Wall clock time and date at job start Tue Mar 31 2020 13:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46968 * 2 1 4 4 O 1.42890 * 109.47515 * 119.99978 * 2 1 3 5 5 C 1.36017 * 116.99915 * 90.00103 * 4 2 1 6 6 C 1.39008 * 119.99835 * 90.00436 * 5 4 2 7 7 F 1.35106 * 119.87100 * 0.02562 * 6 5 4 8 8 C 1.38622 * 120.25405 * 180.02562 * 6 5 4 9 9 C 1.37832 * 120.23774 * 359.97438 * 8 6 5 10 10 C 1.39784 * 119.98637 * 0.02562 * 9 8 6 11 11 C 1.47638 * 120.12823 * 179.97438 * 10 9 8 12 12 N 1.32914 * 120.25803 * 231.66444 * 11 10 9 13 13 C 1.31998 * 120.07617 * 180.02562 * 12 11 10 14 14 C 1.39201 * 120.59691 * 0.02562 * 13 12 11 15 15 N 1.31604 * 120.51851 * 359.97438 * 14 13 12 16 16 C 1.33971 * 119.90464 * 0.02562 * 15 14 13 17 17 C 1.40743 * 120.28954 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00101 * 188.62948 * 17 16 15 19 19 C 1.40153 * 120.00293 * 8.63906 * 17 16 15 20 20 N 1.30702 * 119.99613 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00327 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.47309 * 89.99546 * 21 19 17 23 23 H 1.48505 * 109.47025 * 209.99799 * 21 19 17 24 24 H 1.48497 * 109.46639 * 329.99383 * 21 19 17 25 25 C 1.38512 * 119.99450 * 270.25603 * 5 4 2 26 26 F 1.35103 * 120.12070 * 0.02562 * 25 5 4 27 27 H 1.08993 * 109.47042 * 299.99594 * 1 2 3 28 28 H 1.08997 * 109.47042 * 60.00168 * 1 2 3 29 29 H 1.08997 * 109.46584 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47158 * 240.00926 * 2 1 3 31 31 H 1.09004 * 109.47427 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47511 * 300.00084 * 3 2 1 33 33 H 1.09000 * 109.47257 * 60.00143 * 3 2 1 34 34 H 1.08002 * 119.87624 * 179.97438 * 8 6 5 35 35 H 1.08002 * 120.00982 * 180.02562 * 9 8 6 36 36 H 1.07997 * 119.70177 * 179.97438 * 13 12 11 37 37 H 1.08001 * 119.73716 * 179.69796 * 14 13 12 38 38 H 0.97000 * 119.99502 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2123 -2.0142 1.0649 6 6 3.4525 -2.4985 0.6654 7 9 4.4517 -1.6353 0.3793 8 6 3.6680 -3.8638 0.5593 9 6 2.6541 -4.7512 0.8498 10 6 1.4030 -4.2751 1.2524 11 6 0.3146 -5.2228 1.5638 12 7 -0.8786 -5.0824 0.9955 13 6 -1.8493 -5.9315 1.2768 14 6 -1.6377 -6.9795 2.1682 15 7 -0.4655 -7.1404 2.7443 16 6 0.5341 -6.2906 2.4736 17 6 1.7909 -6.4548 3.0855 18 1 2.5489 -5.6934 2.9752 19 6 2.0589 -7.6065 3.8379 20 7 1.1415 -8.5278 3.9716 21 14 3.7271 -7.8248 4.6495 22 1 3.6935 -7.2419 6.0148 23 1 4.0495 -9.2718 4.7369 24 1 4.7645 -7.1345 3.8419 25 6 1.1845 -2.8966 1.3543 26 9 -0.0234 -2.4282 1.7374 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8901 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 4.6339 -4.2334 0.2479 35 1 2.8262 -5.8141 0.7663 36 1 -2.8167 -5.8115 0.8119 37 1 -2.4432 -7.6632 2.3921 38 1 1.3268 -9.3247 4.4927 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236338659.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:47 Heat of formation + Delta-G solvation = -68.274218 kcal Electronic energy + Delta-G solvation = -26987.786041 eV Core-core repulsion = 22852.414635 eV Total energy + Delta-G solvation = -4135.371406 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.108 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.66464 -48.30536 -39.51370 -38.98169 -37.28167 -34.29026 -33.19452 -32.36826 -31.25682 -29.51767 -28.48259 -27.22207 -26.27959 -23.62471 -22.88080 -22.03219 -21.58374 -20.74675 -18.04163 -17.85835 -17.39792 -17.04047 -16.23574 -15.88535 -15.49612 -15.20976 -15.01967 -14.91770 -14.44625 -14.33648 -14.25586 -13.90063 -13.47581 -13.20938 -12.99103 -12.61626 -12.57076 -12.42026 -12.22322 -11.80111 -11.66907 -11.52590 -11.38331 -11.36646 -11.25671 -10.85046 -10.69533 -10.39863 -9.99237 -9.84508 -9.71056 -9.31217 -8.48639 -8.38357 -7.79102 -7.52571 -6.73481 -4.89547 1.16125 1.31883 2.33331 2.79027 2.92530 2.95186 3.05662 3.48278 3.69596 3.85998 4.21119 4.45440 4.80316 4.89232 4.97786 5.13631 5.16148 5.17242 5.36780 5.44713 5.55747 5.62373 5.76103 5.82934 5.85341 6.00068 6.02257 6.08507 6.09713 6.29203 6.34860 6.35899 6.44345 6.61527 6.72856 6.80622 6.92595 7.02218 7.47388 7.64143 7.83545 8.17619 8.44059 9.03695 9.62740 9.89930 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.014425 B = 0.004956 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.671031 B = 5648.319942 C = 7121.655079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.082 3.918 3 C -0.147 4.147 4 O -0.315 6.315 5 C 0.021 3.979 6 C 0.085 3.915 7 F -0.135 7.135 8 C -0.155 4.155 9 C -0.052 4.052 10 C 0.004 3.996 11 C -0.045 4.045 12 N -0.401 5.401 13 C -0.113 4.113 14 C 0.094 3.906 15 N -0.451 5.451 16 C 0.226 3.774 17 C -0.401 4.401 18 H 0.097 0.903 19 C 0.065 3.935 20 N -0.701 5.701 21 Si 0.910 3.090 22 H -0.264 1.264 23 H -0.272 1.272 24 H -0.254 1.254 25 C 0.117 3.883 26 F -0.116 7.116 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.142 0.858 35 H 0.151 0.849 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.811 8.162 -5.545 10.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.027 3.973 3 C -0.204 4.204 4 O -0.232 6.232 5 C -0.024 4.024 6 C 0.065 3.935 7 F -0.113 7.113 8 C -0.174 4.174 9 C -0.072 4.072 10 C 0.001 3.999 11 C -0.191 4.191 12 N -0.113 5.113 13 C -0.276 4.276 14 C -0.078 4.078 15 N -0.167 5.167 16 C 0.102 3.898 17 C -0.430 4.430 18 H 0.115 0.885 19 C -0.163 4.163 20 N -0.320 5.320 21 Si 0.733 3.267 22 H -0.189 1.189 23 H -0.197 1.197 24 H -0.178 1.178 25 C 0.096 3.904 26 F -0.094 7.094 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.160 0.840 35 H 0.169 0.831 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.792 8.091 -5.261 10.369 hybrid contribution 0.340 -0.072 0.293 0.455 sum 4.133 8.019 -4.968 10.299 Atomic orbital electron populations 1.22384 0.95153 1.03681 1.02373 1.22438 0.94239 0.93441 0.87229 1.21851 1.01930 0.93995 1.02601 1.86174 1.85440 1.15531 1.36057 1.18358 0.91950 0.84116 1.08015 1.17727 0.84897 0.87527 1.03334 1.91457 1.58960 1.69665 1.91235 1.20969 1.01269 0.90223 1.04924 1.21170 0.90424 1.00882 0.94680 1.18434 0.94228 0.89388 0.97806 1.19740 0.92075 1.01141 1.06105 1.67700 0.99346 1.24245 1.20034 1.22577 0.98487 0.98903 1.07604 1.23590 0.96155 0.95315 0.92734 1.69555 0.98432 1.25752 1.22935 1.19162 0.93348 0.87445 0.89823 1.19805 0.97178 1.02963 1.23103 0.88462 1.26219 0.99157 0.95356 0.95560 1.70037 1.32448 1.05004 1.24497 0.86239 0.81242 0.78747 0.80478 1.18885 1.19688 1.17792 1.17900 0.80579 0.91105 1.00804 1.91486 1.41379 1.88639 1.87926 0.91617 0.91619 0.91358 0.92000 0.91809 0.90963 0.91610 0.84022 0.83099 0.85196 0.84955 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 9.20 37.16 0.34 -2.06 16 2 C 0.08 1.14 3.40 -26.73 -0.09 1.05 16 3 C -0.15 -1.60 9.56 37.16 0.36 -1.24 16 4 O -0.31 -5.49 9.42 -19.79 -0.19 -5.67 16 5 C 0.02 0.39 5.56 -39.20 -0.22 0.17 16 6 C 0.09 1.43 7.31 -39.15 -0.29 1.15 16 7 F -0.13 -2.16 17.10 2.25 0.04 -2.12 16 8 C -0.15 -2.41 10.00 -39.59 -0.40 -2.81 16 9 C -0.05 -0.94 7.68 -39.15 -0.30 -1.25 16 10 C 0.00 0.09 5.05 -104.84 -0.53 -0.44 16 11 C -0.04 -1.08 6.08 -82.13 -0.50 -1.58 16 12 N -0.40 -9.64 10.05 -8.99 -0.09 -9.73 16 13 C -0.11 -2.52 11.22 -17.12 -0.19 -2.71 16 14 C 0.09 2.14 11.22 -17.29 -0.19 1.94 16 15 N -0.45 -11.64 8.09 -10.72 -0.09 -11.72 16 16 C 0.23 5.78 6.53 -84.55 -0.55 5.23 16 17 C -0.40 -9.64 7.82 -37.92 -0.30 -9.94 16 18 H 0.10 2.18 5.72 -52.48 -0.30 1.88 16 19 C 0.07 1.50 5.49 -17.31 -0.10 1.40 16 20 N -0.70 -16.93 11.52 55.56 0.64 -16.29 16 21 Si 0.91 16.81 29.56 -169.99 -5.03 11.79 16 22 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 23 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 24 H -0.25 -4.54 7.11 56.52 0.40 -4.14 16 25 C 0.12 2.39 7.06 -38.84 -0.27 2.12 16 26 F -0.12 -2.52 14.54 2.25 0.03 -2.49 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.08 6.38 -51.93 -0.33 0.75 16 30 H 0.06 0.85 7.91 -51.93 -0.41 0.44 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.15 2.64 7.43 -52.49 -0.39 2.25 16 36 H 0.13 2.47 8.06 -52.49 -0.42 2.04 16 37 H 0.13 2.54 8.06 -52.49 -0.42 2.12 16 38 H 0.28 6.11 8.29 -40.82 -0.34 5.77 16 LS Contribution 335.39 15.07 5.05 5.05 Total: -1.00 -28.44 335.39 -6.80 -35.24 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -3.95 Total: 4.91 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -3.23 Total: -8.97 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.46 Total: -37.74 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.19 Total: -5.67 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.07 Total: -4.61 kcal Atomic # 14 Polarization: 16.81 SS G_CDS: -5.03 Total: 11.79 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.44 -6.80 -35.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236338659.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.037 kcal (2) G-P(sol) polarization free energy of solvation -28.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds