Wall clock time and date at job start Tue Mar 31 2020 13:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47104 * 2 1 4 4 O 1.42902 * 109.47298 * 119.99525 * 2 1 3 5 5 C 1.35754 * 116.99665 * 84.91193 * 4 2 1 6 6 C 1.38980 * 119.86489 * 174.30817 * 5 4 2 7 7 C 1.37945 * 120.13364 * 179.72116 * 6 5 4 8 8 F 1.35099 * 120.06972 * 180.25510 * 7 6 5 9 9 C 1.40104 * 119.86457 * 0.55232 * 7 6 5 10 10 C 1.47466 * 120.13359 * 179.69961 * 9 7 6 11 11 N 1.33088 * 120.55801 * 304.43094 * 10 9 7 12 12 C 1.31896 * 120.02681 * 179.97438 * 11 10 9 13 13 C 1.39022 * 121.23475 * 0.02562 * 12 11 10 14 14 N 1.31527 * 121.15180 * 359.95612 * 13 12 11 15 15 C 1.34093 * 119.86536 * 359.76666 * 14 13 12 16 16 C 1.40678 * 120.58510 * 180.25416 * 15 14 13 17 17 H 1.07996 * 120.00024 * 172.50766 * 16 15 14 18 18 C 1.40140 * 119.99699 * 352.50818 * 16 15 14 19 19 N 1.30703 * 120.00204 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99815 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47198 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47546 * 119.99838 * 20 18 16 23 23 H 1.48504 * 109.47068 * 239.99999 * 20 18 16 24 24 C 1.40102 * 119.73610 * 359.72387 * 9 7 6 25 25 F 1.35097 * 120.07384 * 180.02562 * 24 9 7 26 26 C 1.37955 * 119.85814 * 0.02562 * 24 9 7 27 27 H 1.08993 * 109.47421 * 300.00108 * 1 2 3 28 28 H 1.09007 * 109.46947 * 60.00287 * 1 2 3 29 29 H 1.09003 * 109.46755 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47752 * 240.00184 * 2 1 3 31 31 H 1.09001 * 109.47195 * 179.97438 * 3 2 1 32 32 H 1.09007 * 109.46984 * 299.99690 * 3 2 1 33 33 H 1.08993 * 109.47069 * 59.99677 * 3 2 1 34 34 H 1.07995 * 119.93104 * 0.02562 * 6 5 4 35 35 H 1.08006 * 119.38162 * 180.02562 * 12 11 10 36 36 H 1.07997 * 119.42859 * 179.97438 * 13 12 11 37 37 H 0.97006 * 120.00114 * 180.02562 * 19 18 16 38 38 H 1.08002 * 119.92980 * 179.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.1106 -2.0253 1.0986 6 6 2.6778 -2.7298 2.1539 7 6 2.7813 -4.1040 2.0929 8 9 3.3282 -4.7880 3.1217 9 6 2.3238 -4.7885 0.9593 10 6 2.4376 -6.2569 0.8850 11 7 3.6172 -6.8529 1.0417 12 6 3.7069 -8.1671 0.9738 13 6 2.5858 -8.9550 0.7391 14 7 1.3970 -8.4158 0.5777 15 6 1.2531 -7.0843 0.6435 16 6 -0.0122 -6.4920 0.4784 17 1 -0.1399 -5.4338 0.6524 18 6 -1.1069 -7.2752 0.0882 19 7 -0.9522 -8.5557 -0.1228 20 14 -2.7869 -6.4886 -0.1317 21 1 -2.6963 -5.0364 0.1656 22 1 -3.2438 -6.6802 -1.5316 23 1 -3.7563 -7.1239 0.7968 24 6 1.7583 -4.0723 -0.1037 25 9 1.3145 -4.7254 -1.1999 26 6 1.6555 -2.6986 -0.0288 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 3.0337 -2.2007 3.0255 35 1 4.6693 -8.6399 1.1028 36 1 2.6927 -10.0284 0.6887 37 1 -1.7099 -9.0978 -0.3932 38 1 1.2201 -2.1453 -0.8477 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245530087.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:10 Heat of formation + Delta-G solvation = -66.679832 kcal Electronic energy + Delta-G solvation = -26932.411250 eV Core-core repulsion = 22797.108982 eV Total energy + Delta-G solvation = -4135.302269 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.108 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.35007 -48.26494 -40.08377 -38.72083 -36.94766 -34.21275 -33.37672 -32.24225 -30.99448 -30.03242 -28.44147 -27.42220 -26.11273 -23.77757 -22.80239 -22.05711 -21.39178 -20.59157 -18.52467 -17.77115 -17.00202 -16.27128 -16.17876 -16.10551 -15.50464 -15.34609 -15.05578 -14.78010 -14.59154 -14.47222 -14.23873 -14.04360 -13.67685 -13.03586 -12.87605 -12.83306 -12.70576 -12.39292 -12.34889 -11.75631 -11.60372 -11.51998 -11.49071 -11.40440 -11.21986 -10.86979 -10.80121 -10.48963 -10.27123 -9.95336 -9.63781 -9.21983 -8.41386 -8.22182 -7.61817 -7.35196 -6.65123 -4.81148 1.37315 1.41973 2.39446 2.87027 2.93481 2.98834 3.05419 3.15570 3.72574 3.80200 4.45941 4.52187 4.59431 4.71249 4.87076 4.89157 5.12458 5.17104 5.27122 5.27722 5.34585 5.53401 5.59042 5.67329 5.72735 5.86906 5.91966 6.01384 6.07636 6.18589 6.29066 6.45937 6.49438 6.51566 6.73790 6.87172 6.96054 7.10626 7.47397 7.59361 7.88671 8.24405 8.53386 9.15789 9.73806 9.94302 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.012285 B = 0.005419 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.703116 B = 5165.821684 C = 6796.046947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.074 3.926 3 C -0.147 4.147 4 O -0.304 6.304 5 C 0.169 3.831 6 C -0.206 4.206 7 C 0.174 3.826 8 F -0.120 7.120 9 C -0.070 4.070 10 C -0.043 4.043 11 N -0.399 5.399 12 C -0.125 4.125 13 C 0.096 3.904 14 N -0.458 5.458 15 C 0.229 3.771 16 C -0.381 4.381 17 H 0.090 0.910 18 C 0.065 3.935 19 N -0.697 5.697 20 Si 0.910 3.090 21 H -0.255 1.255 22 H -0.267 1.267 23 H -0.268 1.268 24 C 0.182 3.818 25 F -0.113 7.113 26 C -0.263 4.263 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.142 0.858 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.281 0.719 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.153 13.831 -1.098 13.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.018 3.982 3 C -0.204 4.204 4 O -0.218 6.218 5 C 0.123 3.877 6 C -0.225 4.225 7 C 0.153 3.847 8 F -0.098 7.098 9 C -0.074 4.074 10 C -0.192 4.192 11 N -0.111 5.111 12 C -0.286 4.286 13 C -0.075 4.075 14 N -0.174 5.174 15 C 0.104 3.896 16 C -0.410 4.410 17 H 0.108 0.892 18 C -0.164 4.164 19 N -0.316 5.316 20 Si 0.733 3.267 21 H -0.178 1.178 22 H -0.192 1.192 23 H -0.193 1.193 24 C 0.161 3.839 25 F -0.091 7.091 26 C -0.283 4.283 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.160 0.840 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.092 0.908 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.063 13.648 -1.026 13.686 hybrid contribution -0.741 -0.226 -0.324 0.839 sum -0.677 13.422 -1.350 13.507 Atomic orbital electron populations 1.22412 0.94924 1.03673 1.03039 1.22482 0.94530 0.93591 0.87587 1.21848 1.02132 0.93502 1.02959 1.86066 1.81087 1.15885 1.38769 1.18087 0.94331 0.82428 0.92821 1.20007 1.09634 0.91707 1.01200 1.17004 0.95039 0.88144 0.84502 1.91514 1.82521 1.79832 1.55963 1.18215 1.03311 0.92902 0.92939 1.20654 0.90940 0.90300 1.17290 1.67716 1.25620 1.11431 1.06349 1.22364 0.98857 0.90066 1.17337 1.23419 0.90565 0.99881 0.93587 1.69558 1.21008 1.10505 1.16372 1.20271 0.92038 0.88099 0.89204 1.19620 0.91185 0.96251 1.33976 0.89226 1.26213 1.01601 0.94708 0.93861 1.70056 1.32269 1.05634 1.23649 0.86187 0.80390 0.80946 0.79158 1.17807 1.19232 1.19260 1.17075 0.95076 0.88496 0.83295 1.91572 1.85946 1.81327 1.50219 1.21015 1.12563 0.93436 1.01291 0.91382 0.91034 0.91307 0.90541 0.91608 0.90567 0.91488 0.83973 0.85511 0.85275 0.90767 0.83987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 9.17 37.16 0.34 -1.40 16 2 C 0.07 0.76 2.84 -26.73 -0.08 0.69 16 3 C -0.15 -1.15 9.56 37.16 0.36 -0.79 16 4 O -0.30 -4.10 9.79 -18.97 -0.19 -4.28 16 5 C 0.17 2.65 6.61 -39.03 -0.26 2.39 16 6 C -0.21 -3.44 9.94 -39.41 -0.39 -3.83 16 7 C 0.17 3.51 7.27 -38.99 -0.28 3.23 16 8 F -0.12 -2.56 16.68 2.25 0.04 -2.52 16 9 C -0.07 -1.58 5.01 -104.74 -0.53 -2.10 16 10 C -0.04 -1.12 5.89 -80.24 -0.47 -1.59 16 11 N -0.40 -10.22 10.27 -7.87 -0.08 -10.30 16 12 C -0.13 -2.97 11.17 -17.23 -0.19 -3.16 16 13 C 0.10 2.33 11.17 -17.39 -0.19 2.14 16 14 N -0.46 -12.52 8.11 -9.55 -0.08 -12.60 16 15 C 0.23 6.24 6.46 -82.63 -0.53 5.71 16 16 C -0.38 -9.84 7.37 -37.95 -0.28 -10.12 16 17 H 0.09 2.21 5.99 -52.49 -0.31 1.89 16 18 C 0.06 1.57 5.50 -17.32 -0.10 1.48 16 19 N -0.70 -17.65 11.53 55.56 0.64 -17.01 16 20 Si 0.91 17.74 29.56 -169.99 -5.02 12.72 16 21 H -0.25 -4.86 7.11 56.52 0.40 -4.46 16 22 H -0.27 -5.09 7.11 56.52 0.40 -4.68 16 23 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 24 C 0.18 3.68 5.89 -38.99 -0.23 3.45 16 25 F -0.11 -2.47 15.14 2.25 0.03 -2.44 16 26 C -0.26 -4.30 8.19 -39.41 -0.32 -4.63 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.76 6.90 -51.93 -0.36 0.40 16 30 H 0.08 0.77 6.30 -51.93 -0.33 0.44 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.14 2.04 8.06 -52.49 -0.42 1.61 16 35 H 0.13 2.58 8.06 -52.48 -0.42 2.16 16 36 H 0.13 2.65 8.06 -52.49 -0.42 2.23 16 37 H 0.28 6.33 8.29 -40.82 -0.34 6.00 16 38 H 0.14 1.93 5.39 -52.49 -0.28 1.65 16 LS Contribution 332.21 15.07 5.01 5.01 Total: -1.00 -30.31 332.21 -6.61 -36.92 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -3.80 Total: 3.05 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -3.16 Total: -8.55 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.48 Total: -39.90 kcal Atomic # 8 Polarization: -4.10 SS G_CDS: -0.19 Total: -4.28 kcal Atomic # 9 Polarization: -5.03 SS G_CDS: 0.07 Total: -4.96 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.02 Total: 12.72 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.31 -6.61 -36.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245530087.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.765 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds