Wall clock time and date at job start Tue Mar 31 2020 13:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47154 * 2 1 4 4 O 1.42904 * 109.47160 * 119.99720 * 2 1 3 5 5 C 1.35763 * 116.99412 * 85.19358 * 4 2 1 6 6 C 1.38498 * 120.11597 * 354.45681 * 5 4 2 7 7 C 1.38396 * 120.09373 * 180.28062 * 6 5 4 8 8 F 1.35097 * 119.83855 * 179.74665 * 7 6 5 9 9 C 1.39043 * 120.32024 * 359.76479 * 7 6 5 10 10 F 1.35099 * 119.88313 * 179.97438 * 9 7 6 11 11 C 1.37864 * 120.22658 * 0.02562 * 9 7 6 12 12 C 1.39824 * 119.90202 * 359.97438 * 11 9 7 13 13 C 1.47515 * 120.16350 * 180.02562 * 12 11 9 14 14 N 1.33078 * 120.55343 * 129.97109 * 13 12 11 15 15 C 1.31903 * 120.02563 * 180.02562 * 14 13 12 16 16 C 1.39022 * 121.22832 * 0.02640 * 15 14 13 17 17 N 1.31526 * 121.15337 * 359.97438 * 16 15 14 18 18 C 1.34091 * 119.86194 * 0.02562 * 17 16 15 19 19 C 1.40689 * 120.58179 * 179.97438 * 18 17 16 20 20 H 1.08002 * 120.00209 * 170.95321 * 19 18 17 21 21 C 1.40145 * 120.00058 * 350.94755 * 19 18 17 22 22 N 1.30701 * 119.99904 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99995 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47091 * 59.99854 * 23 21 19 25 25 H 1.48499 * 109.47078 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47121 * 299.99899 * 23 21 19 27 27 H 1.08998 * 109.47392 * 59.99966 * 1 2 3 28 28 H 1.08992 * 109.47197 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.47012 * 299.99962 * 1 2 3 30 30 H 1.09002 * 109.47183 * 240.00259 * 2 1 3 31 31 H 1.08995 * 109.47349 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46998 * 300.00275 * 3 2 1 33 33 H 1.09002 * 109.46864 * 60.00063 * 3 2 1 34 34 H 1.08001 * 119.95388 * 0.02562 * 6 5 4 35 35 H 1.08006 * 120.05405 * 180.02562 * 11 9 7 36 36 H 1.07994 * 119.38300 * 180.02562 * 15 14 13 37 37 H 1.08004 * 119.42592 * 179.69866 * 16 15 14 38 38 H 0.97002 * 119.99821 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1162 -2.0249 1.0966 6 6 1.6667 -2.7013 -0.0254 7 6 1.7737 -4.0794 -0.0940 8 9 1.3289 -4.7344 -1.1887 9 6 2.3362 -4.7931 0.9583 10 9 2.4357 -6.1383 0.8821 11 6 2.7918 -4.1329 2.0795 12 6 2.6884 -2.7407 2.1589 13 6 3.1746 -2.0284 3.3556 14 7 3.9863 -0.9806 3.2361 15 6 4.4151 -0.3516 4.3133 16 6 4.0358 -0.7617 5.5863 17 7 3.2355 -1.7910 5.7593 18 6 2.7728 -2.4633 4.6953 19 6 1.9165 -3.5669 4.8629 20 1 1.4333 -4.0106 4.0050 21 6 1.6906 -4.0905 6.1431 22 7 2.2750 -3.5532 7.1814 23 14 0.5541 -5.5563 6.3655 24 1 1.0786 -6.7110 5.5930 25 1 0.4836 -5.9140 7.8051 26 1 -0.8039 -5.2086 5.8753 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.2285 -2.1529 -0.8461 35 1 3.2287 -4.6900 2.8952 36 1 5.0732 0.4977 4.2042 37 1 4.4082 -0.2284 6.4485 38 1 2.1183 -3.9154 8.0675 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243409180.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:00 Heat of formation + Delta-G solvation = -67.829234 kcal Electronic energy + Delta-G solvation = -26985.347112 eV Core-core repulsion = 22849.995002 eV Total energy + Delta-G solvation = -4135.352110 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.108 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.06345 -48.12001 -40.02510 -38.63674 -36.96954 -34.24523 -33.05746 -32.34889 -31.34955 -29.55474 -28.38890 -27.23485 -26.19250 -23.62994 -23.25418 -21.91538 -21.07261 -20.80565 -18.32131 -17.76644 -17.11083 -16.93780 -16.15569 -16.07606 -15.82752 -15.12353 -14.90463 -14.70515 -14.56415 -14.34700 -14.18613 -14.12238 -13.30213 -13.21856 -13.07037 -12.68140 -12.57695 -12.45789 -12.19411 -11.82114 -11.67623 -11.61393 -11.48394 -11.39844 -11.13863 -10.78456 -10.60420 -10.49073 -10.25286 -9.93228 -9.63146 -9.26291 -8.64375 -8.02073 -7.59715 -7.34070 -6.67394 -4.83630 1.21014 1.48552 2.38434 2.88999 2.93915 2.96680 3.15130 3.40635 3.71957 3.84020 4.20441 4.49619 4.61507 4.81023 4.94362 4.96506 5.05781 5.12297 5.32522 5.52719 5.59436 5.65070 5.72071 5.80551 5.83955 5.96723 6.03607 6.09967 6.12580 6.17420 6.21763 6.31561 6.47191 6.63056 6.75429 6.86526 6.98600 7.12305 7.56107 7.74272 7.87377 8.22555 8.50176 9.16104 9.71994 9.92199 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.009901 B = 0.006245 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.345686 B = 4482.615902 C = 6262.650828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.071 3.929 3 C -0.145 4.145 4 O -0.274 6.274 5 C 0.160 3.840 6 C -0.228 4.228 7 C 0.083 3.917 8 F -0.136 7.136 9 C 0.028 3.972 10 F -0.137 7.137 11 C -0.077 4.077 12 C 0.023 3.977 13 C -0.034 4.034 14 N -0.390 5.390 15 C -0.123 4.123 16 C 0.095 3.905 17 N -0.460 5.460 18 C 0.227 3.773 19 C -0.395 4.395 20 H 0.096 0.904 21 C 0.065 3.935 22 N -0.699 5.699 23 Si 0.909 3.091 24 H -0.257 1.257 25 H -0.273 1.273 26 H -0.259 1.259 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.145 0.855 35 H 0.158 0.842 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.621 2.785 -9.386 10.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.015 3.985 3 C -0.202 4.202 4 O -0.186 6.186 5 C 0.112 3.888 6 C -0.248 4.248 7 C 0.062 3.938 8 F -0.115 7.115 9 C 0.008 3.992 10 F -0.115 7.115 11 C -0.097 4.097 12 C 0.021 3.979 13 C -0.182 4.182 14 N -0.102 5.102 15 C -0.284 4.284 16 C -0.076 4.076 17 N -0.176 5.176 18 C 0.102 3.898 19 C -0.425 4.425 20 H 0.114 0.886 21 C -0.163 4.163 22 N -0.318 5.318 23 Si 0.732 3.268 24 H -0.181 1.181 25 H -0.197 1.197 26 H -0.184 1.184 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.162 0.838 35 H 0.175 0.825 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.552 2.867 -8.956 9.744 hybrid contribution -0.635 -0.894 -0.200 1.115 sum -3.186 1.973 -9.156 9.894 Atomic orbital electron populations 1.22401 0.95352 1.03102 1.02967 1.22456 0.94127 0.94085 0.87830 1.21794 1.02413 0.93438 1.02543 1.86351 1.79955 1.15243 1.37052 1.18839 0.93892 0.83362 0.92707 1.20866 1.10485 0.92487 1.00958 1.17276 1.02378 0.89952 0.84185 1.91464 1.87328 1.81195 1.51517 1.17328 1.08016 0.77558 0.96310 1.91472 1.94775 1.28684 1.96605 1.21092 0.98761 0.93551 0.96312 1.17495 0.97918 0.90504 0.91997 1.20744 1.06685 0.99721 0.91044 1.67741 1.05935 1.03760 1.32738 1.22378 1.10805 1.05519 0.89724 1.23413 0.93730 0.94038 0.96372 1.69564 1.11505 1.06106 1.30397 1.20308 0.91160 0.92127 0.86216 1.19707 1.19846 1.08713 0.94236 0.88623 1.26212 0.96016 0.98545 0.95560 1.70027 1.29203 1.32837 0.99755 0.86311 0.80978 0.80916 0.78620 1.18150 1.19733 1.18372 0.91305 0.91830 0.91281 0.91192 0.91403 0.91034 0.91467 0.83785 0.82482 0.85676 0.85434 0.90638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 9.18 37.16 0.34 -1.75 16 2 C 0.07 0.95 2.84 -26.73 -0.08 0.87 16 3 C -0.14 -1.66 9.56 37.16 0.36 -1.30 16 4 O -0.27 -4.99 8.83 -19.00 -0.17 -5.16 16 5 C 0.16 2.99 6.60 -38.71 -0.26 2.73 16 6 C -0.23 -3.68 8.22 -39.43 -0.32 -4.00 16 7 C 0.08 1.41 7.31 -39.22 -0.29 1.12 16 8 F -0.14 -2.24 17.17 2.25 0.04 -2.20 16 9 C 0.03 0.51 7.29 -39.42 -0.29 0.22 16 10 F -0.14 -2.48 17.17 2.25 0.04 -2.44 16 11 C -0.08 -1.51 7.72 -39.13 -0.30 -1.81 16 12 C 0.02 0.49 5.19 -104.75 -0.54 -0.05 16 13 C -0.03 -0.81 6.18 -80.23 -0.50 -1.30 16 14 N -0.39 -9.27 9.90 -7.87 -0.08 -9.35 16 15 C -0.12 -2.75 11.17 -17.23 -0.19 -2.95 16 16 C 0.09 2.18 11.17 -17.39 -0.19 1.99 16 17 N -0.46 -11.96 8.14 -9.56 -0.08 -12.04 16 18 C 0.23 5.85 6.66 -82.64 -0.55 5.30 16 19 C -0.40 -9.68 7.87 -37.94 -0.30 -9.98 16 20 H 0.10 2.20 5.84 -52.49 -0.31 1.89 16 21 C 0.07 1.53 5.49 -17.32 -0.10 1.43 16 22 N -0.70 -17.13 11.55 55.56 0.64 -16.49 16 23 Si 0.91 17.32 29.56 -169.99 -5.03 12.29 16 24 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 25 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 26 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.77 6.93 -51.93 -0.36 0.41 16 29 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 30 H 0.07 0.83 6.30 -51.93 -0.33 0.51 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.14 1.91 5.43 -52.49 -0.28 1.62 16 35 H 0.16 3.08 7.37 -52.48 -0.39 2.70 16 36 H 0.13 2.41 8.06 -52.49 -0.42 1.98 16 37 H 0.13 2.51 8.06 -52.48 -0.42 2.08 16 38 H 0.28 6.23 8.29 -40.82 -0.34 5.89 16 LS Contribution 333.08 15.07 5.02 5.02 Total: -1.00 -28.21 333.08 -6.57 -34.78 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -3.76 Total: 5.08 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -3.21 Total: -9.48 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.49 Total: -37.89 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.17 Total: -5.16 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.08 Total: -4.64 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.29 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.21 -6.57 -34.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243409180.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.046 kcal (2) G-P(sol) polarization free energy of solvation -28.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds