Wall clock time and date at job start Tue Mar 31 2020 13:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46968 * 2 1 4 4 O 1.42890 * 109.47515 * 119.99978 * 2 1 3 5 5 C 1.36017 * 116.99915 * 90.00103 * 4 2 1 6 6 C 1.39008 * 119.99835 * 90.00436 * 5 4 2 7 7 F 1.35106 * 119.87100 * 0.02562 * 6 5 4 8 8 C 1.38622 * 120.25405 * 180.02562 * 6 5 4 9 9 C 1.37832 * 120.23774 * 359.97438 * 8 6 5 10 10 C 1.39784 * 119.98637 * 0.02562 * 9 8 6 11 11 C 1.47638 * 120.12823 * 179.97438 * 10 9 8 12 12 N 1.32914 * 120.25803 * 231.66444 * 11 10 9 13 13 C 1.31998 * 120.07617 * 180.02562 * 12 11 10 14 14 C 1.39201 * 120.59691 * 0.02562 * 13 12 11 15 15 N 1.31604 * 120.51851 * 359.97438 * 14 13 12 16 16 C 1.33971 * 119.90464 * 0.02562 * 15 14 13 17 17 C 1.40743 * 120.28954 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00101 * 188.62948 * 17 16 15 19 19 C 1.40153 * 120.00293 * 8.63906 * 17 16 15 20 20 N 1.30702 * 119.99613 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00327 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.47309 * 89.99546 * 21 19 17 23 23 H 1.48505 * 109.47025 * 209.99799 * 21 19 17 24 24 H 1.48497 * 109.46639 * 329.99383 * 21 19 17 25 25 C 1.38512 * 119.99450 * 270.25603 * 5 4 2 26 26 F 1.35103 * 120.12070 * 0.02562 * 25 5 4 27 27 H 1.08993 * 109.47042 * 299.99594 * 1 2 3 28 28 H 1.08997 * 109.47042 * 60.00168 * 1 2 3 29 29 H 1.08997 * 109.46584 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47158 * 240.00926 * 2 1 3 31 31 H 1.09004 * 109.47427 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47511 * 300.00084 * 3 2 1 33 33 H 1.09000 * 109.47257 * 60.00143 * 3 2 1 34 34 H 1.08002 * 119.87624 * 179.97438 * 8 6 5 35 35 H 1.08002 * 120.00982 * 180.02562 * 9 8 6 36 36 H 1.07997 * 119.70177 * 179.97438 * 13 12 11 37 37 H 1.08001 * 119.73716 * 179.69796 * 14 13 12 38 38 H 0.97000 * 119.99502 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2123 -2.0142 1.0649 6 6 3.4525 -2.4985 0.6654 7 9 4.4517 -1.6353 0.3793 8 6 3.6680 -3.8638 0.5593 9 6 2.6541 -4.7512 0.8498 10 6 1.4030 -4.2751 1.2524 11 6 0.3146 -5.2228 1.5638 12 7 -0.8786 -5.0824 0.9955 13 6 -1.8493 -5.9315 1.2768 14 6 -1.6377 -6.9795 2.1682 15 7 -0.4655 -7.1404 2.7443 16 6 0.5341 -6.2906 2.4736 17 6 1.7909 -6.4548 3.0855 18 1 2.5489 -5.6934 2.9752 19 6 2.0589 -7.6065 3.8379 20 7 1.1415 -8.5278 3.9716 21 14 3.7271 -7.8248 4.6495 22 1 3.6935 -7.2419 6.0148 23 1 4.0495 -9.2718 4.7369 24 1 4.7645 -7.1345 3.8419 25 6 1.1845 -2.8966 1.3543 26 9 -0.0234 -2.4282 1.7374 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8901 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 4.6339 -4.2334 0.2479 35 1 2.8262 -5.8141 0.7663 36 1 -2.8167 -5.8115 0.8119 37 1 -2.4432 -7.6632 2.3921 38 1 1.3268 -9.3247 4.4927 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236338659.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:47 Heat of formation + Delta-G solvation = -83.678755 kcal Electronic energy + Delta-G solvation = -26988.454032 eV Core-core repulsion = 22852.414635 eV Total energy + Delta-G solvation = -4136.039397 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.108 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.98686 -49.89078 -41.09568 -40.47017 -38.67544 -36.03296 -34.46320 -33.97804 -32.91242 -30.95065 -30.03607 -28.20906 -28.02358 -25.24135 -24.32336 -23.71561 -22.95204 -22.10949 -19.61513 -19.40979 -18.81671 -18.49906 -17.87288 -17.32065 -17.07969 -16.73248 -16.55296 -16.30860 -15.92026 -15.75720 -15.52908 -15.28923 -14.99287 -14.73472 -14.45582 -14.16168 -13.72086 -13.58152 -13.34565 -13.29896 -13.15859 -13.02967 -12.83797 -12.73908 -12.44889 -12.25861 -11.97848 -11.88326 -11.68219 -11.53341 -11.10321 -11.04804 -10.09864 -9.78433 -9.52536 -9.21830 -8.45916 -6.69487 -0.28708 -0.10449 0.61873 1.07296 1.41985 1.53218 1.57353 2.14093 2.17028 2.47077 2.72849 2.82754 3.39712 3.54279 3.66967 3.81338 3.87262 3.95694 4.06047 4.12511 4.14436 4.30098 4.41532 4.53739 4.66272 4.72316 4.77798 4.79438 4.86247 4.90031 4.97822 5.03327 5.10000 5.14918 5.17700 5.26288 5.37999 5.57689 5.74121 6.06842 6.32698 6.41641 6.65876 7.25475 7.83335 8.22918 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.014425 B = 0.004956 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.671031 B = 5648.319942 C = 7121.655079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.073 3.927 3 C -0.140 4.140 4 O -0.331 6.331 5 C 0.024 3.976 6 C 0.092 3.908 7 F -0.126 7.126 8 C -0.129 4.129 9 C -0.053 4.053 10 C -0.021 4.021 11 C -0.055 4.055 12 N -0.422 5.422 13 C -0.120 4.120 14 C 0.084 3.916 15 N -0.486 5.486 16 C 0.196 3.804 17 C -0.418 4.418 18 H 0.107 0.893 19 C 0.026 3.974 20 N -0.738 5.738 21 Si 0.982 3.018 22 H -0.267 1.267 23 H -0.264 1.264 24 H -0.239 1.239 25 C 0.095 3.905 26 F -0.133 7.133 27 H 0.061 0.939 28 H 0.095 0.905 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.185 0.815 35 H 0.154 0.846 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.033 9.099 -6.268 12.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.018 3.982 3 C -0.197 4.197 4 O -0.249 6.249 5 C -0.022 4.022 6 C 0.072 3.928 7 F -0.104 7.104 8 C -0.148 4.148 9 C -0.072 4.072 10 C -0.024 4.024 11 C -0.201 4.201 12 N -0.134 5.134 13 C -0.282 4.282 14 C -0.087 4.087 15 N -0.203 5.203 16 C 0.072 3.928 17 C -0.447 4.447 18 H 0.125 0.875 19 C -0.199 4.199 20 N -0.358 5.358 21 Si 0.801 3.199 22 H -0.192 1.192 23 H -0.188 1.188 24 H -0.162 1.162 25 C 0.074 3.926 26 F -0.111 7.111 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.119 0.881 33 H 0.084 0.916 34 H 0.202 0.798 35 H 0.172 0.828 36 H 0.178 0.822 37 H 0.180 0.820 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.991 9.044 -6.009 12.401 hybrid contribution -0.409 -0.269 0.447 0.663 sum 5.582 8.775 -5.562 11.794 Atomic orbital electron populations 1.22357 0.95114 1.02076 1.03650 1.22766 0.94424 0.94881 0.86127 1.21862 1.01999 0.91816 1.04014 1.86146 1.85675 1.14975 1.38089 1.18421 0.92022 0.84454 1.07308 1.17751 0.84387 0.88092 1.02610 1.91485 1.58357 1.69521 1.91034 1.21286 1.02039 0.89117 1.02309 1.21222 0.89818 1.01475 0.94681 1.18534 0.94768 0.89278 0.99798 1.20135 0.92858 1.01442 1.05662 1.67772 0.99944 1.24982 1.20716 1.23084 0.99381 0.98368 1.07366 1.24075 0.96189 0.95957 0.92451 1.69515 0.99525 1.26813 1.24397 1.19603 0.94161 0.88246 0.90810 1.20121 0.97115 1.03870 1.23604 0.87490 1.27125 1.02828 0.94446 0.95515 1.70111 1.34660 1.05720 1.25278 0.85178 0.76626 0.79068 0.79061 1.19172 1.18841 1.16190 1.18080 0.80735 0.91365 1.02403 1.91432 1.42488 1.88800 1.88411 0.91982 0.88669 0.94342 0.91754 0.91655 0.88104 0.91630 0.79814 0.82809 0.82243 0.82040 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.60 9.20 71.98 0.66 -3.94 16 2 C 0.07 1.93 3.40 30.59 0.10 2.04 16 3 C -0.14 -2.71 9.56 71.98 0.69 -2.02 16 4 O -0.33 -11.31 9.42 -93.74 -0.88 -12.19 16 5 C 0.02 0.86 5.56 22.52 0.13 0.98 16 6 C 0.09 2.87 7.31 22.55 0.16 3.04 16 7 F -0.13 -3.64 17.10 44.97 0.77 -2.87 16 8 C -0.13 -3.65 10.00 22.27 0.22 -3.43 16 9 C -0.05 -1.85 7.68 22.55 0.17 -1.68 16 10 C -0.02 -0.91 5.05 -20.01 -0.10 -1.01 16 11 C -0.06 -2.75 6.08 42.39 0.26 -2.49 16 12 N -0.42 -20.85 10.05 -182.35 -1.83 -22.69 16 13 C -0.12 -5.43 11.22 84.90 0.95 -4.48 16 14 C 0.08 3.90 11.22 84.96 0.95 4.85 16 15 N -0.49 -25.82 8.09 -187.83 -1.52 -27.34 16 16 C 0.20 10.29 6.53 40.36 0.26 10.55 16 17 C -0.42 -20.34 7.82 23.35 0.18 -20.16 16 18 H 0.11 4.80 5.72 -2.91 -0.02 4.78 16 19 C 0.03 1.18 5.49 85.33 0.47 1.65 16 20 N -0.74 -36.19 11.52 21.86 0.25 -35.94 16 21 Si 0.98 33.66 29.56 68.60 2.03 35.69 16 22 H -0.27 -9.21 7.11 99.48 0.71 -8.50 16 23 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 24 H -0.24 -7.54 7.11 99.48 0.71 -6.84 16 25 C 0.10 3.96 7.06 22.75 0.16 4.12 16 26 F -0.13 -6.01 14.54 44.97 0.65 -5.36 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 29 H 0.04 1.24 6.38 -2.39 -0.02 1.22 16 30 H 0.06 1.66 7.91 -2.39 -0.02 1.64 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.18 3.65 8.06 -2.91 -0.02 3.63 16 35 H 0.15 5.27 7.43 -2.91 -0.02 5.24 16 36 H 0.16 6.00 8.06 -2.91 -0.02 5.98 16 37 H 0.16 6.21 8.06 -2.91 -0.02 6.19 16 38 H 0.29 12.66 8.29 -92.71 -0.77 11.89 16 Total: -1.00 -63.85 335.39 5.86 -57.99 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 1.11 Total: 24.66 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: 5.28 Total: -11.97 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -3.10 Total: -85.97 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -0.88 Total: -12.19 kcal Atomic # 9 Polarization: -9.65 SS G_CDS: 1.42 Total: -8.23 kcal Atomic # 14 Polarization: 33.66 SS G_CDS: 2.03 Total: 35.69 kcal Total: -63.85 5.86 -57.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236338659.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.684 kcal (2) G-P(sol) polarization free energy of solvation -63.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds