 1.09002 * 109.46930 * 179.68359 * 1 2 3 29 29 H 1.08998 * 109.47360 * 180.32086 * 3 2 1 30 30 H 1.08998 * 109.46685 * 300.32049 * 3 2 1 31 31 H 1.09000 * 109.46852 * 60.31427 * 3 2 1 32 32 H 1.09008 * 109.53342 * 303.16543 * 4 2 1 33 33 H 1.08995 * 109.54010 * 182.92818 * 4 2 1 34 34 H 1.07994 * 119.15764 * 180.16358 * 7 5 4 35 35 H 0.97004 * 119.99896 * 55.93521 * 9 8 7 36 36 H 1.07996 * 119.80504 * 180.02562 * 12 11 10 37 37 H 0.97002 * 119.99872 * 180.02562 * 17 16 14 38 38 H 1.07995 * 120.80360 * 180.23494 * 22 13 12 39 39 H 1.09005 * 109.47225 * 90.03387 * 25 8 7 40 40 H 1.09003 * 109.47323 * 210.03986 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0453 1.4407 0.0000 4 6 2.0434 -0.7287 1.2459 5 6 1.6002 -2.1680 1.1926 6 8 1.4177 -2.7806 2.2261 7 6 1.3974 -2.8054 -0.0367 8 6 1.5914 -2.1638 -1.2087 9 7 1.3745 -2.8286 -2.3808 10 6 2.3842 -2.9131 -3.3267 11 7 3.5545 -2.3352 -3.0849 12 6 4.5432 -2.3872 -3.9492 13 6 4.3831 -3.0622 -5.1750 14 6 5.4403 -3.1151 -6.1089 15 1 6.4601 -2.9851 -5.7779 16 6 5.1670 -3.3359 -7.4631 17 7 3.9544 -3.1606 -7.9230 18 14 6.5330 -3.8809 -8.6148 19 1 7.8017 -4.0065 -7.8534 20 1 6.1824 -5.1946 -9.2118 21 1 6.7007 -2.8754 -9.6946 22 6 3.1478 -3.6894 -5.4518 23 6 2.1525 -3.6051 -4.5184 24 17 0.6128 -4.3513 -4.8116 25 6 2.0484 -0.7300 -1.2456 26 1 -0.3633 0.5089 0.8929 27 1 -0.3634 0.5188 -0.8871 28 1 -0.3633 -1.0277 -0.0057 29 1 3.1352 1.4368 -0.0058 30 1 1.6791 1.9574 -0.8871 31 1 1.6884 1.9541 0.8928 32 1 1.6360 -0.2547 2.1391 33 1 3.1321 -0.6832 1.2722 34 1 1.0772 -3.8368 -0.0480 35 1 0.5138 -3.2421 -2.5518 36 1 5.4825 -1.9061 -3.7199 37 1 3.7648 -3.3140 -8.8618 38 1 2.9921 -4.2187 -6.3801 39 1 3.1378 -0.6962 -1.2640 40 1 1.6547 -0.2459 -2.1394 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158956257.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:18 Heat of formation + Delta-G solvation = -22.164739 kcal Electronic energy + Delta-G solvation = -24366.899009 eV Core-core repulsion = 20785.323740 eV Total energy + Delta-G solvation = -3581.575269 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.103 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.66392 -40.59242 -38.67897 -37.44802 -37.19493 -35.68780 -32.86243 -32.49669 -30.92847 -29.54486 -28.31995 -27.79468 -26.97884 -24.46464 -23.47015 -22.13955 -21.15799 -19.40902 -18.78217 -18.53377 -17.81220 -17.18488 -16.71164 -16.40749 -16.05826 -15.99795 -15.48540 -15.29991 -14.98654 -14.89472 -14.70200 -14.08280 -14.05068 -13.69776 -13.33939 -13.16083 -13.11234 -12.93997 -12.89955 -12.74038 -12.62165 -12.52239 -12.17084 -12.05362 -11.77863 -11.67598 -11.59467 -11.43888 -11.01166 -10.56007 -10.30407 -10.08449 -9.89530 -8.84751 -8.62671 -6.31815 -0.12333 0.58904 0.89821 1.29574 1.43705 1.50794 1.57910 2.03543 2.19396 2.31089 2.65265 3.44498 3.53566 3.65364 3.78060 3.87293 4.01380 4.23786 4.36120 4.39491 4.53012 4.67287 4.70243 4.72754 4.79653 4.90757 4.97785 4.99142 5.03984 5.12497 5.19029 5.21850 5.23525 5.30383 5.37472 5.44763 5.50005 5.69377 5.74104 6.25062 6.39140 6.48801 6.70628 6.74432 6.76636 7.52011 8.22311 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.018293 B = 0.003536 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.261668 B = 7916.220179 C = 8566.333230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.048 4.048 3 C -0.135 4.135 4 C -0.153 4.153 5 C 0.406 3.594 6 O -0.538 6.538 7 C -0.347 4.347 8 C 0.291 3.709 9 N -0.672 5.672 10 C 0.248 3.752 11 N -0.481 5.481 12 C 0.007 3.993 13 C 0.027 3.973 14 C -0.466 4.466 15 H 0.093 0.907 16 C 0.037 3.963 17 N -0.816 5.816 18 Si 0.982 3.018 19 H -0.254 1.254 20 H -0.269 1.269 21 H -0.267 1.267 22 C -0.117 4.117 23 C -0.088 4.088 24 Cl -0.083 7.083 25 C -0.090 4.090 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.417 0.583 36 H 0.156 0.844 37 H 0.292 0.708 38 H 0.129 0.871 39 H 0.101 0.899 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.398 6.523 5.982 9.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.048 4.048 3 C -0.192 4.192 4 C -0.190 4.190 5 C 0.294 3.706 6 O -0.422 6.422 7 C -0.371 4.371 8 C 0.189 3.811 9 N -0.303 5.303 10 C 0.017 3.983 11 N -0.194 5.194 12 C -0.154 4.154 13 C 0.021 3.979 14 C -0.495 4.495 15 H 0.111 0.889 16 C -0.180 4.180 17 N -0.441 5.441 18 Si 0.803 3.197 19 H -0.177 1.177 20 H -0.194 1.194 21 H -0.192 1.192 22 C -0.144 4.144 23 C -0.119 4.119 24 Cl -0.055 7.055 25 C -0.128 4.128 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.258 0.742 36 H 0.173 0.827 37 H 0.103 0.897 38 H 0.147 0.853 39 H 0.119 0.881 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.559 6.655 7.024 10.310 hybrid contribution -0.334 -1.402 -1.882 2.370 sum -3.893 5.254 5.142 8.319 Atomic orbital electron populations 1.22007 0.93835 1.01704 1.03158 1.20621 0.96185 0.96423 0.91596 1.21802 1.01631 0.92745 1.03041 1.22225 1.03817 0.92581 1.00376 1.20716 0.71804 0.90547 0.87571 1.90544 1.44995 1.68608 1.38039 1.21720 1.20567 1.01308 0.93545 1.20324 0.84040 0.91954 0.84798 1.41060 1.14293 1.59236 1.15727 1.17368 0.89141 1.03012 0.88740 1.66733 0.99092 1.20173 1.33402 1.22647 0.97239 1.03112 0.92368 1.18673 0.93309 0.91608 0.94273 1.19782 0.94946 1.42886 0.91933 0.88852 1.26756 0.98848 0.91833 1.00524 1.69816 1.22961 1.33830 1.17491 0.85131 0.78543 0.78561 0.77476 1.17693 1.19392 1.19229 1.21280 0.93195 1.01169 0.98766 1.20955 0.88818 1.05409 0.96758 1.98263 1.29616 1.81690 1.95952 1.21223 1.03020 0.89477 0.99124 0.90798 0.91508 0.93950 0.91765 0.91868 0.90620 0.87610 0.87190 0.87149 0.74223 0.82650 0.89664 0.85340 0.88100 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.11 71.98 0.58 -2.34 16 2 C -0.05 -0.97 0.78 -51.98 -0.04 -1.01 16 3 C -0.14 -2.10 8.50 71.98 0.61 -1.49 16 4 C -0.15 -3.41 4.87 29.91 0.15 -3.26 16 5 C 0.41 12.56 6.07 26.10 0.16 12.72 16 6 O -0.54 -20.31 17.82 -3.79 -0.07 -20.38 16 7 C -0.35 -11.04 8.66 21.94 0.19 -10.85 16 8 C 0.29 8.93 4.96 41.04 0.20 9.14 16 9 N -0.67 -22.69 5.19 -180.37 -0.94 -23.63 16 10 C 0.25 9.96 7.30 133.24 0.97 10.93 16 11 N -0.48 -19.78 8.15 -190.96 -1.56 -21.33 16 12 C 0.01 0.30 10.97 85.39 0.94 1.24 16 13 C 0.03 1.26 5.60 -21.18 -0.12 1.15 16 14 C -0.47 -21.61 9.07 23.39 0.21 -21.40 16 15 H 0.09 4.07 7.90 -2.91 -0.02 4.04 16 16 C 0.04 1.64 5.18 85.24 0.44 2.08 16 17 N -0.82 -37.91 10.87 21.82 0.24 -37.67 16 18 Si 0.98 33.77 29.59 68.60 2.03 35.80 16 19 H -0.25 -8.48 7.11 99.48 0.71 -7.77 16 20 H -0.27 -9.14 7.11 99.48 0.71 -8.43 16 21 H -0.27 -8.93 7.11 99.48 0.71 -8.22 16 22 C -0.12 -5.50 8.53 22.66 0.19 -5.31 16 23 C -0.09 -3.70 6.32 22.27 0.14 -3.56 16 24 Cl -0.08 -2.97 27.56 -2.72 -0.07 -3.05 16 25 C -0.09 -2.37 3.82 29.93 0.11 -2.26 16 26 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.04 0.96 6.13 -2.39 -0.01 0.95 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 33 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.11 3.75 8.06 -2.91 -0.02 3.73 16 35 H 0.42 12.97 7.42 -92.71 -0.69 12.29 16 36 H 0.16 5.99 8.06 -2.91 -0.02 5.97 16 37 H 0.29 12.32 8.30 -92.71 -0.77 11.55 16 38 H 0.13 6.35 6.14 -2.91 -0.02 6.33 16 39 H 0.10 2.87 7.50 -2.38 -0.02 2.85 16 40 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -54.36 343.88 4.77 -49.59 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: 0.39 Total: 34.86 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: 4.75 Total: -14.21 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -2.26 Total: -82.63 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.07 Total: -20.38 kcal Atomic # 14 Polarization: 33.77 SS G_CDS: 2.03 Total: 35.80 kcal Atomic # 17 Polarization: -2.97 SS G_CDS: -0.07 Total: -3.05 kcal Total: -54.36 4.77 -49.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158956257.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.429 kcal (2) G-P(sol) polarization free energy of solvation -54.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds